Acni022790.1
Basic Information
- Insect
- Aethes cnicana
- Gene Symbol
- Zfa
- Assembly
- GCA_963971205.1
- Location
- OZ020297.1:1592232-1622145[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.3e-05 0.00092 20.2 0.1 1 23 23 45 23 45 0.97 2 17 1.2e-05 0.00084 20.3 1.0 1 21 51 71 51 72 0.96 3 17 0.00026 0.018 16.1 0.8 2 23 85 107 84 107 0.95 4 17 0.00034 0.023 15.7 0.4 1 23 113 136 113 136 0.96 5 17 3.2e-06 0.00022 22.1 0.3 1 23 145 167 145 167 0.98 6 17 0.00013 0.0089 17.0 0.1 1 23 173 196 173 196 0.96 7 17 0.00054 0.037 15.1 1.8 1 23 404 426 404 426 0.98 8 17 0.017 1.1 10.4 0.8 1 23 433 455 433 455 0.97 9 17 2.9 2e+02 3.4 0.2 1 23 459 482 459 482 0.86 10 17 8.6e-05 0.0059 17.6 5.7 1 23 489 512 489 512 0.94 11 17 0.00011 0.0077 17.2 0.1 3 23 519 540 518 540 0.96 12 17 0.00016 0.011 16.8 0.3 1 23 553 575 553 575 0.95 13 17 0.00013 0.0086 17.1 1.0 1 22 581 602 581 606 0.94 14 17 0.00013 0.0089 17.0 0.3 3 23 616 637 614 637 0.95 15 17 0.00034 0.023 15.7 0.2 1 23 643 666 643 666 0.97 16 17 1.5e-06 9.9e-05 23.2 0.6 1 23 675 697 675 697 0.99 17 17 0.015 1 10.6 0.3 1 23 703 726 703 726 0.92
Sequence Information
- Coding Sequence
- ATGAATTCCAGTAATCCGCACCTGCGGCATCACCCGCCAGAAGGTTCGAGCGGCATCCCCAAGCCCTACTCATGCCCGGAGTGCGGGAAGGCCTTCCGAGCCGCCTCCCTGCTTCGGCTACACGCGACCAAGCATTCTGACAGGCGAGATTACTACTGCGTCGAATGTGACAAAAGCTTTAAGTCGGCCACGTCTCTAAAGCATCACCTCAAAGCTGCGGCCGTGCATGCACCCAACGCCGAATTGACGCTTTCGTGCGAACACTGCGACATGCGCTTTGCGGTGAGACGCAGTTTGGAGAGACACGTGAACAGCGTTCATTTGAATTTCAAACCTTTCCAGTGCGACCAATGTGAAAAGGCGTACGTGAGCGCACGGTCTCTAACCGACCACAAAAAGCTAATCCATGAAGGATACAAAAAACCTCTGCGCTTCCCCTGCCCTATGTGCGACAAGGTTTTTCGACTAAACAAAGTCCTCAAAGATCACATCCGCACTCACACCGGGGAGCGGCCGTTTCAATGCAGCATTTGTCCGGCAAAGTTCACCCAGGCCTCTGTGCTCAGGACTCACGTCAATCTCATCCACCTCAAGCTCACGAGAGCTGGGAAACCTAAAGGTgTTGACGAGTTGTTTCTATGCTATATTTGTAGACGGACCGCTCAGCAGGCCGAGCTGTTCATGCAGAATGTCCAGAGCAACCAGATCCTATTGGAAAACTACCATACTCTAACAGAATCAACACTACAATTGACTCGTGTAGAGCTGCGCACACCTCATCAGCTCAGCTCCGTATTTCTGGATACCTTGGAGTTAGGAGGCGATGACTCCGCAGTGGAAGAGTCTGTGTCTGTTCTGAACACTCGAGGGATGGTGAAGATCAAACAAGAGATGAAGCAGGAGGGATGGTTGGACAGAGACTGCTTGGACGACGATACTGGTTTCCAAGACTATGTCAAGGAAGAAGACTTCCCTCTCAAGGCATTGCTGAAAGAAGAACTCGAACTGGAGGAGATAGACTTAAAACGACTGAAGAAAAACCTCAAAAAAGGGAAATCTAAAAGAAGCAGAAAAAAGTATGAACAGGAGTCAGCTATAAAGAAAGAAGTAGATGACTTATGCGACATAGAAACCATATACATCACGAGGGAGCAGTGTCTAGAAGAACGAGAGAGAATGGCCCAAAATCGTCGATATGTATTGTCTACATACAAATGCGAAGATTGCGTCAAAGGGTTCAACTATAAAGATAGTTACGATAAACACCGGGAGAAACATAGAGAGAGTAACGGCGACTACGCATGCGACATATGCAAGCAACGGATGAGCACCGAAGACAAGTTGATAAGCCACAAGAGATACCATGAAGTCCGCTACCGGTGCCCAGCGTGTGGGCTGACCCGCATCAGCCGCCTGACGGTGAAGGATCACTACTCGGCGTTCCACACCCCGAGCCACCATAGACACTGTTGCCCGCACTGCCCGAAGAGCTTCAAACGCCAGGTGTCATGGCGGAAGCATATATCGAACGTGCACAGCCGCAAGCGGGTTGCATGCGCGTATTGCAATAAGACGTACGCCAACAAAGATGTTCTTAAAGCGCATATGATAGTTCAGCACCCTAAGGAGGTGTCAGCGGGCGAGGTGCCGAAAGCCCACGCGTGTCCCACGTGTGGGATGGCCTTCAAGGCGCCCTCGCAGCTCAAGATACACAGTCTCAAGCACTCGCTCAATAAGGAATACTACTGCGTCGAGTGCGACAAGAGTTTTAAATCGGCGTCGATCCTGAAGCACCATCTGAAGACGGTGTCCCCCCACGTCGACTACACGGAACTGCCCCTGGCGTGCGAACAATGCGGCAAGCGGTTCGCTATCCGGAGGGACCTAGAGAGACACACAAACAGGGTCCATCTAAATATTAAACCGTTCCAATGCGACAGATGCGAAAAGGCGTACGTGAACGCGTGGTCTCTGAACGAGCACAAGCGACTGATACACGAGGGCTTCAAGCGGCCGCTCAAGTATCCCTGTCCGATGTGCGACAAAGTTTTCGATCGAAATCACGTCTTAAAGGGTCACATACGAACTCACACAGGCGAGCGTCCGTACCAATGTAGCCACTGCCCCGCGCAGTTCAGCCAAGCCAGCATTTTGGGGACCCACGTCAAACTAATACACCTGAAACTAACGCGTGACGGACGACCCAAACCTGCTCTCGTTAAATAG
- Protein Sequence
- MNSSNPHLRHHPPEGSSGIPKPYSCPECGKAFRAASLLRLHATKHSDRRDYYCVECDKSFKSATSLKHHLKAAAVHAPNAELTLSCEHCDMRFAVRRSLERHVNSVHLNFKPFQCDQCEKAYVSARSLTDHKKLIHEGYKKPLRFPCPMCDKVFRLNKVLKDHIRTHTGERPFQCSICPAKFTQASVLRTHVNLIHLKLTRAGKPKGVDELFLCYICRRTAQQAELFMQNVQSNQILLENYHTLTESTLQLTRVELRTPHQLSSVFLDTLELGGDDSAVEESVSVLNTRGMVKIKQEMKQEGWLDRDCLDDDTGFQDYVKEEDFPLKALLKEELELEEIDLKRLKKNLKKGKSKRSRKKYEQESAIKKEVDDLCDIETIYITREQCLEERERMAQNRRYVLSTYKCEDCVKGFNYKDSYDKHREKHRESNGDYACDICKQRMSTEDKLISHKRYHEVRYRCPACGLTRISRLTVKDHYSAFHTPSHHRHCCPHCPKSFKRQVSWRKHISNVHSRKRVACAYCNKTYANKDVLKAHMIVQHPKEVSAGEVPKAHACPTCGMAFKAPSQLKIHSLKHSLNKEYYCVECDKSFKSASILKHHLKTVSPHVDYTELPLACEQCGKRFAIRRDLERHTNRVHLNIKPFQCDRCEKAYVNAWSLNEHKRLIHEGFKRPLKYPCPMCDKVFDRNHVLKGHIRTHTGERPYQCSHCPAQFSQASILGTHVKLIHLKLTRDGRPKPALVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -