Acni025059.1
Basic Information
- Insect
- Aethes cnicana
- Gene Symbol
- -
- Assembly
- GCA_963971205.1
- Location
- OZ020300.1:6201604-6208720[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.1 6.8 8.0 1.5 1 23 114 137 114 137 0.95 2 12 0.00023 0.016 16.3 2.9 1 23 242 264 242 264 0.96 3 12 0.00013 0.0088 17.1 1.3 1 23 274 296 274 296 0.99 4 12 0.00042 0.029 15.5 3.9 1 23 304 327 304 327 0.97 5 12 0.011 0.75 11.0 0.5 3 23 335 355 333 355 0.96 6 12 7.5e-06 0.00051 21.0 4.0 1 23 361 383 361 383 0.98 7 12 3.2e-07 2.2e-05 25.3 1.1 1 23 389 411 389 411 0.96 8 12 4.3e-05 0.0029 18.6 0.3 1 23 417 439 417 439 0.98 9 12 4.1e-07 2.8e-05 24.9 1.1 1 23 445 467 445 467 0.98 10 12 0.00017 0.011 16.7 1.4 1 23 473 495 473 495 0.98 11 12 0.00036 0.025 15.7 3.7 1 21 501 521 501 523 0.95 12 12 1e-05 0.0007 20.5 0.1 1 23 529 551 529 551 0.98
Sequence Information
- Coding Sequence
- ATGGACACTACTAAACTAAACGTTGATTTAATATGTAGAACTTGTATGTGCGAAGCGACCAACATGAAATCTGTGTTCGTCAAACTACAAAATGAGAAAACTATAAAAGACGTACTTgcatttattacaaatattaGCATTAATAGTGGTGATAGCCTTCCAAAACAAGTTTGCAATGAATGTGAGGCTTTTCTATGCCAAGCTGATGCTTTCAAGCGGCGCTGTTTGGACGTAGAATCGAAGTTATCACTACTTTTCACGAACGACGACCCCAAGCTCTTATCTCCGATAAAACCTGAAAAATGTATAGAAGAAAGTAATTTAAACGCGGATGAGCCTTATCAGTGTTCAATctgttcaaataagtatacagaAGTAGCTTTATTAGAAAATCATGTATATAAATGCCATCAATTAAATGACGTGCCATTATTGAAtgaaataactttattttctaATAGCAAAGCGCATATAATTACGCTGGAAACTATACCAGAGAAGAAAGAAGACGTAGAAGCAGTAAAAGAAGAGTTTACAGATGATTTTGAACACTTTGATAACACTTTCAATGATTTTTCGGAACCTGATGAATCTTCGTTGATTCGTCTCATTCCACCGGACTTGAGTATTGTGAAACTGTCTAAAGACACATTCGATATCGCCACCGATGCATTCAATGAAACACACAAATCCCTATCAGAAAATAAGAAAAAGAGAAAACGGCACATATGCGATAAGTGCGGTTTAGAATTTACCAACGCAACATCCTTGAACATTCACAGGAAGCATCACGACAAAATGAAAGAAGTCGAAAAGAAATATCAATGTTCGTTGTGCATGCGGAAATTCGTGAAGAAAGCCTCTTTGACCAACCATTTACGGGTACACGAGAACCGAGATGAAGTTAAATACACGTGCGGCAGTTGTAAACGTGAATTTAAACATAAAGCTCACTTGGATAACCACATGGTCACGTTGCACGCAAATGAGAAAGGGTTCGGGtgtgatttttgttttaaaaacttTGCAACGCAAGAGAGTCTGGACATTCACAGGGAACTACATAAGATAGACAAGAAACACACATGTCAGTATTGCAATAAGTCGTTTTATATGTTGTCGACTTTGACTGATCACATAAGGACCCATACTGGAGAGAAGCCTTATCTGTGCTCCACGTGTGGCCGCGGGTTCAGTCAGAAAACTAATCTGGCTCAACACATGCGCCGCCATCTTGGTTTGAAGCCGTACGCCTGTCAGCAGTGTGAAcagagGTTCGTCTCCAAGGGTGAGCTGGTGGCGCATACCCGCAAGCACAGCGGGGCGCACCCCTTCGTCTGCGAGGAGTGCTCCCGCGGCTTCACCACGTCCTCGTCCCTGGTCAAGCACCGCCGGACCCACAGCGGGGAGCGGCCCTACGCCTGCGACCTTTGTCACATGAGATTCGCAGCCTCCGGTACCCTAAAAAATCACCGGAGAACCCACACCGGCGAGAAACCTTACCACTGTTCGTACTGCGAAAAGGCTTTCGTCCAAAAAAATGACCTGGTCTCCCATATACGatgTCACACAGGCGAGCGTCCGTTCGTCTGCTCCGTATGCGGCAGTTCGTTCCGTAAGGCCTCGGCTTTACGCGCTCACGCCAAAATGCACGCCGCCCTCCTCACGACGGACAAAATCATGCCATTCTGA
- Protein Sequence
- MDTTKLNVDLICRTCMCEATNMKSVFVKLQNEKTIKDVLAFITNISINSGDSLPKQVCNECEAFLCQADAFKRRCLDVESKLSLLFTNDDPKLLSPIKPEKCIEESNLNADEPYQCSICSNKYTEVALLENHVYKCHQLNDVPLLNEITLFSNSKAHIITLETIPEKKEDVEAVKEEFTDDFEHFDNTFNDFSEPDESSLIRLIPPDLSIVKLSKDTFDIATDAFNETHKSLSENKKKRKRHICDKCGLEFTNATSLNIHRKHHDKMKEVEKKYQCSLCMRKFVKKASLTNHLRVHENRDEVKYTCGSCKREFKHKAHLDNHMVTLHANEKGFGCDFCFKNFATQESLDIHRELHKIDKKHTCQYCNKSFYMLSTLTDHIRTHTGEKPYLCSTCGRGFSQKTNLAQHMRRHLGLKPYACQQCEQRFVSKGELVAHTRKHSGAHPFVCEECSRGFTTSSSLVKHRRTHSGERPYACDLCHMRFAASGTLKNHRRTHTGEKPYHCSYCEKAFVQKNDLVSHIRCHTGERPFVCSVCGSSFRKASALRAHAKMHAALLTTDKIMPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -