Acni023807.1
Basic Information
- Insect
- Aethes cnicana
- Gene Symbol
- -
- Assembly
- GCA_963971205.1
- Location
- OZ020298.1:6170236-6182917[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 2.6 1.8e+02 3.5 2.7 1 23 57 80 57 80 0.96 2 30 0.19 13 7.1 0.2 2 23 84 105 83 105 0.94 3 30 0.0031 0.21 12.7 1.8 2 23 125 147 124 147 0.93 4 30 2.3 1.6e+02 3.7 0.1 2 13 151 162 150 172 0.81 5 30 1.2 80 4.6 2.0 2 23 178 200 178 200 0.96 6 30 1.9e-05 0.0013 19.7 0.5 2 23 207 228 206 228 0.97 7 30 0.00043 0.029 15.4 6.0 1 23 234 256 234 256 0.97 8 30 8.5e-05 0.0058 17.6 0.6 2 23 263 284 262 285 0.94 9 30 0.82 56 5.1 3.4 1 23 313 336 313 336 0.97 10 30 0.19 13 7.1 0.2 2 23 340 361 339 361 0.94 11 30 0.47 32 5.9 0.9 2 23 381 403 380 403 0.93 12 30 1.6 1.1e+02 4.2 0.3 2 15 407 419 406 428 0.76 13 30 2.4 1.6e+02 3.7 0.1 2 23 434 456 434 456 0.93 14 30 1.9e-05 0.0013 19.7 0.6 2 23 463 484 462 484 0.97 15 30 0.0004 0.028 15.5 5.8 1 23 490 512 490 512 0.97 16 30 8.5e-05 0.0058 17.6 0.6 2 23 519 540 518 541 0.94 17 30 0.77 52 5.2 4.0 1 23 569 592 569 592 0.97 18 30 0.19 13 7.1 0.2 2 23 596 617 595 617 0.94 19 30 0.025 1.7 9.9 1.3 2 23 637 659 636 659 0.93 20 30 0.9 62 5.0 0.1 2 15 663 675 662 684 0.76 21 30 0.54 37 5.7 0.6 2 23 690 712 690 712 0.96 22 30 1.9e-05 0.0013 19.7 0.6 2 23 719 740 718 740 0.97 23 30 0.0004 0.028 15.5 5.8 1 23 746 768 746 768 0.97 24 30 8.5e-05 0.0058 17.6 0.6 2 23 775 796 774 797 0.94 25 30 0.19 13 7.1 0.2 2 23 852 873 851 873 0.94 26 30 0.041 2.8 9.2 1.2 2 23 893 915 892 915 0.93 27 30 1.8 1.2e+02 4.0 0.1 2 13 919 930 918 940 0.80 28 30 9.7e-06 0.00066 20.6 1.1 2 23 975 996 974 996 0.97 29 30 0.00043 0.029 15.4 6.0 1 23 1002 1024 1002 1024 0.97 30 30 8.5e-05 0.0058 17.6 0.6 2 23 1031 1052 1030 1053 0.94
Sequence Information
- Coding Sequence
- ATGAGCTTTGGAAGATCCTATGGCTCCCCGCGCACCCCGCACCCTACGCCCGCGCACCGCCGCGCCCGGGCGCGCCCCCGTGACCAGGAGAACCTCGACTTGCCGTTCAAGCTGGAGCTGAGCGAGTATCCGTTCATCAAGATCAGCGAACACTCCGGCGGCACGAGATATCATTGCGAGACATGCAAATCCACTCTTCGCACTATCTATATATTAAAGCGGCACATTCTCATGAAACACATCACAAGCCAATGCCCCATGTGCGACAAAATTGTAACTGCATCCGAGAAACGACAACATCTCTCAAGAGAGCACAATCTAATAGAAGTCGGCAATGGAAACAACAAAATGTTAAAGGAATGGAGCCCATTAGTGTGCGATATTTGCAATAGGAAATATTTCGACAAAAAATCTCTGCGGTATCATTTGAAGTTCAATCACACTTACTCGAAATGTCCAGACTGTCCTGCCCAGTTCTCAGAGAACGATCTGCCGCTACATAGAAACGACGCACACGGCACGCCGATTCCCACTTGTGGAATATGCGGTTATAGGAACAAACGAAAAGATCGCGTGTTACACCATCAGAGACAGGTGCATATGAACGAGAAAACGGTCCCTTGCAAGCTGTGTGACATGAAATTTTTCGACAAGGGATACTTGCGCAGGCATATGATAACGCACAGCCCTCAGAAGATACACGAATGCTCGTATTGCCACAAGAAGTTTCCGAGGAAGAACACGTTGCGTATGCACGAAAAAATACATAAAGGAGAGAAGAACAAGGTGTGCGCGATCTGTGGAGAGCGGTTCGTGCAGAAGGCCAGCCTTAACTACCATATGGGGAAGCATCATCCAGAAGCGTACTTGCCGTTCAAACTGGAGCTGAGCGAGTATCCGTTCATCAAGATCAGCGAACACTCCGACGGCACGAGATATCATTGCGAGACATGCGAATCCACTTCGCACACTATCGATATGTTAAAGCGGCACATTCTCATGAAACACATCACAAGCCAATGCCCCATGTGCGACAAAATTGTAACTGCATCCGAGAAACGACAACATCTCTCACGAGAGCACAATCTAATAGAAGTTGGCAATGGAAACAACAAAATGTTAAAGGAATGGAGCCCATTAGTGTGCGATATTTGCAATAGGAAATATTTAGACAAAAAAGCTATGCGGTATCATTTGAAGTTCAATCACACTTACACGAAATGTTCAGACTGTCCTGCCCAGTTCTCAAAGAAAGATCTCCCGCTACATAGAAACGACGCACACGGCACGCCGATTCCCACTTGTGGAATATGCGGTTATAGGAACATACGAGGAGCTCTCGTGTTACGCCATCAAAGAAAGGTGCATATGAACGAGAAAACGGTTCCTTGCAAGCTGTGTGACATGAAATTTTTCAACAAGGGATACTTGAACAGGCATATGATAACGCACAGACCTGAGAAGATACACGAATGCTCGTATTGCCACAAGAAGTTTCCGAGGAAGAATACGTTGCGTTTGCACGAAAAAATACATAAAGGAGAGAAGAACAAGGTGTGCGCGATTTGTGGAGAGCGGTTCGTGCAGAAGGCCAGCCTCAACTACCATATGGGGAAGCATCATCCAGAAGCGTACTTGCCGTTCAAGCTGGAGCTGAGAGAGTATCCGTTCATCAAGATCAGCGAACACTCCGGCGGCACGAGATATCATTGCGAGACTTGCAAATCCACTCTGCACACTATCGATATGTTAAAGCGGCACATTCTCATGAAACACATCAGAAGCCAATGCCCCATGTGCGACAAAATTGTAACTGCATCCGAGAAACGACAACATCTCTCAAGAGAGCACAATCTAGTAGAAGTCGGCACTGGAAACAACAAAATGTTAAAGGAATGGACCCCATTAGTGTGCGATATTTGCAATAGGAAATATTTCGACAAAAAAGCTATGCGGTATCATTTGAAGTTCAATCATTCTTACTCGAAATGTCCAGACTGTCCTGCCCAGTTCTCAAAGAATGATCTGCCGCTACATAGAAACGACGCACACGGCACGCCGATTCCCACTTGTGGAATATGCGGTTATAGGAACACACGAAAAGATCGCGTGTTACTCCATCAAAGAAAGGTGCATATGAACGAGAAAACGGTTCCTTGCAAGCTGTGTGACATGAAATTTTTCAACAAGGGATACTTGAACAGGCATATGATAACGCACAGACCTGAGAAGATACACGAATGCTCGTATTGCCACAAGAAGTTTCCGAGGAAGAACACGTTGCGTTTGCACGAAAAAATACATAAAGGAGATAAGAACAAGGTGTGCGCGATCTGTGGAGAGCGGTTCGTGCAGAAGGCCAGCCTCAACTACCATATGGGGAAGCATCATCCAGGAGCGCGCTTGCGGTTCAAGCTGGAGCTGAGCGAGTATCCGTTCATCAAGATCAGCGAACACTCCGGCGGCACGAGATATCATTGCCAGCCATGCAAATCCACTCTGCGCACTATCTATATATTAAAGCAGCACATTCTCTTGAAACACATCACAAGCCAATGCCCCATGTGCGACAAAATTGTAACTGCATCCGAGAAACGACAACATCTCTCACGAGAGCACAAACTAGAAGAAGTCGGCACTGGAAACGACAAAATATTAAAGGAATGGCGCCCATTAGTGTGCGATATTTGCAATAGTAAATATTCCACCAAAAAAGCTATGCGGTATCATTTGAAGTTCAATCACACTTACTCGAAATGTCCAGACTGTCCTGCCCAGTTCTCAGAGAAAGATCTGCCGCTACATAGAAACGACGCACACGGCACGCCGATCCCCACTTGTGGAATATGCGGTTTCAGGAACGCAATAGAAGCTCGCGTGTTACTCCATCAAAGACAGGTCCACATGAAAGAGAAAACAATCCCTTGCAAGCTGTGCGATTTGAAATTTTTCAACAAGAGAAACTTGAACAGGCATATGATAACACACAGTCCTGAGAAGATACACGAATGCTCGTATTGCCACAAGAAGTTTCCGAGGAAGAACACGTTGCGTATGCACGAAAAAATACATAAAGGAGAGAAGAACAAGGTGTGCGCGATCTGTGGAGAGCGGTTCGTGCAGAAGGCCAGCCTCAACTACCATATGGGGAAGCATCATCCAGAAGCGTGTTAA
- Protein Sequence
- MSFGRSYGSPRTPHPTPAHRRARARPRDQENLDLPFKLELSEYPFIKISEHSGGTRYHCETCKSTLRTIYILKRHILMKHITSQCPMCDKIVTASEKRQHLSREHNLIEVGNGNNKMLKEWSPLVCDICNRKYFDKKSLRYHLKFNHTYSKCPDCPAQFSENDLPLHRNDAHGTPIPTCGICGYRNKRKDRVLHHQRQVHMNEKTVPCKLCDMKFFDKGYLRRHMITHSPQKIHECSYCHKKFPRKNTLRMHEKIHKGEKNKVCAICGERFVQKASLNYHMGKHHPEAYLPFKLELSEYPFIKISEHSDGTRYHCETCESTSHTIDMLKRHILMKHITSQCPMCDKIVTASEKRQHLSREHNLIEVGNGNNKMLKEWSPLVCDICNRKYLDKKAMRYHLKFNHTYTKCSDCPAQFSKKDLPLHRNDAHGTPIPTCGICGYRNIRGALVLRHQRKVHMNEKTVPCKLCDMKFFNKGYLNRHMITHRPEKIHECSYCHKKFPRKNTLRLHEKIHKGEKNKVCAICGERFVQKASLNYHMGKHHPEAYLPFKLELREYPFIKISEHSGGTRYHCETCKSTLHTIDMLKRHILMKHIRSQCPMCDKIVTASEKRQHLSREHNLVEVGTGNNKMLKEWTPLVCDICNRKYFDKKAMRYHLKFNHSYSKCPDCPAQFSKNDLPLHRNDAHGTPIPTCGICGYRNTRKDRVLLHQRKVHMNEKTVPCKLCDMKFFNKGYLNRHMITHRPEKIHECSYCHKKFPRKNTLRLHEKIHKGDKNKVCAICGERFVQKASLNYHMGKHHPGARLRFKLELSEYPFIKISEHSGGTRYHCQPCKSTLRTIYILKQHILLKHITSQCPMCDKIVTASEKRQHLSREHKLEEVGTGNDKILKEWRPLVCDICNSKYSTKKAMRYHLKFNHTYSKCPDCPAQFSEKDLPLHRNDAHGTPIPTCGICGFRNAIEARVLLHQRQVHMKEKTIPCKLCDLKFFNKRNLNRHMITHSPEKIHECSYCHKKFPRKNTLRMHEKIHKGEKNKVCAICGERFVQKASLNYHMGKHHPEAC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -