Acni025174.1
Basic Information
- Insect
- Aethes cnicana
- Gene Symbol
- -
- Assembly
- GCA_963971205.1
- Location
- OZ020301.1:550720-558764[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.011 0.78 10.9 0.0 3 23 26 46 24 46 0.96 2 20 3.8e-06 0.00026 21.9 3.9 3 23 54 74 52 74 0.97 3 20 2.7e-06 0.00019 22.3 0.9 1 23 80 102 80 102 0.97 4 20 0.0088 0.6 11.3 3.2 1 23 108 130 108 130 0.98 5 20 6.7e-05 0.0046 18.0 2.7 2 23 151 172 150 172 0.97 6 20 5.6e-05 0.0038 18.2 0.8 1 23 178 200 178 200 0.98 7 20 5e-07 3.4e-05 24.7 1.2 2 23 209 230 209 230 0.97 8 20 1.1e-05 0.00074 20.5 0.5 1 23 236 258 236 258 0.97 9 20 1.6e-05 0.0011 19.9 1.5 1 23 264 287 264 287 0.98 10 20 1.9e-05 0.0013 19.7 5.9 2 23 418 439 417 439 0.97 11 20 2.7e-06 0.00018 22.4 0.5 3 23 447 467 446 467 0.97 12 20 2.7e-06 0.00018 22.4 4.0 1 23 473 495 473 495 0.98 13 20 1.4e-05 0.00093 20.1 1.7 1 23 501 523 501 523 0.98 14 20 2.1e-06 0.00014 22.7 0.9 1 23 529 551 529 551 0.97 15 20 1.4e-05 0.00093 20.1 3.3 1 23 557 579 557 579 0.98 16 20 4.3e-06 0.00029 21.7 1.8 1 23 585 607 585 607 0.95 17 20 8.1e-06 0.00055 20.8 4.5 1 23 613 635 613 635 0.98 18 20 0.034 2.3 9.4 0.8 3 23 655 675 653 675 0.95 19 20 0.00018 0.012 16.6 1.5 1 23 681 703 681 703 0.98 20 20 2.1e-05 0.0014 19.6 2.2 1 23 709 731 709 731 0.98
Sequence Information
- Coding Sequence
- ATGTCCACCTCTCGTACTGTAATCTGGCCATGTGGCCAGCCCATTTCCACTTTCGCTTGTGGGCGTGGATGGGCATGCGCCGTGTGCGGCAAGACGTCGTGGTCGCCGGCGCACCTGCGCGTCCACGCCCGCGTCCACACGGACGAGCGCCCGAGCTGCTGCCACGTCTGCGGGAAGCGCTTCCGGACCGACGGGAACTTGGCGCGTCACATGCTCACGCATACCGGGGAGAAGCCGTTCGCGTGCGAGTATTGCAGCAAAAGGTTCACCCAAAAATCGGTACTCATCAAGCACGTGAGAGTCCACACCGGAGAAACCCCATACTCCTGTAACATTTGTCTCAAACGATTCGCCAGAAGTTTCACCCTCGCTTGCCACAGACGGATCCACGGTGATAACATTATAGAAGAGAAACCTGTACGAAATGCCCCAAAAATACCAGAGAACTGGACATGCGAGATATGCAACAGAATCTTTAAGAACAAATCGTATAAACATGCTCACATGCAAACACATAAGCGGGTAGAAAAATTCACATGCGATGCTTGCCGGAAGCAGTTTTCCACGCTTGAGAATTTACAAAAACATGCGATAACCCATTCGGAGAAAGCCGAGAAAGCAAGAACATGCAGTGACTGCGGTAAAGAGTTTAAAACACACGCCAATTTGGTGAGACATATGCTAGTTCATACCGGTGAACGACCGTTTATCTGTGGCTATTGTAATAAGGGTTTCACTCAAAAGAGTGTCTTGGTGAAACATGAAAGGATACATACTGGTGAAACACCGTACTCGTGTGAAATATGCTTAAAGAGATTCTCAAGGAGTTTCACTTTGGAGAATCATTTGAAGAGAGTTCATAAAAAGGGAGAGGTTAACAAAAAGAAAGTTATTGAGTGTGACACGAAGCCATTTTGGTGTGGCAACTGTGACAATTGGTACAGTAACGAACAGTTTTATAAACATGACTGTGTGAAAGTTAAAGAATTGAGCGAAGACAATTATTATGAGTGTGATAATGAAGCTTTAGATTTAAATGAGGAGTTTAACGAAATAGATACTGAAAATCAAGGAGTAGATGACATAGAACTTAATACGGAAGGTAAATTAGTAAATTTAGTAAATGCTGTGGAAGTTACGGTAAAAACTGACCAAGAATTAGAAAAATCGACTGAAAATGATAGTAAAATTATCGAAGAAGTTCATACAGAGGATGTTATAGTAAAACAACcgaagaaaagaaaaagatgGTCGTGCAAACACTGCAAAAAGAAATTCAAAACCAAATCCTACTTCACAGCGCATGTAAAAACACATAGAGGCGAAAAACCAAGCTTCTGTGATGTCTGCAATAAGAACTTCAATTCGAATGGTAATCTTATAAGGCATATGCTGATTCACTCCGGTGAGAAGCCATTCGCCTGTGATCACTGTACCAAAAGATTCACACAGAAAAGTGTGTTAATCAAACATCAAAGAACACACACAGGCGAGACGCCTTATAGCTGTGATATTTGCAACAAGCGCTTTGCGCGCAGCTTCACTTTGCTAAATCACAAAAAAGTCCATAATACCATCAAACCGTACGCTTGCAAATTTTGCGACAAGAGTTTCACGCAACAGAGCGCTCTTAGCATACACGAGAGGAACCATACTGGGGAGCGGCCATTCTCGTGCAAAACATGCAATAAAAACTTCACcagcaatagtacattaacAAGCCATAATAGAATTCATTCCGGGAACAAACCGTTCCTGTGTGATGTATGCAATAGACAGTTTACAACGAGCAGCAACTTCTACAGTCATATGAGAATTCATACCGGGGACAAAAAACATAAATGCGACGTTTGCGAAAAGAAATTCTACACTAACAGCAGTTTGAATAAACATAAGCGGGTACATACGCAAAAGGTGTGCAAAGTGGAAGTGTATGAGGACGACGCGTCGAAACCGTTCGGCTGCCGCGCGTGCCGCCGGCGGTTCGCCAGCGGGTACCTGCTGGGCCGCCACCAACGCACGCACTCCGGCGACAAACCGCACAAGTGCgccgactgtgacagacgATTCGCCCTAATGGGTGACCTGAGCCGCCACCGCCGCTCGCACACCGGCGAGAAGCGGTACTCCTGCGAGGTTTGCTCCAAACAGTTCACCCGGACGACCACCCTGAACAACCATCGGCGAATACACGCCATCTAG
- Protein Sequence
- MSTSRTVIWPCGQPISTFACGRGWACAVCGKTSWSPAHLRVHARVHTDERPSCCHVCGKRFRTDGNLARHMLTHTGEKPFACEYCSKRFTQKSVLIKHVRVHTGETPYSCNICLKRFARSFTLACHRRIHGDNIIEEKPVRNAPKIPENWTCEICNRIFKNKSYKHAHMQTHKRVEKFTCDACRKQFSTLENLQKHAITHSEKAEKARTCSDCGKEFKTHANLVRHMLVHTGERPFICGYCNKGFTQKSVLVKHERIHTGETPYSCEICLKRFSRSFTLENHLKRVHKKGEVNKKKVIECDTKPFWCGNCDNWYSNEQFYKHDCVKVKELSEDNYYECDNEALDLNEEFNEIDTENQGVDDIELNTEGKLVNLVNAVEVTVKTDQELEKSTENDSKIIEEVHTEDVIVKQPKKRKRWSCKHCKKKFKTKSYFTAHVKTHRGEKPSFCDVCNKNFNSNGNLIRHMLIHSGEKPFACDHCTKRFTQKSVLIKHQRTHTGETPYSCDICNKRFARSFTLLNHKKVHNTIKPYACKFCDKSFTQQSALSIHERNHTGERPFSCKTCNKNFTSNSTLTSHNRIHSGNKPFLCDVCNRQFTTSSNFYSHMRIHTGDKKHKCDVCEKKFYTNSSLNKHKRVHTQKVCKVEVYEDDASKPFGCRACRRRFASGYLLGRHQRTHSGDKPHKCADCDRRFALMGDLSRHRRSHTGEKRYSCEVCSKQFTRTTTLNNHRRIHAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -