Acni023351.1
Basic Information
- Insect
- Aethes cnicana
- Gene Symbol
- -
- Assembly
- GCA_963971205.1
- Location
- OZ020298.1:2896873-2906757[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.56 38 5.6 0.1 2 23 2 24 1 24 0.94 2 32 0.086 5.8 8.2 0.2 2 23 49 70 48 70 0.93 3 32 0.19 13 7.1 0.4 1 20 92 111 92 113 0.94 4 32 0.013 0.89 10.8 1.0 2 23 145 167 144 167 0.96 5 32 0.046 3.1 9.0 0.6 1 23 236 258 236 258 0.97 6 32 0.033 2.2 9.5 0.1 3 23 264 285 263 285 0.94 7 32 0.015 0.99 10.6 0.4 1 22 290 311 290 311 0.95 8 32 7.1 4.9e+02 2.1 0.2 1 10 318 327 318 341 0.73 9 32 0.026 1.7 9.8 1.6 1 19 348 366 348 371 0.83 10 32 0.062 4.2 8.6 3.9 1 23 375 397 375 397 0.96 11 32 1.6e-05 0.0011 19.9 1.6 2 23 404 425 403 425 0.96 12 32 0.65 44 5.4 0.3 2 23 476 498 475 498 0.94 13 32 0.038 2.6 9.3 0.5 1 23 569 591 569 591 0.91 14 32 0.19 13 7.1 0.8 2 23 628 650 627 650 0.91 15 32 0.44 30 6.0 0.2 2 23 675 697 674 697 0.92 16 32 4.1 2.8e+02 2.9 2.0 3 23 721 741 720 741 0.96 17 32 2e-05 0.0014 19.6 3.4 1 23 745 768 745 768 0.96 18 32 0.47 32 5.8 0.4 3 21 775 793 774 794 0.94 19 32 0.19 13 7.1 0.9 3 23 803 824 801 824 0.93 20 32 0.0096 0.65 11.2 2.3 1 23 831 854 831 854 0.95 21 32 0.073 5 8.4 1.6 1 23 859 881 859 881 0.95 22 32 8.3e-05 0.0057 17.7 0.3 1 20 887 906 887 909 0.94 23 32 0.0067 0.46 11.7 1.0 1 23 915 938 915 938 0.95 24 32 0.19 13 7.1 0.9 2 23 1058 1080 1057 1080 0.95 25 32 6.1 4.2e+02 2.4 2.2 1 23 1102 1124 1102 1124 0.94 26 32 0.0011 0.076 14.1 2.1 1 21 1128 1148 1128 1149 0.94 27 32 4.3 2.9e+02 2.8 0.1 2 22 1157 1177 1157 1177 0.91 28 32 0.002 0.14 13.3 2.0 1 23 1184 1207 1184 1207 0.97 29 32 0.0073 0.5 11.6 1.8 1 23 1214 1237 1214 1237 0.96 30 32 0.00046 0.032 15.3 0.4 2 23 1243 1264 1242 1264 0.96 31 32 1.7e-05 0.0012 19.8 0.4 1 20 1270 1289 1270 1292 0.94 32 32 6.1e-05 0.0041 18.1 3.6 1 23 1298 1320 1298 1321 0.96
Sequence Information
- Coding Sequence
- ATGCGCTGTTATTTTTGTTCCGATGTCTATGAAGACCCAGCGGAGTTTAGGCAGCATATGGATTCAGACCACcctaaagttgacaaatctACACTCTTATCAAACGAATCAGTAAACCTAGTCAGAGTAGATATCACAGGATTGCACTGCACTGTTTGTTCTAATGATTTTAGCAGTCTAGATGACCTAGCAGTACATTTAGTTGAACATGATTTGAACATTGATGTCTCTGAAAAAATGGGTCTGGTACCTTTCAAGCTCGATGGCACTCGTTTTGTTTGCGTCGTCTGCAAGAAAGCTTGTCCTGGTTTCTACCAACTATCGCGCCATACCGACGTCGTTCGACGGAGACGGGACGCCGCCAAGCAGAACTCGCAATTGATACTGAAAAACTCGACGGCGTATCCGTTCCTGCAAATGTCATCCTCATTGCGATGCTGTTTTTGTCGAGAAATTTTCGACGATCCCACTCTGTTCAGAGCACACATGGACACCGTTCATGCGGGTCTCGACCGGTCCACTTGCAACAAATGCAACTTGGATACTCAGACGCGTGTAGATATTACAAACTTGCGGTGCTTACAATGCATAAAGAAATTCAACACTATAGAAGCTATTGCGAAACATTTACACGACGAACACGAACTTCGCATAGAACTTGGCCAAAGTTTAGGTCTCGTGCCGTTGAGATTGGAGAAAGATCGCTTCGAGTGCGTCGTGTGCTCTCAAAAATTCACTAGCACCATTCAAGTTTCCCGCCACACTGGGACACACTATTTTAGAAATATCTGTGACATTTGTGGAAAAGGATTTGAGAGTAGAAGGGGGATTGATAGTCACGTTAAAGTGCGACACTCAACACGCACGTTTTACTGCAGGAAATGCAAGCAATCCTTTCCTACGTTAGCAGCTAAACAGGAACATATGCGGGTCAATAGGTCCTGCCTACCCTTCAGATGTGGCATTTGTACGGAGCGCTTCTTATTTTGGGAACGAAGGGAGGACCATATGGTCGAGGTCCATGGTATGCAAAAGAAACTTTTCAATTGTACTGAATGCGATAAAGTATTTGAACGGCGTACACTgttgtattttcattttaaagcgAATCACACGGAGGATCACAAATGTGCGTACTGTGAGTTGACTTTCCCTACCAAACGAGACGTGCGGGAGCACACGCACCAGCATACTGGTGAGCGACCTCTAAAATGTCACATCTGCGAAAAATCCTTCGCCCGAGACAAAAACTTGAAGCAACATCTCATCATTCATGACGATAGCAAGAAGAAAGTGTGCTCATTCGTGGGAAATGACCTTGGGATTTCTTTTGTTCTAGAGGATCAAGGCGCCACAAGACGGAACGGCAAAGAAATCATCAAATACACTACAGCGTATCCGTTCAGGATTCCGGAACAAAGCATGGTTTGCGTCTATTGTTGCAAAAGCATCGATGACCCTGTAGATTATAGGAAGCATATGGAAATCGAGCACAAGTCTTTCACAGTGAACCTCGCTTACTTTCATTGCAGTGGAGGCTTTCTAAAAGTAGACATTACCGAATTAAAATGTCGCATTTGCGGGGAAGCCCTCGAGAATCTCCACATAGCGGCATTACATCTGCAGAACGTTCATGAAAACGACAACATAGATTTCGAGTACGAAATAAATTTACAGCCTTTTAAACTAGTCGATAATAGCAATTTTGAGTGTGCAATTTGCAACGCAAAAGCTTTCTCTTTGCGACAGCTAAGTAGACACACACAGACACATTTTTCTAAGCTACCCTACAACGATGCTTATTTCAACGCGAAACGGAACGCCGAGATTATCGTGAAATATTCGACTGCCTACCCGTTCAGGCTCCCTGAGAACTCCATGGTTTGTGTGTACTGCTGTGAGAGTTTCGATGACCCCACACTTTATAGAAAACACATGACCGACGAGCACCAAACGTTTAAAGTCCGCATGGCGTTCGTGCACTGTAGCGAAGGTTTCATCAAAGCAGACTGCACAGATCTCCGCTGTCGCATCTGCACACAACCCTTCGACACCTTAGAAGCGATCGCTAATCACTTGCATCTGGAACACGATATGAAATTAAACCTAAACTTTGAATTGGGCATGCAACCATTCAAACTAGAAAAAGAAATACTTCTGTGCGCCATCTGCAGCATGAAGTTTCCATGCATACGTCAGCTAAGCAGGCATACGCAAACTCATTACCTAAAGTACACATGCGATACCTGTGGGAAGTCATATGCGACGAATACCACCCTAAGAAACCACATTAGGTTCTGTCACGCGGGCAATGAACGGATATGCAGAAAGTGTAGGATGACCTTCTCAACTTTAGAAGCGAAAAGAGAACATTTAAGACTGTCTTCAAAGTGCTGGTCACATCTTTGTGTGCTTTGCGGCGAACGTTTTATGACGTGGACCTTGAAACAAAGCCACCTCAACCAGGTCCATAAAGCACCAAAGCGATTGCATCATTGCCCTGAATGCGGAGAAATCTTTGCCGAAAGGAAGAAATATCGCGCCCACTTCAAAATATCGCACACGAACGATAACTTCACTTGTTCTTGTTGTGGTTTGAAATTTGATACAAAGCGGGGTCTCGAAGAGCACAGAGTAGTCCACACTAAAGAGAAGCTGTTCCCATGTTTGGTTTGCTCTAAATCATTTCCTAGAAAGAAGAATTTGGCCCAGCACATGTGGATACATAGCGAATACAAGAGATTCGAGTGTGCGCCTTGTAATAAACAATTCAACCAAAGAGTCAGCTGGCGGACACATATGAAGTCATACCATCAAGACATGACCGATTTTGACGGGAAGCAAACACACAGTGGCAACCTCAAAATTAAACAGTCTGGTCCTCTGGATCAAGCACTCGGTTCCATCATTCAGAACATTTCTTTTGTTTTAGACGAAAAATCGGTGTCCAATGCCATCGAGAGACAAAACGCCGAGTTAATAGTCCGCTACTCGACCGCGTACCCATTCAGGCTCCCCGGCGAACTCATGGTGTGCGTCTACTGCTGCGACGAATTCGAAGACCCACAGCTATTCAGACAGCACATGGATGACGACCACCAGCAGTTCAAAGTTGCCGTGGCGTTTGTCCATCTCGCCGAAGGCGACCTTAAAGTCGACTGCACTGACCTCCGATGTAGAAAGTGTTCCGAATGTTTCCCAAAGTTAGAAGATGTCGCCGAACATCTGTTCACAGTCCACGACTACCCTATAAATCTTAATCACTATTTGGGATTGCAACCGTTCACGATATTCAAGGATGCATTCCTCTGCGCAGTGTGCTCAACGAAATTTCCCTGCCTGCGAACCTTAAGCAAACACACCCAGATTCATTTTGTTAGATTCTTTTGCGATAAATGTGGAAAATCTTACTCCACTACGACGTCTTTCAACGCGCATCGTAAATTCTGCGATAAAGGAAATGGGCCGGTCTGTAGAAAGTGTCTCCAGTCATTTCCGAGTCTGGAAGCCAGAAAGGAGCATTTGTTGACGTCCAAATCATGTTGTCGACATACGTGTAACTTTTGCGGCGAAAGATTTTTTACGTGGAATCTTAAGCAGCAACATATGATGATTGTGCACGGAAAACCAAAAAAAGAGCACAAATGTCCGGAGTGCAAAGCCACCTTTAATTCGCGTCAAGCTTTTGCGATGCATTTTAAAATAAACCACACCGAGAATTATGTGCAATGCACATATTgcgacatgaaatttggtactgaATATAAACTTAAAAGTCATATCCTAGGTCACACGGGAGAAAAGGCTTTCGAGTGTCCCGAATGCTTGAAGACATTTCCTAGGAGTAATAATTTGAAGCAACACATGTGGATTCACAAAGAAGTTAAGAGATTCGAATGTAAATTGTGCAATAAGCAGTTTAATCAAAAGATCAGTTGGAAAATTCATATGCGGTCCCACCATCCGGAGCTTTGCGACCTCCCTGAGAAGCCTCGCAGAAGTCACAGAGTGTGA
- Protein Sequence
- MRCYFCSDVYEDPAEFRQHMDSDHPKVDKSTLLSNESVNLVRVDITGLHCTVCSNDFSSLDDLAVHLVEHDLNIDVSEKMGLVPFKLDGTRFVCVVCKKACPGFYQLSRHTDVVRRRRDAAKQNSQLILKNSTAYPFLQMSSSLRCCFCREIFDDPTLFRAHMDTVHAGLDRSTCNKCNLDTQTRVDITNLRCLQCIKKFNTIEAIAKHLHDEHELRIELGQSLGLVPLRLEKDRFECVVCSQKFTSTIQVSRHTGTHYFRNICDICGKGFESRRGIDSHVKVRHSTRTFYCRKCKQSFPTLAAKQEHMRVNRSCLPFRCGICTERFLFWERREDHMVEVHGMQKKLFNCTECDKVFERRTLLYFHFKANHTEDHKCAYCELTFPTKRDVREHTHQHTGERPLKCHICEKSFARDKNLKQHLIIHDDSKKKVCSFVGNDLGISFVLEDQGATRRNGKEIIKYTTAYPFRIPEQSMVCVYCCKSIDDPVDYRKHMEIEHKSFTVNLAYFHCSGGFLKVDITELKCRICGEALENLHIAALHLQNVHENDNIDFEYEINLQPFKLVDNSNFECAICNAKAFSLRQLSRHTQTHFSKLPYNDAYFNAKRNAEIIVKYSTAYPFRLPENSMVCVYCCESFDDPTLYRKHMTDEHQTFKVRMAFVHCSEGFIKADCTDLRCRICTQPFDTLEAIANHLHLEHDMKLNLNFELGMQPFKLEKEILLCAICSMKFPCIRQLSRHTQTHYLKYTCDTCGKSYATNTTLRNHIRFCHAGNERICRKCRMTFSTLEAKREHLRLSSKCWSHLCVLCGERFMTWTLKQSHLNQVHKAPKRLHHCPECGEIFAERKKYRAHFKISHTNDNFTCSCCGLKFDTKRGLEEHRVVHTKEKLFPCLVCSKSFPRKKNLAQHMWIHSEYKRFECAPCNKQFNQRVSWRTHMKSYHQDMTDFDGKQTHSGNLKIKQSGPLDQALGSIIQNISFVLDEKSVSNAIERQNAELIVRYSTAYPFRLPGELMVCVYCCDEFEDPQLFRQHMDDDHQQFKVAVAFVHLAEGDLKVDCTDLRCRKCSECFPKLEDVAEHLFTVHDYPINLNHYLGLQPFTIFKDAFLCAVCSTKFPCLRTLSKHTQIHFVRFFCDKCGKSYSTTTSFNAHRKFCDKGNGPVCRKCLQSFPSLEARKEHLLTSKSCCRHTCNFCGERFFTWNLKQQHMMIVHGKPKKEHKCPECKATFNSRQAFAMHFKINHTENYVQCTYCDMKFGTEYKLKSHILGHTGEKAFECPECLKTFPRSNNLKQHMWIHKEVKRFECKLCNKQFNQKISWKIHMRSHHPELCDLPEKPRRSHRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -