Acni023786.1
Basic Information
- Insect
- Aethes cnicana
- Gene Symbol
- -
- Assembly
- GCA_963971205.1
- Location
- OZ020298.1:6074189-6079673[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.5 34 5.8 4.3 3 23 2 23 1 23 0.94 2 26 9.7 6.6e+02 1.7 0.2 2 23 50 72 49 72 0.84 3 26 1.1 75 4.7 0.9 2 23 95 117 94 117 0.92 4 26 0.053 3.6 8.8 0.3 1 23 123 146 123 146 0.94 5 26 2e-05 0.0013 19.6 0.9 2 23 153 175 152 175 0.96 6 26 0.16 11 7.4 0.2 2 23 181 203 180 203 0.90 7 26 0.0066 0.45 11.7 0.5 1 23 210 233 210 233 0.97 8 26 0.0003 0.02 15.9 0.9 1 23 239 261 239 261 0.95 9 26 0.18 12 7.1 5.1 1 23 310 333 310 333 0.95 10 26 7.2 4.9e+02 2.1 0.1 2 23 360 382 359 382 0.84 11 26 1.7 1.2e+02 4.1 0.5 3 23 406 427 404 427 0.92 12 26 0.007 0.48 11.6 0.0 1 23 433 456 433 456 0.93 13 26 9.4e-06 0.00064 20.6 0.6 2 23 463 485 462 485 0.96 14 26 0.2 13 7.0 0.2 2 23 491 513 490 513 0.91 15 26 0.0066 0.45 11.7 0.5 1 23 520 543 520 543 0.97 16 26 0.00016 0.011 16.7 0.9 1 23 549 571 549 571 0.95 17 26 0.00038 0.026 15.6 2.2 1 23 577 599 577 599 0.98 18 26 0.51 35 5.7 4.8 1 23 648 671 648 671 0.93 19 26 0.28 19 6.6 0.1 2 23 698 720 697 720 0.89 20 26 0.0025 0.17 13.0 0.1 1 23 771 794 771 794 0.94 21 26 8.5e-06 0.00058 20.8 0.4 2 23 801 823 800 823 0.96 22 26 0.11 7.3 7.9 0.5 2 23 829 851 828 851 0.95 23 26 0.0003 0.02 15.9 0.6 1 23 858 881 858 881 0.98 24 26 0.0012 0.085 14.0 1.5 1 23 887 909 887 909 0.95 25 26 5.9e-05 0.004 18.1 3.1 1 23 915 937 915 937 0.98 26 26 1.1e-06 7.3e-05 23.6 1.8 1 23 943 965 943 966 0.96
Sequence Information
- Coding Sequence
- ATGTGTTTTTACTGCTCGTGTCCTTTCGACGACTGCGCGAAGCTGAAACAACATACGAAAGAGGAACACGAAGGAGCGAGGCTGACAACTGTCTTGCAATCCACTGTGAGCAAAGTCAAGAGTATTAAGCTAGAGGTTTCTGAGCTGACTTGTAAGAAATGTGATAACCCGATGAGAAATATCGAAGAATTTTTGCAACACGTCTCGGAAGTACACGAAATGAAGTTCAATAAAGAAGCTTCGGATTTCCTCTATTCATTTATACTCGCAGAAAGGAATATGACATGTCTAGAGTGTGGATTGACGTTCCAATTTTTCGGCCCGCTTCTTATCCACACGCACAAGTATCACACTAAGATTAAACCGTTTCTCTGCGAAATATGTGGCGCAGCGTTTATAGCTCGAAAGAATGTACACAGCCACAAAAAGATTGTACATTCCGACATTTGCAAACTTCAATGCAAGAAATGCAACGAAATCTTCCCTACGCAATACAAGTTGACTGACCACATGCAAAAAGTGCACAAACCGGGGAGGTTGAAGTGCCCAAAATGCCCAGAGGTGCTCGGCAGTCGGTATTTGAAGAAGCGCCATCTGGCGTTTGTTCACGACGTAAAGAGCATTCAGTTTCAATGTGACGCGTGTCCGAAAGTGTTCGAGTTAAGAAATAAACTTTTGAACCATAAACAGAGAGTGCATTTAAAGGAGAAGAACTTTACTTGCGAAGTTTGCGGATTTAAAGTGTTTAGTAAGGAGCTTTTGAAGAGGCACATGGTCAAACATGACAATTCAAGGCCCTTCGAATGTGACCTGTACGACGATGACCTGATTGATCAACATCATCGAAAGAAAAAAGACCTTTCCCATGTGCTCACCATAATCATACAAAATTCCACCGTCATACCCTTTAAATGGCACTCCAATAATTTCATGTGTTTCTACTGCTCGTGTCCCTTCGAAGACTGCGCGAAGCTAAAACAACATACGAAAGAGGAACACGAAGGAGCGAGGCTGACAACTGTCCTGCAATCCACTGTTAGCAAAGTCAAGAGTATTAAGCTAGAGGTTTCTGAGCTGACTTGCAAGAAATGTGATGCCCCGATGAGAAATATCGAAGAGTTCTTGCAACACGTTTCGGATGTACACGATATGAAGTTTAATAAAGAAGCGTCAGATTTCCTCTATTCATTCGTACTGGCAGACAGGAACATGGCGTGTCTAGAATGTGGATTAACGTTCCAATTTTTTGGCCCCCTTCTAATCCACACGCACAAATATCACACAAAGAGTAAACCGTTTCTTTGCGAAATCTGTGGTGAAGCGTTCATAGCTCCAGAGAACGTACAGAGCCACAAAAAAAACGTACATTCCGACATTTTCAAACTTCAATGCAAGGAATGCAACGAAACCTTCCCTACGCAATACAAGCTGACTGACCACATTCAAAAAGTGCACAAACCGGGGATGATGAAGTGCCCAAAATGCCCAGAGGTGCTCGGCAGTCGGTATTTGAAGAAGCGCCATTTGGCGTTTGTTCACGACGTAAAGAGTATTCAGTTTCAATGTGACGCGTGTCCGAAAGTTTTCGAGCTACGAAATAAACTTTTAAATCATAAACAGAGAGTGCATTTAAAGGAGAAGAactttacgtgcgaaatttgcgGATTTAAAGTGTTTAGTAAGGAGCTTTTGAAGAGGCACATGGTCAAACATGATGATTCAAGGCCCTTCGAATGTGACCTGTGTAAGAAGGCTTTCCAAAGGAAGAAGACGTTGGACTACCACAGAAGGATTCATACGAATGACAAGAGACATCAATGCAAAGAGTACGACGATGACCTGATTGACCAACAGCTTCGAAGGAAAAAAGATCTTTCCCATCTGCTCACCATAATCATAGAAAACTCCACCGTCATACCCTTTAAATGGCACTCCCATAAATTCCTGTGTTTCTACTGCTCGTGCCCCTTCGACGACTGCGCGAAGCTGAAACAACATACGAAAGAGGAACACGAGGAAGCGAGGCTGACAACTGTCCTGCAAGCCGCAGTGAGTGAAATCGGGAGTATTAAGCTGGAGGTTTCTGAACTGACTTGCAAGAAATGTGATACCCCGGTGAGAAATATCGAAGAGTTCTTGCAACACGTTTCGGATGTACACAATATGGAGTTCAATAAAGAAGCATCAGTTTTCCTCTATTCATTCGTACTGGCAGACAGGAACATGGCTTGTATAGAATGTGGATTGACGTTCCAATTTTTCGGGCCACTTCTAATCCACACGCACAAGTATCACGCTAAGAGTAAACCGTTTCTCTGCGAAATATGCGGTGAAGCGTTCATAGCTAGAAAGAACGTACAAAACCACAAAAGGAACGTACATTCCGACATTTGCAAACTTAAATGCAAGGAATGCGACGAAACATTCCCTACGCAATACAAGCTGACCGCCCACGTGCAAAAAGTGCACAAACCGCGGAAGATGAAGTGTCCAAAATGCCCGGAGGTGCTCGGGAGTCGGCATTTGAAGCAGCGCCATCTGGCGTCTGTTCACGACGTGAAGAACATTCAGTTTCAATGTGACGCATGTCCAAAAGCGTTcgacttaaaaaataaacttttgaAGCATCAACGGAGAGTGCATTTAAAGGAGAAGAactttacgtgcgaaatttgcgGATTTAAAGTTTTTAGTAAGGGGCATTTAAAGGGGCATATGGTCAAACATGATGATTCGAGGCCCTTCGAATGTGACCTGTGTAAGAAAACTTTCCAAAGGAAGAAGACGTTGGAGTACCATAGAAGGATTCATACGAATGACAAGAGACATCAATGCAAAGAGTGTGGGCAGGCGTTCGTACAGTGGACGAGTCTTAAAGTGCACATCAAAGTGCACCACCCCAACCCCAACGTCTCAAATGCTAATCAGTGA
- Protein Sequence
- MCFYCSCPFDDCAKLKQHTKEEHEGARLTTVLQSTVSKVKSIKLEVSELTCKKCDNPMRNIEEFLQHVSEVHEMKFNKEASDFLYSFILAERNMTCLECGLTFQFFGPLLIHTHKYHTKIKPFLCEICGAAFIARKNVHSHKKIVHSDICKLQCKKCNEIFPTQYKLTDHMQKVHKPGRLKCPKCPEVLGSRYLKKRHLAFVHDVKSIQFQCDACPKVFELRNKLLNHKQRVHLKEKNFTCEVCGFKVFSKELLKRHMVKHDNSRPFECDLYDDDLIDQHHRKKKDLSHVLTIIIQNSTVIPFKWHSNNFMCFYCSCPFEDCAKLKQHTKEEHEGARLTTVLQSTVSKVKSIKLEVSELTCKKCDAPMRNIEEFLQHVSDVHDMKFNKEASDFLYSFVLADRNMACLECGLTFQFFGPLLIHTHKYHTKSKPFLCEICGEAFIAPENVQSHKKNVHSDIFKLQCKECNETFPTQYKLTDHIQKVHKPGMMKCPKCPEVLGSRYLKKRHLAFVHDVKSIQFQCDACPKVFELRNKLLNHKQRVHLKEKNFTCEICGFKVFSKELLKRHMVKHDDSRPFECDLCKKAFQRKKTLDYHRRIHTNDKRHQCKEYDDDLIDQQLRRKKDLSHLLTIIIENSTVIPFKWHSHKFLCFYCSCPFDDCAKLKQHTKEEHEEARLTTVLQAAVSEIGSIKLEVSELTCKKCDTPVRNIEEFLQHVSDVHNMEFNKEASVFLYSFVLADRNMACIECGLTFQFFGPLLIHTHKYHAKSKPFLCEICGEAFIARKNVQNHKRNVHSDICKLKCKECDETFPTQYKLTAHVQKVHKPRKMKCPKCPEVLGSRHLKQRHLASVHDVKNIQFQCDACPKAFDLKNKLLKHQRRVHLKEKNFTCEICGFKVFSKGHLKGHMVKHDDSRPFECDLCKKTFQRKKTLEYHRRIHTNDKRHQCKECGQAFVQWTSLKVHIKVHHPNPNVSNANQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -