Basic Information

Insect: Aethes cnicana
Gene Symbol: -
Assembly: GCA_963971205.1
Location: OZ020301.1:5386663-5394202[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0054 0.37 12.0 3.6 1 23 444 466 444 466 0.97

2 9 2.2e-05 0.0015 19.5 5.5 1 23 513 535 513 536 0.95

3 9 0.011 0.73 11.0 0.0 2 23 542 563 542 563 0.97

4 9 1.5e-06 0.0001 23.2 2.7 1 23 569 591 569 591 0.99

5 9 0.014 0.93 10.7 2.9 3 21 598 616 597 618 0.96

6 9 7.6e-07 5.1e-05 24.1 1.4 1 23 627 649 627 649 0.99

7 9 3.7e-05 0.0025 18.8 0.8 1 23 655 678 655 678 0.94

8 9 0.036 2.5 9.4 2.5 1 23 684 707 684 707 0.94

9 9 0.00012 0.0084 17.1 0.5 1 23 715 738 715 738 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0054	0.37	12.0	3.6	1	23	444	466	444	466	0.97
2	9	2.2e-05	0.0015	19.5	5.5	1	23	513	535	513	536	0.95
3	9	0.011	0.73	11.0	0.0	2	23	542	563	542	563	0.97
4	9	1.5e-06	0.0001	23.2	2.7	1	23	569	591	569	591	0.99
5	9	0.014	0.93	10.7	2.9	3	21	598	616	597	618	0.96
6	9	7.6e-07	5.1e-05	24.1	1.4	1	23	627	649	627	649	0.99
7	9	3.7e-05	0.0025	18.8	0.8	1	23	655	678	655	678	0.94
8	9	0.036	2.5	9.4	2.5	1	23	684	707	684	707	0.94
9	9	0.00012	0.0084	17.1	0.5	1	23	715	738	715	738	0.96

Sequence Information

Coding Sequence: ATGTTACATAACAGTGGGCCTTATGGGCCGAACGACGTTCCTATAAACATGGGAGCGCCCGTGAATATGACCCAAATGTCGAGTCCAATGAATATTGGAAACAGTTTGGGTAATTTGGCTAAAATGCCGCCACAAACCTCTCAGACATCAGTATCGCCGTATAATATGCCAGATTATCCATCATTTGGCCATTCTTCGTTGAATATGGGGCATTCCATGACCCCATTTGGAAGCTATCACCCTTTGAACTTTCAAGCTAATTACGGTCATGGAAATCCTAATTTCCACCATGATGCAAGCTTAAACACCGTCCAAAACGGTATGTTACCAATGAATTTGAATATGCAAAGCGAGCCGAGCCCTAACCTGATGAATTACCACAGTTTTGATCCTAAAAGAATGGATATAAATACTCCCAACTACAGAGAAAGCTATGGTCGAAAAATGCCTATTAACATTCCTCAGATACACACAAAAGCTTTCCATAAGCACATAGGAATGGATTCCAATTATGGCCAATACAATCCTATACAAGAAAACCCTTTTTATAATCAAGATGCAGTAAAACCTACACAGAAATGTCTTATAGACAGCGACAGGCGAAAAAGCCTTGAAAATACAGTTAAGCTCATCGAAAATATACTTATTAACAGCACATCTAAAGACAAAGTAAAAGATACCGAGCCGGTTAAAATGAATGTACCAAATGTTGAAATTTCTACAAATATGTCAAGTGAAACCGAAGCTTTGGTACCTGACATGCATGAAAATGTAGATTCAAATAAGACAAAAACAAGTTTCAAggtaaatgaaaatattgataaaccaCACACAAGCACAGAAATAACAAGCACAGACATTTACGACTCTAAACCAAATATAGAATGTGATAATCAACCTCCTAAAAAAGACAAACCTTTAGTTGATATGAATTCATTAAAAATAGACATGACAATTTCAAATTCGGACATAAGGACCCCGGATTCAAATGCAACTAAAGTACAGAGCACAATTCACTGCAAGCCTCTGAAACGTAGCTTGCTAAATAACAACAAAACTCATACGGAAAGCATGGATAATGATACTACCGACAATGAAGATAAAGACAGTGATTCGGAGAACgaagcaaaatatataaaacaggAGATCGAAGAAGTGGTTACGATTAAAGTAGAACCTTGgaataatgatgataatgtgCATATATTTTTAAGGGATAGCAATGCGACGGCGAGAGACGATATTGGTGTTGACGCAGTGATTGTTGAAGGAGACAATGTTGTCACAGAAGCTATGGAAGCTGCTAAAGATGGTTCCTCGGACAAATTCTTCGAATGCCCCCACTGCAGTCTCATGTTCAGCCATCCGAAGCGGTTCCTGATCCACACCAAGTGGCACTCCTTCGGGTTGACCAACGAAAAGAGACTAGAGCTCGCGAAGGAGAAGGAAAtgaggaaaaatatgaagaaagaAGCGAGAATTATGGAGAGGTTGAACTTAAAAGAACAAAAGGAACAAAGTTCAGAGGACACGGTTCATCCTTGCAAAGATTGTGATAAAGTCTTCAAAGTTAAAAACAGTCTCAAAAACCACCGGCAGAGGCATCACCCGACGCGACTGCGCGAGTGCAAGATCTGCAACGCCACGGTGGTGGGCTGGATGGCGTTGAGGGAGCATTTGAACACGCACTCCGGGGGAGGCGGGTATCAGTGTCCGGAGTGTCCGAAGCGCTTCAAGTATTCGCACTCGCTGGCCAAGCATAGGGATACGCATTTGGAAAAGACCCACGGCTGCGAGCAATGCGAAAAGAAGTTCGGGTCCCAGACTCTCCTGAAGATGCACATGAAATGTCATGAAAGAACGGCGCGGGGCACCACCTTCCGGTGCACTTACTGCGGGAAAGGCTTTTACGAGAGCTACAATCTGCAGGTGCACGAGCGAACGCACAGGAATGAGCGGCCATTTTTGTGTGACATCTGCAATTCGAGCTTTGGAACCAACTCGAGTTTGAAGAGGCATCTCAAAGTGTCCCACAGCACATCCAAACCGTTCTCATGTGAAACGTGCAAGCGTTGCTTCGCCACCGCGAACACACGAGACCGCCACACCGCGCGCGCCCATGGGGACATTTCCATCTTTGGGTACGCCTGTACCCTCTGCCCACGCCGCTACAGAGTCGCCAAGGAGCTTCAGAAACACATGTACAAGATACACCCGAAGAAGAGACAGGAGGTCGAACAAGAATAA
Protein Sequence: MLHNSGPYGPNDVPINMGAPVNMTQMSSPMNIGNSLGNLAKMPPQTSQTSVSPYNMPDYPSFGHSSLNMGHSMTPFGSYHPLNFQANYGHGNPNFHHDASLNTVQNGMLPMNLNMQSEPSPNLMNYHSFDPKRMDINTPNYRESYGRKMPINIPQIHTKAFHKHIGMDSNYGQYNPIQENPFYNQDAVKPTQKCLIDSDRRKSLENTVKLIENILINSTSKDKVKDTEPVKMNVPNVEISTNMSSETEALVPDMHENVDSNKTKTSFKVNENIDKPHTSTEITSTDIYDSKPNIECDNQPPKKDKPLVDMNSLKIDMTISNSDIRTPDSNATKVQSTIHCKPLKRSLLNNNKTHTESMDNDTTDNEDKDSDSENEAKYIKQEIEEVVTIKVEPWNNDDNVHIFLRDSNATARDDIGVDAVIVEGDNVVTEAMEAAKDGSSDKFFECPHCSLMFSHPKRFLIHTKWHSFGLTNEKRLELAKEKEMRKNMKKEARIMERLNLKEQKEQSSEDTVHPCKDCDKVFKVKNSLKNHRQRHHPTRLRECKICNATVVGWMALREHLNTHSGGGGYQCPECPKRFKYSHSLAKHRDTHLEKTHGCEQCEKKFGSQTLLKMHMKCHERTARGTTFRCTYCGKGFYESYNLQVHERTHRNERPFLCDICNSSFGTNSSLKRHLKVSHSTSKPFSCETCKRCFATANTRDRHTARAHGDISIFGYACTLCPRRYRVAKELQKHMYKIHPKKRQEVEQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -