Acni024163.1
Basic Information
- Insect
- Aethes cnicana
- Gene Symbol
- Znf296
- Assembly
- GCA_963971205.1
- Location
- OZ020299.1:1928245-1954103[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.13 8.9 7.6 0.5 2 23 483 504 482 504 0.97 2 11 0.0036 0.25 12.5 5.3 2 23 512 533 512 533 0.97 3 11 3.6 2.4e+02 3.1 0.4 1 19 537 555 537 559 0.84 4 11 5.1e-06 0.00035 21.5 2.4 1 23 564 587 564 587 0.98 5 11 0.0015 0.099 13.8 0.1 2 23 596 618 596 618 0.95 6 11 0.23 16 6.8 0.0 2 20 627 645 626 646 0.93 7 11 0.013 0.87 10.8 0.0 3 23 659 680 658 680 0.93 8 11 6.5e-06 0.00045 21.1 0.3 1 23 685 708 685 708 0.95 9 11 2.5e-05 0.0017 19.3 0.2 3 23 737 757 736 757 0.98 10 11 0.00039 0.026 15.6 0.1 1 20 763 782 763 783 0.96 11 11 5.6e-06 0.00038 21.3 0.6 1 23 787 810 787 810 0.96
Sequence Information
- Coding Sequence
- ATGTCGCTGGAGAGCGAGATTGCGTCATGGGAGTGCAGCGTGCGCGCGAAGGAGGAGCACGAGGCGAGCTCGGCGTTGGCGCGCATGGAGCAAGACGAGGAAGGCGGACAGACGGAGTGCGGCGTGAAGGAGGAGGAGGGCGGACAGATGGAGTGCGGCGTGAGCGTGAAGGAGGAGGAGGGCGGACAGATGGAGTGCGGCGTGAGCGTGAAGGAGGAGGAGGGCGGACAGACCGAGTGCGGCGTGAGCGTGGCGGCCGCGCGGGCAGGCTTGTACGTGGGCCACGCGGTCAAGGGCGAGCTCGTGCTGGGCCCCACGGCGCTGCAACCGCCCGACGCCGCCTTCGCGCTAGCAGAGTCATTTATCCATTGGCAGATGTATGAATCCGAGAATGCAGAAGACTCTGGCACGCCGCCTGGCGAGGAGCGCAGCCGGAGCCCAGCAGGAGGCCCTGGCCCCGGAGCGAGCTGCGGGGATCAGCCCCGACTCAGGGCTTGTTCTGTCAGACTCAAGCTCCTCCCGCCCCACGAGAAGAAGCGTGCGAACAGCTCAACACTCAGCACGAGCATTAAGAGGCGCAAACGTATTCATTCAGGCCAGAAACCATACaaTGACAAAATGACTGACACTGTGAAACAGGAGACAATAGACGAGTTGTTGGCTTGCCGAATATGTTTGCGGACAGACACCAAACTATTTGGTATATTTGATCTCCAATTGGAGGAAACTTTCGTAGAACTTATGGGAATTCAGTTGTCAGTATGGGACGGGCTGCCGCAGCACCTGTGCCCGTGGTGCGTGGCGCTGCTTCGGAGCGCCGCGGGGCTGCGGCGCCGCGCCCGGCGCGCGCAGCGGCTGCTCCTGGACGCCCTGACGCATCAGCACTTTGTGACGACTGATATAATATGCACCATAGACCGAGTAGCCAACCAACTGACTTTAAACCTCACCATAGACAAATTAGACAAACAACCCATAGAGTTTACACATAACGAGGATGAGAAACTTGACATATTTGTAACAGAGAACGAAAACCATGATAATATTCATAGTGAAgacgatgattatgatgataataTCTTTCTAAAAGACATAGCCAATCCTATGGtagaaattattgaaaataaacTTGTCACACCCAGAAGGCTGCTTAGAGAATCGAAAGTGTTTGAAAATGTAAATggtaaagttaaaaatgttaaGTTAAAGGGTTCAAAATCTGTTAAGTCGAGAAATGTGAAGCGAAAAGTACAAAAAAAGGTTAAAAGGGAATTGAAGGTGGAAGTGAAGTACAAGAAAGGTTTCAAAAGGTTCTTCAGCTGCGAAGAAGACTATATAAAGTTTGAGAAcaaatataatattactattgTTAAGGTGAGCGAGGAGGAGCAGCGCAAAGAGATGCGCGCGCGCAAACTGTCTGCGAACTACTTGCGCGCGCACGTGCGCTGCGAGCGCTGCTACAAGGGCTTCCTCTCCGAAGCCACCTTCCAAAACCACCTCAAGGTCCACGACGCGAGTATGGGGTCCAACGAGTGCCACCTCTGCTTCGTCCGCTTCAAGCACCCGACGCGGCTGCGTCGGCACATGGAGACACACACGCTAAAATTCATCTGCAAGTTGTGTCCGCTCGTCACTAGGCACCGCGGAATGGCCATGATGCATTCTGACTTCCACTCTGGGAAAACCTTCGAGTGTAACTACTGCGGGCTCACTTTCAAAAAGAAGACAACTTTCAACACGCATATTCGCGTTCAGCACCCGCTGGAGAACGCGTCGCGGGGCACCTGTGACGTGTGCGGCGAGACCTTCATAGGGCAACGGGGGCTGCAGCAGCACAAGACGATGGCGCACCGGCGGTTGCCAATTCCCGAGTTGAAATGTTCGGAGTGTAACGTGCAGTTCGAGAACTTGGACGCTGTTGTACGACATGTGGACGCACGCGACGGCGCCTGCGACCCGCGactcagGGCGTGTCCGCAGTGCGGGGAGACGTTTCCCGACGATCAAGGATTGGCTTCGCACGTCGACAGCTCACACGTCACGCCAGTATACAAGTGTGACGAATGTGACAAGTCGTTCGCGAGCCGCTCCTCCCTGGGGACCCACGTGGACCGCGTCCACCTCATGATCAAGCCCAAGAAAGTGGGGCATTACAAGCACCACCTCTACGACAAGAAGAATGCGAACAAGAGAGTGGAGGAGATCTGCGAAGTCTGCGGGAAAGGGTACCCGAGCTCCACGTGGCTGAAGTACCACCAGCGCACACATACCGGCGAGCGCCCCTACAAGTGCCCCGAATGCCCCAAAAGCTACATGACGCCCGCCGCTCTACACGTACATACAGGAGAGAAACCGTTCGAGTGTCAGATTTGCCAGAAAACGTTCACGCAATCCGGTTCTTTGGCCACCCACGTCAAATACGTTCACCTAAAGGTCAAACCGCCGCCCCGACGGCGAAGGAAAGAGCAAACCACTTAA
- Protein Sequence
- MSLESEIASWECSVRAKEEHEASSALARMEQDEEGGQTECGVKEEEGGQMECGVSVKEEEGGQMECGVSVKEEEGGQTECGVSVAAARAGLYVGHAVKGELVLGPTALQPPDAAFALAESFIHWQMYESENAEDSGTPPGEERSRSPAGGPGPGASCGDQPRLRACSVRLKLLPPHEKKRANSSTLSTSIKRRKRIHSGQKPYNDKMTDTVKQETIDELLACRICLRTDTKLFGIFDLQLEETFVELMGIQLSVWDGLPQHLCPWCVALLRSAAGLRRRARRAQRLLLDALTHQHFVTTDIICTIDRVANQLTLNLTIDKLDKQPIEFTHNEDEKLDIFVTENENHDNIHSEDDDYDDNIFLKDIANPMVEIIENKLVTPRRLLRESKVFENVNGKVKNVKLKGSKSVKSRNVKRKVQKKVKRELKVEVKYKKGFKRFFSCEEDYIKFENKYNITIVKVSEEEQRKEMRARKLSANYLRAHVRCERCYKGFLSEATFQNHLKVHDASMGSNECHLCFVRFKHPTRLRRHMETHTLKFICKLCPLVTRHRGMAMMHSDFHSGKTFECNYCGLTFKKKTTFNTHIRVQHPLENASRGTCDVCGETFIGQRGLQQHKTMAHRRLPIPELKCSECNVQFENLDAVVRHVDARDGACDPRLRACPQCGETFPDDQGLASHVDSSHVTPVYKCDECDKSFASRSSLGTHVDRVHLMIKPKKVGHYKHHLYDKKNANKRVEEICEVCGKGYPSSTWLKYHQRTHTGERPYKCPECPKSYMTPAALHVHTGEKPFECQICQKTFTQSGSLATHVKYVHLKVKPPPRRRRKEQTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -