Acni023800.1
Basic Information
- Insect
- Aethes cnicana
- Gene Symbol
- -
- Assembly
- GCA_963971205.1
- Location
- OZ020298.1:6146721-6154782[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.0071 0.48 11.6 0.8 1 23 28 51 28 51 0.95 2 27 0.3 20 6.5 0.1 2 23 77 99 76 99 0.91 3 27 0.12 8.5 7.7 2.9 2 23 123 144 122 144 0.97 4 27 0.0015 0.1 13.7 0.5 1 23 148 170 148 170 0.97 5 27 0.012 0.83 10.9 0.4 1 23 177 200 177 200 0.97 6 27 0.0025 0.17 13.0 1.3 2 23 208 230 207 230 0.95 7 27 7.8e-06 0.00053 20.9 0.9 2 23 236 258 235 258 0.97 8 27 0.8 54 5.1 1.0 1 23 264 287 264 287 0.90 9 27 0.049 3.3 9.0 0.2 1 14 293 306 293 308 0.90 10 27 2.2 1.5e+02 3.8 0.8 1 23 373 396 373 396 0.89 11 27 1.8 1.2e+02 4.0 0.1 2 23 422 444 421 444 0.93 12 27 0.00035 0.023 15.7 0.6 1 23 492 514 492 514 0.99 13 27 2.1e-05 0.0014 19.6 0.5 1 23 519 542 519 542 0.96 14 27 0.0092 0.63 11.2 0.6 2 23 550 572 549 572 0.95 15 27 0.0055 0.37 12.0 2.4 2 23 580 602 579 602 0.96 16 27 0.00034 0.023 15.7 7.0 1 23 608 630 608 630 0.98 17 27 5e-06 0.00034 21.5 0.9 1 23 636 658 636 658 0.99 18 27 2.2 1.5e+02 3.8 0.8 1 23 738 761 738 761 0.89 19 27 1.8 1.2e+02 4.0 0.1 2 23 787 809 786 809 0.93 20 27 0.11 7.3 7.9 2.4 2 21 832 851 831 853 0.94 21 27 0.0016 0.11 13.6 0.6 1 23 857 879 857 879 0.99 22 27 3.3e-06 0.00022 22.1 0.1 1 23 884 907 884 907 0.94 23 27 0.28 19 6.6 0.6 2 23 915 937 914 937 0.93 24 27 0.0063 0.43 11.8 2.8 2 23 945 967 944 967 0.95 25 27 0.00013 0.009 17.0 2.9 1 20 973 992 973 995 0.93 26 27 1.7e-06 0.00011 23.0 2.6 1 23 1001 1023 1001 1023 0.99 27 27 0.0003 0.021 15.9 3.8 1 23 1029 1052 1029 1052 0.97
Sequence Information
- Coding Sequence
- ATGCAGAAACAGTGGCACAACCTGACGACATTGCTCAAGTACTCTAACGCCACCCCGTTTAAGGATAGGAACGACGCCGGGTACATTTGCGCGTATTGCTTCAAAACCTACCCAGACCCCGAAGTTTTACGCCAGCACACTCAACACGACCACGTGAAGGAAAAACCTACGTACAAAGCCGGCTCAGGCATGAGCAGCTTCGTCGCTTTCCTAGACGTGGTCGACCTAAAATGCACGCTATGCGATTTGCGAATAGACAACCTCAAAGATCTAACCGAACACCTAGTCCAAGTCCACGACAAGAAGTATTATCTAGGCATCACTGACTATTTCCAACCGTTCAAACTGGCCAACGAACAGCAAATCAAGTGCTGCCTCTGTAGCGAAGCTTACCACAACATGAAGCTGCTAATGCAACACATGAATGTGCATTACAGGAATTTCATTTGTACCACGTGTGGGGCAGGATTTGTCAATAGCTTCAGGCTGAACAGGCATGAGACTACACACGGCAAGAAGAAGTCTAGTTTCCCTTGCAGACATTGCGGTTTGGTATTCGCCGCCGAGTCGAAGAAGAAAGCTCATGTCAACACGGAACATAAAGGGATCGCTGGGGACAGTGTCTGTCAAATTTGCAAGGCGCGATTCAAGAACTACTACCAGAAAACAAGGCATATGATGCAGGTGCACAATGTCGAAGGGATAAAGTGCGATATGTGCGAgaaaaagttcaatttgaaatcGAATTTGATGTTGCATATGCGGAGTGTGCATCTGAAAGAACGCCCGTACGAATGTTCCGTTTGTAACATGGGTTTCTTCATAAAGAGGCACATGCTGGGGCATTACATGGCGACCCACACGAACGAGAGGAAATTCAAGTGTGACGTTTGTGGCAAGGCCTACGCCACTCAGAACAGTGTACCGCGAAGAACTAGGATTATAACGACCGGTGCTAAAAAAACGGAAAGCAACCTGAAGTCTAGTGCTAAGCCAGTATCGCGGCAGGCGGTCGCTTCGAAGTTAAAGGAACATTTAAGGAAGAACGAGTACAATCTCGCTCAAATATTACTAAATTCAAACGCTAGTCCGATCAGAGCGTACGACACGAAAGGGTATTTGTGCGCTTTGTGCAACGACAAGTACTCTGAACCGCGAACCTTGAAGAAGCACTTCCTAGAAAAACACAACGACGATAAATTGATCAAAGACATATGTCGCACCATAGTAAAACGCGTTCCGAAACTAGACATCACGTTTTTAAACTGCGCTCTATGCGATACAGATTTTTCTGCACTTGACCCTTTCATGCTCCACTTGACAACGGCACACGATAAGCAACTGCACATGGACATCAAAAGCCAAATATTGCCATTTAAATTCGACACTCCCGAGTTGCACTGTGCTATATGCATGACAGAGTACTCGAGCTTCAAACTGCTGCAACACCACATGAATTGCCACTTCAGGAATTACGTATGCGAAGTCTGCAACGCTGGTTTCGCCTCCCATAAATTTCTAGTGAACCATTTAAGGACTCACGGGAACGGCCAACACGAATGTGGAGAATGTGAGAAGACATTCATCAATGCATCCAAACTGCGTGCTCACGCGAAGCGGGCTCATATGGGCTTCGGTAAACGCAACAAATGCAAATTCTGCGACGAGAGATTCTCCGATTACTGGAAGATGGTGGATCACATGGTTAGAGAGCACGGAATGGCTCGGCCGGTGTTGAAGTGTCACGCGTGTGAACGCTCCTTCGACGATCGGAGAGCTCTGACGTATCACACGAAGAAAGATCACCTCATGGAACGGAGCCACAAATGCCCCGATTGCGATATGACGTTCTTCAAGAAAAGCTGCTTGCAGAAACATCTGACGAAGCACACGGGAGTGAAGAGGTTTAAATGCGAGGTGTGTTCGAAGCCGTTCGCCAGGAAGACCACGCTCACTGAGCACACGAGGATCCACATGGACGACAGGGGGTTCTCGTGCGGCCATTGCGGCTTACCGCGAAGAACTAGAATTATAACGGCCGGTGCTAAAAAAACGGAAAGCAACCTGAAGTCTAGTGCTAAGCCAGTATCACGGCAGGAGGTCGCTTCGAAGTTAACATCAATGAAACATTCAAAGAAGAACGAGTACAATCTCGCTCAAATATTACTAAATTCAAACGCTAGTCCGATCAGAGCATACGACACGCTAGGTTACTTGTGCGCTTTGTGCAACGACAAGTACTCTGAACCGCGAACCTTGAAGAAACACTTCCTAGAAAAACACAACGACGACCAATTGATCAAAAGCAAATGTCGCACCATATTAAACCAAGTTGCTAAACTAGACATCACATTTTTAAACTGCGCTCTATGCGATACAGATTTCTCAGCACTTGACCCTTTCATGCTCCACTTGACAACGGCACACGATAAGCCTCTACACATGGACATCAAAAGCCAAATATTGCCATTTAAATTCGACACTCCCGAATTGCGCTGTGCTATCTGCACGACAGAGTACTCGAGCTTCAAAATGCTACAACAGCACATGAATTGCCACTTCAGGAATTACGTATGCCACGTCTGCAACGCCGGATTCGTCGCCGAGAAGTTTCTAATGAATCATTTAAGGACTCACGGGAACGGCGAATACGAGTGTGGAGAATGTGGGAAGACATTCATCAATGCATCCAAACTGCGTGCCCACGCGAAGGGGACTCACATGGGCTTCGGTAAACGCAACAAATGCAAATTCTGCGACGAGAGATTCTTCGATTACTGGAGGATGGTGGATCATATGGTTAGAGAGCATGGGATGACTCGGCCGGTGTTGAACTGTCACGCGTGTGAACGCTCCTTCGACAATCAGAGATCTCTGTCGCAGCACACGAAGAAAGATCACCTCATGGAACGGAGCCACAAATGCCCCGAATGCGATATGACGTTCTTCAAGAAAAGCAGCCTGCAGAAACATCTGCCGAAGCACACGGGAGTGAAGAAGTTTAAATGCCAGGTGTGTTCGAAGCCGTTCGCCAGGAAGCACACGCTCACTGAGCACATGAGGATCCACACGGACGACAGGCGGTTCTCGTGTGGCCACTGCGGACAGGCGTTCATTCAGAAGTGCAGTCTGAAAGGACATCTGCGATCCAAGCACGGAGATGTGTTAATTTGA
- Protein Sequence
- MQKQWHNLTTLLKYSNATPFKDRNDAGYICAYCFKTYPDPEVLRQHTQHDHVKEKPTYKAGSGMSSFVAFLDVVDLKCTLCDLRIDNLKDLTEHLVQVHDKKYYLGITDYFQPFKLANEQQIKCCLCSEAYHNMKLLMQHMNVHYRNFICTTCGAGFVNSFRLNRHETTHGKKKSSFPCRHCGLVFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNVEGIKCDMCEKKFNLKSNLMLHMRSVHLKERPYECSVCNMGFFIKRHMLGHYMATHTNERKFKCDVCGKAYATQNSVPRRTRIITTGAKKTESNLKSSAKPVSRQAVASKLKEHLRKNEYNLAQILLNSNASPIRAYDTKGYLCALCNDKYSEPRTLKKHFLEKHNDDKLIKDICRTIVKRVPKLDITFLNCALCDTDFSALDPFMLHLTTAHDKQLHMDIKSQILPFKFDTPELHCAICMTEYSSFKLLQHHMNCHFRNYVCEVCNAGFASHKFLVNHLRTHGNGQHECGECEKTFINASKLRAHAKRAHMGFGKRNKCKFCDERFSDYWKMVDHMVREHGMARPVLKCHACERSFDDRRALTYHTKKDHLMERSHKCPDCDMTFFKKSCLQKHLTKHTGVKRFKCEVCSKPFARKTTLTEHTRIHMDDRGFSCGHCGLPRRTRIITAGAKKTESNLKSSAKPVSRQEVASKLTSMKHSKKNEYNLAQILLNSNASPIRAYDTLGYLCALCNDKYSEPRTLKKHFLEKHNDDQLIKSKCRTILNQVAKLDITFLNCALCDTDFSALDPFMLHLTTAHDKPLHMDIKSQILPFKFDTPELRCAICTTEYSSFKMLQQHMNCHFRNYVCHVCNAGFVAEKFLMNHLRTHGNGEYECGECGKTFINASKLRAHAKGTHMGFGKRNKCKFCDERFFDYWRMVDHMVREHGMTRPVLNCHACERSFDNQRSLSQHTKKDHLMERSHKCPECDMTFFKKSSLQKHLPKHTGVKKFKCQVCSKPFARKHTLTEHMRIHTDDRRFSCGHCGQAFIQKCSLKGHLRSKHGDVLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -