Basic Information

Insect: Aethes cnicana
Gene Symbol: -
Assembly: GCA_963971205.1
Location: OZ020272.1:2254249-2268266[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0004 0.027 15.5 6.3 1 23 170 192 170 192 0.99

2 11 1.4e-05 0.00093 20.1 0.7 1 23 198 220 198 220 0.99

3 11 1.1e-05 0.00074 20.5 1.7 1 23 226 249 226 249 0.96

4 11 0.036 2.4 9.4 3.3 1 21 255 275 255 277 0.95

5 11 4e-05 0.0027 18.7 0.8 1 23 283 305 283 305 0.99

6 11 9.1e-05 0.0062 17.5 3.3 1 23 311 333 311 333 0.98

7 11 0.00076 0.052 14.6 1.1 1 23 341 364 341 364 0.98

8 11 0.023 1.6 10.0 5.3 2 23 371 392 370 392 0.97

9 11 0.0011 0.073 14.2 2.0 1 23 398 420 398 420 0.98

10 11 4.5e-06 0.00031 21.6 4.1 1 23 426 449 426 449 0.96

11 11 1.2e-05 0.00079 20.4 3.8 1 23 463 485 463 485 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0004	0.027	15.5	6.3	1	23	170	192	170	192	0.99
2	11	1.4e-05	0.00093	20.1	0.7	1	23	198	220	198	220	0.99
3	11	1.1e-05	0.00074	20.5	1.7	1	23	226	249	226	249	0.96
4	11	0.036	2.4	9.4	3.3	1	21	255	275	255	277	0.95
5	11	4e-05	0.0027	18.7	0.8	1	23	283	305	283	305	0.99
6	11	9.1e-05	0.0062	17.5	3.3	1	23	311	333	311	333	0.98
7	11	0.00076	0.052	14.6	1.1	1	23	341	364	341	364	0.98
8	11	0.023	1.6	10.0	5.3	2	23	371	392	370	392	0.97
9	11	0.0011	0.073	14.2	2.0	1	23	398	420	398	420	0.98
10	11	4.5e-06	0.00031	21.6	4.1	1	23	426	449	426	449	0.96
11	11	1.2e-05	0.00079	20.4	3.8	1	23	463	485	463	485	0.95

Sequence Information

Coding Sequence: ATGCCACCTCCTGACAAGAAGGCAGTGACCCTGACGGATGGAAAGCTAATCCAGTCATACCTGAACGCTTACGAGGAACCTGAGGAAGGAGAAGCCACTACTGttttagTGAATAATGAAGAAGAGGAGAACCCCAATGGTGTCACCTACTTTGTGGATGAGCAGGGCCGGTATTACTACCAACCTGGAGAGAATCAGACCATCATGTCTCTTGCGCACACTGAGGAAAATGATGAGGGGATTGCAGAGGAGGACAATGCTATTATGGAAGAGGAATATCAAACCGTCACACTGGTGCCATCCGACACGGGCACCGGCGAAGTGAGCTATGTGCTCGTTGTCCAGGAGGAGTCAAAACCGGTCCTCAATGTCGACATCAAAATCGACCAGGAGGACAAAGGCAACGACGACGTGTACAACTTCGAGGAGGAGGGAGCGGAGGAGGCTTCGGAGGAGGAGGAGGCGGCAGTCAAGCCCAAGAAGAAAAAGAGGACCCAGAGCTGCAAGTTCACATGCACATTCTGCAATTACACGACGCATCGACGCTACTTGCTGCTACGCCACATGCGGACGCATTCTGTGGACCGGCCGTACAAATGCAAGGTCTGCGAGCGCGGCTTCAAGACGATGGCGTCCCTCCAGAACCACGTGAACATGCACAACGGCATCAAACCCCATGTCTGCAAATACTGCAACACACCCTTCACTACGTCAGGCGAGCTGGTCCGCCACGTCCGCTACAGGCACACGCACGAGAAGCCCCACAAGTGCACCGAATGCGACTACGCGTCCGTGGAACTGTCCAAACTGCGGCGCCACGTGCGCTGCCATACCGGCGAGAGGCCCTACCAGTGCCCGGACTGCACGTACGCGTCGCCGGACACGTTCAAGCTGAAACGGCACCTGCGCACGCACACAGGCGAGAAGCCGTACAAGTGCGATAGCTGCAACATGTGCTTCACGCAGTCCAACTCGCTCAAGGCGCACAAGCTCATCCACAACGTGGCCGACAAGCCGGTGTATCGGTGCGAGCTGTGCCCGGCGAAGTGCGGCCGCAAGACCGACCTCCGCATCCACATACAGAAGCTGCACACCGCCGACAAGCCGCAGAAGTGCAAGCGGTGCGGGAAATCCTTCCCCGACCGCTACTCCTGCAAACTCCACAATAAGACGCACGAGGGCGAGAAGTGCTTCAAGTGCGACCTCTGCCCGTACGCGTCGACGATGCTGCGCCACCTCAAGTCCCACATGCTGCGGCACACCGACGAGAAGCCGTTCGTCTGTAACGACTGCGACCAGTGCTTCCGTCAAAAGCAGTTGCTACGTCGGCATCAGAACCTGTACCACAACCCTGACTACGTTCCAAAACCGCCGAAGGAGAAGTCGCACGCCTGCCACGAGTGCAAACGCACCTTCGCCCACAAGGGCAACCTGATCCGCCACTTGGCCGTTCACGACCCTGATTCTGGTCACACGGAGCGCGCGATGGCTCTCAAGATAGGCCGCCAGCGCAAGATCAAATACGTGCAGTCCCGCCAGCGGCAGGAGGAGTCAGCGGAGACCGAGGACAGTATGGTGAAGCTCGGGCTGACCAGCAACGAGCTGCACCGCGGCGAGCTGGTCACGGTGGCCGACGGCGACGGCCAGCAGTACGTGGTGCTGGAGGTCATCCAGCTGGAGGACGGTACGGAGCAGCATGTGGCGGTCGTGGCGCCCGAGTACATCGAGTGCGAGGACGAGCACGCCAACTCGGGCCATGAgttggaggaggaggaggaagacgacgaggaggaggaggaggaggagacGGTGGAGGTGCGCATCAAGGACCCCATCCTCGAGAAGAGCATCAAACTCGAGAAGGACGTCAACACCTGCTTCGGCTTCGACAAGGAGGATGCCGAAGAAGAGGATTACGGAATTCTAGAAGACCACGCTTAA
Protein Sequence: MPPPDKKAVTLTDGKLIQSYLNAYEEPEEGEATTVLVNNEEEENPNGVTYFVDEQGRYYYQPGENQTIMSLAHTEENDEGIAEEDNAIMEEEYQTVTLVPSDTGTGEVSYVLVVQEESKPVLNVDIKIDQEDKGNDDVYNFEEEGAEEASEEEEAAVKPKKKKRTQSCKFTCTFCNYTTHRRYLLLRHMRTHSVDRPYKCKVCERGFKTMASLQNHVNMHNGIKPHVCKYCNTPFTTSGELVRHVRYRHTHEKPHKCTECDYASVELSKLRRHVRCHTGERPYQCPDCTYASPDTFKLKRHLRTHTGEKPYKCDSCNMCFTQSNSLKAHKLIHNVADKPVYRCELCPAKCGRKTDLRIHIQKLHTADKPQKCKRCGKSFPDRYSCKLHNKTHEGEKCFKCDLCPYASTMLRHLKSHMLRHTDEKPFVCNDCDQCFRQKQLLRRHQNLYHNPDYVPKPPKEKSHACHECKRTFAHKGNLIRHLAVHDPDSGHTERAMALKIGRQRKIKYVQSRQRQEESAETEDSMVKLGLTSNELHRGELVTVADGDGQQYVVLEVIQLEDGTEQHVAVVAPEYIECEDEHANSGHELEEEEEDDEEEEEEETVEVRIKDPILEKSIKLEKDVNTCFGFDKEDAEEEDYGILEDHA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00654560;
90% Identity: -
80% Identity: -