Ajac008163.1
Basic Information
- Insect
- Aenictocupidus jacobsonorum
- Gene Symbol
- Prdm15
- Assembly
- GCA_010014765.1
- Location
- JAAAKC010000079.1:4152604-4155667[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.054 6.3 7.4 1.3 2 21 249 268 249 271 0.88 2 12 0.002 0.23 11.9 0.3 1 23 361 383 361 383 0.97 3 12 0.0046 0.54 10.8 2.7 1 21 387 407 387 408 0.93 4 12 0.0002 0.024 15.1 2.1 2 23 417 439 416 439 0.97 5 12 0.91 1.1e+02 3.6 0.1 2 21 444 464 443 465 0.90 6 12 9.7e-07 0.00011 22.4 4.1 1 23 481 503 481 503 0.99 7 12 0.0074 0.87 10.1 4.7 1 23 514 536 514 536 0.97 8 12 6.8e-05 0.008 16.6 1.1 1 23 541 563 541 563 0.98 9 12 0.00029 0.033 14.6 2.1 1 23 569 591 569 591 0.96 10 12 2.9e-07 3.4e-05 24.0 0.3 1 23 597 620 597 620 0.96 11 12 0.094 11 6.7 0.5 2 23 623 645 623 645 0.89 12 12 0.00028 0.033 14.6 0.8 1 23 649 672 649 672 0.96
Sequence Information
- Coding Sequence
- ATGTTCAACGGCGTCGAGGAGAAGACGCCGCACGAGACATACCCCATTTGTGGCATCTGTGGCGAGCCGCACGAAGCGTCCGACTGTGATATCGTTAGTTTAAAAGCGACAATAAGCGACACGCCAGTATTATCCAAAGCGCGCCAGTCGCTGCCCGCCGAGCTGCAGCTGGTGGCGATGGCCGACGGCTCGCACTCGGTGATCGCCGTCGAGGGCGTCGCGAAGGGCACGCGCTTCGGGCCGTACGAGGCCAAGGAGCAGTTCTCCATACCGCCCTCGGTGGTGCTGCCGCTGAAAGTGTTCAAGaacggcgacgacgccgacgacaaCGACTACTTCAAGGAGTACTATCTGAACACAACCAATGAGTACGAGTGCAACTGGATGTACTTCGTGAGCCGGGCCAACAGCCTGCAGGAGCAGAACTTGTTGTGTTTTCAGGACGCCGGCCAGATTTACTACATCTCGGTGAAGGATATTGGGCCCAGGGAGCACCTGCGAGTGTGGTACGCACCCTACTATGGCAAGCTCATGAAGATGGGCTCGTTCCTGGAGATGGCTGAGGAGGCAGGCGAGGAGGAGGGCGTGCCCATTGACGAGATCGATTTGAACGCGCTGATGAAGAAGCAGCAGAACCTGCGCGATAGGAACGTGTGGATTTGCAAATTCTGCGGCATTCACGAGGAGGACATACCCACCTTCGCGAAGCACATCAGCGAGCATTACGTGGCGAAGCTGCGGCGGTCGTGCGAGTTCTGCGACGCCAAGTTCCAGACGACGAAGGCTCTAAACAAGCACGTCTTTTTCCAACACAACGACTCGGTGCCCAGCGCGAAGCTGCCCCTTGAGCTGGCGGACAAGCGATCGCTGGCCGCGGAGCACGAGAGCCAGCTGGACCCGCTGCTCAACGACGTCTCCGGCGACAACAACGTCCTGCTGGAGCACCTCAACTTCCAGGACGGCACCAGCATGCCGCCCGCCGACGCCACGCTCCAGCTAAACGTGGACACCATCCTCAATGAGGACGAGAACTTCAACTTCGAGATGCCGAAGGACATCTCCGACAAGGAGGCGGAGAAGTTCGTGTGCGACATCTGCCTGAAGGAGTGCGCCAAGCTGAAGCTGCTCATCGTGCACATGAACGCGCACACCGGCAAGCACACGTGCGGGCAGTGCCTGCGCGTGTTCACGCGCAAGGAGAACTTCGCGTCGCACAAGTGCATCAACAGCACGTCGACGACGGAGAACAAGTGCACGGTGTGCAGCAAGCTGTTCACGCTGAACAAGTACCTCAAGCGGCACATgagccgcgcgcacggccccaacctgcgctgcgccggcgagtgcCGCAAGCTGTTCGGCAGCCAGGAggcgctcgacgcgcacgTGTGCAgcgagacggcggcggcggcggcggtggcggcggcgtcgcagctGGCGTTCACGTGCCACCTCTGCTCGAAGGTGTTCGGCAGCCAGCGTAACCTCACGCGCCATCTCAAGACgcacgagcgcagcgcggcgggcgcgacgccGTCGCACATCTGCGAGATCTGCTGCAAGCAGTTCACCAACATGAAGGCGCTGAAGCAGCACCTCAACACGCACAAGGAGCCGGAGTTCGTGTGCATGGTGTGCGAGAAGACCTTCCAGCGGCGGCAGAACTTTCTGGAACACATGGAGTCGCACAAGAACGATACGCCGCACGTCTGCGGCGCGTGCAACACGAAGTTCACGCAGAAGAAGCTGCTCACGCAGCACCTGCTCATGCACACGGACGAGCAGACGTACGCGTGCGACGAGTGCCCGCGACGCTTCCGGCAGAAGTCCAATCTCGTGAAGCACATCGCTAGCAGCCACGTGCGCGAGTGCCGCGAGTGCGGGCTCACCTTCGGCACGTCGGCGGactgccgcgcgcacgccaacgcGACGCACTCCGACCGCTACGAGTGCCCGGTGTGCAAGATACGCGTCAAGCTGCGCAGCTCGCTCAAGCGGCACGTCAAGCAGAAGCACACGCCCGACGAGTACGACGTGGCGCGCTTCGAGGAGTACGTCAACGAGGTGGACAAGAAGTTCAAGGAGGCCGCGAGCGCCAACGCcccggccgccagcgccgccgccgccgctaccaccgccgacgacgccgaggaGCACGAGCTgccggcgaagaagaagatgaagagcaagaagaagaTGGTCGAGGTGATCTCCGACGTGCTGGTGGCTGGCTCCACCGCCGGCGGTGTCGCCGCGCCGGGcacgagcagcgccgccggccacgCGGTGCAACTGCAAGTACAAAGCGACGCGAAGCTGCCGGAGGGCGGCAGCCAGGAGGAGGCGGAGATGCTCAACCTGCTGCAGGTGAACAGCGCCGAGGTGATGCGGGACATGGCGAGCAGCCTGCAGCTGGACGAGATCGTGAACgtgctgggcggcggcggcggcggtggcggcggcggcgacgcccgcgccgcggtgggcgccgcggcgaagccGCCCGAGGAGCAGGCGCTGAGCGCGCTCAGCTACGGCAGCATCGCGATGGAGTTCGAGAACACCTTCGTCGGCAAGGCGAGCGAGCTGAGCATGACGCACACCTTCGACGGCGAGTCCGTGTGCCTGTCGATGCCGGAGCTGAACGAGCACGGGCAGCCGGTGACGATAGGTACGTTCACGCCATGTGGCGACACGATTCCCTCGTCGTTCATCCTGGAGAACGCCTCGATGAACGGGCCCGTCGAGCAGGTCGTCCTGTACATTTTAGACCAGAAGCCGAGTTAG
- Protein Sequence
- MFNGVEEKTPHETYPICGICGEPHEASDCDIVSLKATISDTPVLSKARQSLPAELQLVAMADGSHSVIAVEGVAKGTRFGPYEAKEQFSIPPSVVLPLKVFKNGDDADDNDYFKEYYLNTTNEYECNWMYFVSRANSLQEQNLLCFQDAGQIYYISVKDIGPREHLRVWYAPYYGKLMKMGSFLEMAEEAGEEEGVPIDEIDLNALMKKQQNLRDRNVWICKFCGIHEEDIPTFAKHISEHYVAKLRRSCEFCDAKFQTTKALNKHVFFQHNDSVPSAKLPLELADKRSLAAEHESQLDPLLNDVSGDNNVLLEHLNFQDGTSMPPADATLQLNVDTILNEDENFNFEMPKDISDKEAEKFVCDICLKECAKLKLLIVHMNAHTGKHTCGQCLRVFTRKENFASHKCINSTSTTENKCTVCSKLFTLNKYLKRHMSRAHGPNLRCAGECRKLFGSQEALDAHVCSETAAAAAVAAASQLAFTCHLCSKVFGSQRNLTRHLKTHERSAAGATPSHICEICCKQFTNMKALKQHLNTHKEPEFVCMVCEKTFQRRQNFLEHMESHKNDTPHVCGACNTKFTQKKLLTQHLLMHTDEQTYACDECPRRFRQKSNLVKHIASSHVRECRECGLTFGTSADCRAHANATHSDRYECPVCKIRVKLRSSLKRHVKQKHTPDEYDVARFEEYVNEVDKKFKEAASANAPAASAAAAATTADDAEEHELPAKKKMKSKKKMVEVISDVLVAGSTAGGVAAPGTSSAAGHAVQLQVQSDAKLPEGGSQEEAEMLNLLQVNSAEVMRDMASSLQLDEIVNVLGGGGGGGGGGDARAAVGAAAKPPEEQALSALSYGSIAMEFENTFVGKASELSMTHTFDGESVCLSMPELNEHGQPVTIGTFTPCGDTIPSSFILENASMNGPVEQVVLYILDQKPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -