Acni000183.1
Basic Information
- Insect
- Aethes cnicana
- Gene Symbol
- -
- Assembly
- GCA_963971205.1
- Location
- CAXARK010000060.1:1-3975[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.3e-12 8.9e-09 35.5 0.0 4 39 166 202 163 206 0.89 2 2 0.00011 0.11 12.8 0.3 2 26 218 242 217 242 0.92
Sequence Information
- Coding Sequence
- ATGCCCGGGCGAGGGCCGGCGCGCGTCAAGTGCGAGCCGCCCTCCGAGGACAGCGCCTCGCAGTACTCTCACGGCTTCTTCAACAATCAGGCAAGTTTCCCCAGTATCCTTTCTCAGCTATTGATGTTTAAGGGTTGTGTGCGCTGTGTCCTGATGAGTCTTCCGCAGGGTTCACAGGGGCTGGAGGAGCTGGCGCCGCCGGCGCCGTCGGGCCCGACCGCCACGCCCGTCAGCGTGAAGCAGGAGCCTGGTGAGCCCTCCGTCACCCTGGAGACGCTGGAGCCAGCCCCGCATTCCGACACCCTGGGAGCCACACTGATCGACAGGCACAAGTCGCTGCCCGGAGCGAACGACGCGGATTCCATGGACTTCATGCCGCTCCTCTCTGTTAAGGATGAACCCTTGTCGGAAGGAGAGCAACAACACCTGAGTGGGTCGGACACGAGTGACTCCACGCCGCCTGACACGCGGAGCCCTAAGACCTGGACCCAGCAGGACATGCAGTTAGCGCTCGAGGCGCTGCGGAAGCACAACATGAGCCTTACCAAGGCGTCGGCTACATATGGCATTCCGTCAACAACGCTCTGGCAGCGCGCCCACCGACTTGGCATCGACACTCCGAAAAAGGAGGGCACCTCCAAGTCGTGGAGTGAGGCTGATTTACGCGGAGCCCTGGACGCGCTACGATCGGGGGCTATCTCGGCCAACAAGGCTAGCAAGGCGTACG
- Protein Sequence
- MPGRGPARVKCEPPSEDSASQYSHGFFNNQASFPSILSQLLMFKGCVRCVLMSLPQGSQGLEELAPPAPSGPTATPVSVKQEPGEPSVTLETLEPAPHSDTLGATLIDRHKSLPGANDADSMDFMPLLSVKDEPLSEGEQQHLSGSDTSDSTPPDTRSPKTWTQQDMQLALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGTSKSWSEADLRGALDALRSGAISANKASKAY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -