Acni024193.1
Basic Information
- Insect
- Aethes cnicana
- Gene Symbol
- -
- Assembly
- GCA_963971205.1
- Location
- OZ020299.1:2178579-2195304[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.092 6.2 8.1 0.5 1 23 278 300 278 300 0.98 2 12 0.045 3 9.1 4.9 1 23 307 329 307 329 0.96 3 12 0.082 5.6 8.2 6.3 1 23 333 355 333 355 0.97 4 12 0.01 0.69 11.1 1.7 1 23 360 383 360 383 0.92 5 12 0.0012 0.085 14.0 0.0 2 23 389 411 388 411 0.94 6 12 0.054 3.7 8.8 0.1 3 22 424 443 423 443 0.92 7 12 0.063 4.3 8.6 0.0 3 23 456 477 455 477 0.95 8 12 0.0013 0.09 13.9 0.9 2 23 483 505 482 505 0.95 9 12 0.0012 0.082 14.0 2.8 2 23 529 550 528 550 0.97 10 12 0.00022 0.015 16.3 1.3 1 23 556 578 556 578 0.97 11 12 4.9e-06 0.00034 21.5 0.3 1 23 584 606 584 606 0.97 12 12 0.00055 0.037 15.1 1.4 1 23 612 635 612 635 0.96
Sequence Information
- Coding Sequence
- ATGGATAAAGTGGAACTTGGCACAGAAGACCTAAGAGCGTGTAGGGCATGTCTCGCTACGAATACGCAGCTGCACAGTATTCCAGATGGCTTAGAAGACAAATTTGTACAATTAATGGTTGTTGAATTCTCTGAAGCTGACGGGTTACCTCAGCACCTCTGTTCTTTCTGCCGGGCGCTGCTTCTCAAGTTCTCTGGCTTCAAAATGCGCTGCGCCAGAGCACAGTGGCTTCTTAAACAGACAATCATCCAACACCCATATGTTTCAACAGACAACATCCGAGCTATAGACAGAAGTTTCAACAAACTGGCCCTGAATCTGGCACCATTTATCCTTGATAACGTTACCATAGATACAAATACAGAAACTGTTAAACTAGAAGATCATTTCGACGATGATTTTGGTGATAGAGAAGAATTCGACACTAAAAGAGAAATTGAAGCAAATAATGAAATTACAGAACCCGAAGAACACCCAAATGATAAGGAAGTTGATACAACTGATGTGAAAACGCAAGTGCTTATAGAAATcgatgatataaataaaataatcaaagaaAAAAGGTCAAAAGCCAATGATAGATGCAAAAGGCAGGCCAAACGAGAAATTAAGAAAGTGAAGAAAGgcaaaataaagaaagaaacacAGAAGACCGCTGGGGTTGTGGGGGGTCGTGTTAAGAAGCCGttgatgataaaaaataaaatacatcaagATAATGTTAAAGAGTTTGAAACGAAGAATGATTGTACATTCAAGTTGTTGAGTTTGGAGGAACAGTTTAGAGAAATAGAGGAGAGGAAAATGAGTAGTAATTATTTGAATTTGGATTATAAATGTGAGCGCTGCGCGAGAGGCTTCGAATTAGAACAGCCTTATAAGAATCACATGATCAAGCATGATCCGAGCAGCGGCAAGTTTGTTTGTGAAGTGTGCGGTATACACTACGCGACTCAGCATCAGAGGCGCCATCACACGGAGTACCACAGGATCAAGTTTACTTGTAACATCTGTTCGTTCGTCACCAGGACCAAACACCACGCATTTCGGCATTACCAAGAACACAACGGATTTCGATACGTCTGCAAATACTGCGGCGCCAAGTTCAAGAAGCCATCGACGCACGGGACCCACGTCAGAGTCCAGCACCCCACGGAGCACGTGCCGTGTGACGTCTGCGGGGAGACCTTCGTCGGGGCGTCGGGGCTGCGGATGCACAAGGCCAAGGTCCACAGACAGAATGCAGAAGCCGAGTCAGAAAGCAACAGCTGTGCGTCCTGCGGCGTGCAGTTCGCCAGTTCTTACGCCATGAAGAGACATACACTCACCTCCGCCAGGAACAAATGCAGCCCTGCTATGAGgGCTTGCACGGTGTGCGGGGAGAACCTAGCGAGCGCGGAGCTCCTCGAAGAACATTCGAGGTTGCGCCACGCCGAGCCGCGGACGAGCTGCGACCAGTGCAACAAGACGTTCCAGTCGGAGGCGTCGCTGAGCGTGCACCGCGAGCGCTTCCATCTGCAGCTGCGAGGGCCGCGACTCAAGGGAGCGCAGCGGAGGAGGAAGTCGGCCGCATTAGGCACCCTGGTCTGCGAGCTCTGCGGGAAAAAGTGCACCaacAAAACCATCCTGACGTACCACCAGAGAACGCACACGGGCGAGAAACCGCACAGCTGCCCACGTTGCCCGAAAACATTCCTTTCCCCCAACCTGCTGCAAAGCCATCTACGCTCGCATACTGGGGAAAAGCCATATAAATGCCCGCAGTGTGAGAAGGCGTTCGCTTACAAATCGGCGCTCAATGTGCACAAAACTGTACATTCGGGGGAGAAACCCTACTCCTGTTCCCTTTGCGAGAAGACCTTCACTCAAGCTGCCTCCGTCCACACGCACGTCAAGTACGTCCACATGAAGCTCCCCGCGCCGCCCCGCCGCAGGACCCTCGCGAAACCACacaatattcaatag
- Protein Sequence
- MDKVELGTEDLRACRACLATNTQLHSIPDGLEDKFVQLMVVEFSEADGLPQHLCSFCRALLLKFSGFKMRCARAQWLLKQTIIQHPYVSTDNIRAIDRSFNKLALNLAPFILDNVTIDTNTETVKLEDHFDDDFGDREEFDTKREIEANNEITEPEEHPNDKEVDTTDVKTQVLIEIDDINKIIKEKRSKANDRCKRQAKREIKKVKKGKIKKETQKTAGVVGGRVKKPLMIKNKIHQDNVKEFETKNDCTFKLLSLEEQFREIEERKMSSNYLNLDYKCERCARGFELEQPYKNHMIKHDPSSGKFVCEVCGIHYATQHQRRHHTEYHRIKFTCNICSFVTRTKHHAFRHYQEHNGFRYVCKYCGAKFKKPSTHGTHVRVQHPTEHVPCDVCGETFVGASGLRMHKAKVHRQNAEAESESNSCASCGVQFASSYAMKRHTLTSARNKCSPAMRACTVCGENLASAELLEEHSRLRHAEPRTSCDQCNKTFQSEASLSVHRERFHLQLRGPRLKGAQRRRKSAALGTLVCELCGKKCTNKTILTYHQRTHTGEKPHSCPRCPKTFLSPNLLQSHLRSHTGEKPYKCPQCEKAFAYKSALNVHKTVHSGEKPYSCSLCEKTFTQAASVHTHVKYVHMKLPAPPRRRTLAKPHNIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -