Acni002520.1
Basic Information
- Insect
- Aethes cnicana
- Gene Symbol
- Znf296
- Assembly
- GCA_963971205.1
- Location
- OZ020272.1:9272541-9283891[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.28 19 6.6 2.7 2 21 150 169 147 170 0.90 2 13 6.2e-05 0.0042 18.1 1.1 2 20 183 201 182 205 0.91 3 13 0.35 24 6.3 1.3 2 23 245 266 244 266 0.96 4 13 0.85 58 5.1 0.0 2 19 345 362 345 367 0.88 5 13 0.049 3.3 9.0 0.1 2 21 373 392 372 393 0.92 6 13 0.00015 0.01 16.9 0.6 1 23 401 424 401 424 0.97 7 13 6.8e-05 0.0046 17.9 4.9 1 23 445 467 445 467 0.98 8 13 1.6e-05 0.0011 19.9 4.6 1 23 474 496 474 496 0.98 9 13 1.4e-07 9.8e-06 26.4 2.3 3 23 509 529 507 529 0.96 10 13 3.3e-05 0.0023 18.9 3.2 1 23 535 557 535 557 0.99 11 13 2.3e-06 0.00016 22.6 1.7 2 23 564 585 563 585 0.96 12 13 1.7e-07 1.1e-05 26.2 1.5 1 23 591 613 591 613 0.99 13 13 0.0094 0.64 11.2 0.6 1 23 619 641 619 641 0.97
Sequence Information
- Coding Sequence
- ATGGCTTCGGCTTCAAATGTTTTGAAGCAAATTAAGTTGGAAAACTTATGTAGGACTTGTTTAACTAAGGACACTGTCTTGCATTCTGTATTTGGTGTGTACACTGGAACAATAAGTTTCCGATATGTTATAAGTGAAATTACGGGTTTACAGATAGAAGAAAATGATGGCCTGCCGTTGAGCATATGTGAAGGTTGCAAGGATAAGGCTATTAGTGCTTTTGATTTCAAGTTAAAATCCCATGAAGCATATGCTGCACTTCAGACATTATgtaagaataaagaaatagagATATCAACACATGCTGTCAAAGTTGAAAACAGCAATGTTGATGAGGACGATGAATGCATGGATACTGATTATTCTTTATCAGCCATGCCAGAGAATTATAGAGAATTGGatataattaaaaatgaaaGTGAAGGTGAAAGCAATCCACAATGTCCACAATGCAAAGAGTGTTGCCTTGTGTTTGATTCTGCAACTAAACTGAAGGAACATATGCAAAAATGTGTTAAAGTTGAGTGTGAAGAAGAACAGGGCACATATTGTCCTTTGTGTGGGACATGCTATGAGAATGCTGATAATCTAACAAAACATATGTGGACAAAACATGCTGAACTCATGGGGCCAAAGAAGCGAGGCAGACCAAAGAAGTTATTAACTAGTactatattaagtaaattatcaGAAAATGGATTCATTATAAGAGCTGAACCTGTAAAAAcaaaatcgtgttttttttgtaaggatgaatttaaaagtaaattagaCTTAGGAATTCATATGATGAAACATAAAGAATCCAAGGTGCTTTGCTGCTTGCTgtgtaaaaaaatgtatctcAACAATACGTTTTTCGAAAAACATATTTGTGTTGAAAACAAAAATTATTCAACCAAGTCAATAATTGAAGAAAAAATCTTAAATGTCCAATCAAACaagaacaaaaatattaattatctaACAGAAGTGTTACTACAAGAGCTGCTTGATCCAAATTGTGATATGGAAAACATTAATGCTCTTGAAGTATGCAGTATTTGCGGTGGCGTATTTTTGTCGCAAGAAGAGCTCGTTACTCACAACGATGCTGAACACCCAGAATTATCGCAAAGATGTAACCTTTGTTCTAAGGTATTCGCATCTGTGAAGTCAGCGGCACGTCACAGAAACATATGTAAGGAAATAGAAAGAAAATACTCTTGCAGTACTTGTGGCCTTAAATTTGCTTATGAAATATCATTGAATAAACATATACTACGGTTCCATGAAGGACAAAGCGTGTCAGTGAAGTTCATGGATCCGAAAACGAAACTAGAAGAGCGTCAATATCAGTGTGACACTTGCAGTAGATGTTTTTATAGAAAAGATTTGCTGGCTAGACATACTAAACAGCATACACCAAATGAAAAACTATTTGAATGTGACGTGTGTAAAAAGAAATTCCACAGGAGAGATAATCTTCGATCTCATAAACGGGTACATGAGTACCGGGATAAAAGTGCGAGTAGCAACTGCCTGTGCCTCTATTGCGGTCGTAGCTTCTCGAACTCTTCGAACTTGATCGTTCATATGCGACGACATACGGGCGAGAAACCTTACAAATGTGATTTCTGTGGCAAAGGTTTTCCGAGATCATCAGATTTGCAGTGTCATAGAAGGTCGCACACCGGGGAAAAGCCATGCATATGCGTTGTTTGTGGAAAAGGTTTCTCTCGCAGCAACAAGTTGTCCCGGCACATGCGCGTGCACACGGGTCACAAGCCGTACAAGTGCACTTACTGCGAGAAGGCCTTTTCGCAAAGCAACGACTTGACGCTGCACATTCGCCGGCACACCGGGGACAAGCCCTACATTTGCGAAGTGTGCGGAGATAGATTTATTCAGGGGACATCGCTTCACAATCATCGTCGAGCTCACGGCCACTTCCCAGCCTCGGCCACGGATGCACACTCAAATTCTCAGGGTTTATCTTACACCTCTCTTGCCCCTCCTAGCTAA
- Protein Sequence
- MASASNVLKQIKLENLCRTCLTKDTVLHSVFGVYTGTISFRYVISEITGLQIEENDGLPLSICEGCKDKAISAFDFKLKSHEAYAALQTLCKNKEIEISTHAVKVENSNVDEDDECMDTDYSLSAMPENYRELDIIKNESEGESNPQCPQCKECCLVFDSATKLKEHMQKCVKVECEEEQGTYCPLCGTCYENADNLTKHMWTKHAELMGPKKRGRPKKLLTSTILSKLSENGFIIRAEPVKTKSCFFCKDEFKSKLDLGIHMMKHKESKVLCCLLCKKMYLNNTFFEKHICVENKNYSTKSIIEEKILNVQSNKNKNINYLTEVLLQELLDPNCDMENINALEVCSICGGVFLSQEELVTHNDAEHPELSQRCNLCSKVFASVKSAARHRNICKEIERKYSCSTCGLKFAYEISLNKHILRFHEGQSVSVKFMDPKTKLEERQYQCDTCSRCFYRKDLLARHTKQHTPNEKLFECDVCKKKFHRRDNLRSHKRVHEYRDKSASSNCLCLYCGRSFSNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCICVVCGKGFSRSNKLSRHMRVHTGHKPYKCTYCEKAFSQSNDLTLHIRRHTGDKPYICEVCGDRFIQGTSLHNHRRAHGHFPASATDAHSNSQGLSYTSLAPPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -