Ajac010571.1
Basic Information
- Insect
- Aenictocupidus jacobsonorum
- Gene Symbol
- salm
- Assembly
- GCA_010014765.1
- Location
- JAAAKC010000776.1:11207523-11213312[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.7e-06 0.00032 20.9 0.9 1 23 377 399 377 399 0.98 2 10 5.4e-06 0.00064 20.0 2.1 1 23 405 427 405 427 0.98 3 10 0.034 4 8.1 3.8 2 23 735 756 734 756 0.98 4 10 3.3e-08 3.9e-06 27.0 0.6 1 23 762 784 762 784 0.97 5 10 3.3e-05 0.0039 17.5 2.6 1 23 794 816 794 816 0.98 6 10 0.042 5 7.8 4.5 2 23 1075 1096 1074 1096 0.97 7 10 0.022 2.6 8.7 0.7 1 14 1102 1115 1102 1116 0.92 8 10 7.5 8.8e+02 0.7 0.2 14 23 1179 1188 1176 1188 0.89 9 10 7.6e-07 8.9e-05 22.7 4.0 3 23 1294 1314 1292 1314 0.96 10 10 1.1e-07 1.3e-05 25.4 0.9 1 23 1320 1342 1320 1342 0.98
Sequence Information
- Coding Sequence
- ATGGTTCGAGTAAAACGCACTCCTTTTGTCCTTGCAGGcgagggcgccgcgcagccCACCGAGGAGGCGGTCTCGCCGCGTCtcgccgccgaggaggagctgcagtacgccggcgcgctgatgTGCGCGCGATGCCAGGAGCAGTTCACGGAGGTGGGCGAGTTCCTCACGCATAAGGACGAGTGCGCCGAAAAGGCGAAGAAGCACGGCGACCCGGCCCACTCGGACCCCGAGGATATGGTCGTctccgaggaggaggacgaaggggaggaggagggggacgaggcgggcggcggcggcaagcggcTGGAGCGCATGCGGCGGCATCGGCAGGACGCGGCCAACAACAACAGCGTCGAGGAGGGCGCGCCGGAGGAGACCGAGGGCGAGGCGGACGCGGAGGCCAAGCCGAGCGTCGGTTTCCCGTTTGCGGTGCACGCGCCCGGCGGGCACGTCACGCTGGAGGCGCTGCAGAACACCAAGGTCGCGGTGGCGCAGTTCGCCGCCACGGCGATGGCGAACCAGGAGAACAACGAGGCCGCCCTCCAGGAGCTGGCGGTGCTGCAGAGCACGCTGTTCACGCTGCAGCATCAGCAggtgctgcagctgcagctcaTCAatcagctgcagcagcagttgTCGATTAACAAGCCGGGCAGTCCCGCCTCCACGACGCACGAGAACGAGGAGCATCCGGcggagtcgccgccgccgccgcccagcccgccgcccagcctgcggccgcagcgcgcggcgacgcctgCGATGAACATtgtcctgccgccgccaccagtaAGTCAACCGCTGGGCACCACGCaaccgccgccgggcggcgccgACATTCGCCCGCAGGTGTCGACGCCGATCACGATGCCACCCAATATTCAACCGCCGCTCTGCTCCATATCCTCGTCGCTGGCCTCCACCATCATCACGCACACCAGCGACCCGCCGTCCCTGGACGAGCCCAACACGCTGGAGATGCTTCAGAAGCGCGCCCAGGAGGTGCTGGACAATGCCAGCCAGGGCCTCCTCGCGACGAACCTCGCCGACGAGTTGGCCTTCAGAAAGAGCAAGGGAGCGATGTCCCCGTACGACGCCAAGGGTCGCAACGAGCCGTTCTTCAAACACCGCTGCAGGTACTGCGGCAAGGTGTTTGGGTCCGACTCGGCGCTGCAGATACATATCCGctcgcacaccggcgagcgcCCCTTCAAGTGCAACGTCTGTGGCAGCCGCTTCACCACCAAGGGCAACCTCAAGGTGCACTTCCAGCGGCACAGCGCCAAATTCCCGCATATCAAAATGAACCCGAACCCTGTGCCCGAGCACTTGGACAAGTACCATCCGCCGTTGTTGGCGCAGCTCGGTCAGCAGCCCTCGTTGTCCCCTGGAGGGCCGACCCATCCTCCACATATGGGACCTCAggggccgccgccaccgcccgaGATGATGAACAGTCGCCTGCCTCACTCTCCGATCCGATCGCAGGATCCGCCGCCGAGGCTGTTCCCCCCACATCCGTTTCTCTCCAAGCGGGAGGAACAGGACGTGCCAGAGAACCTCAGCAAACCGCTGCGGTCCTCGACGCCCACCGAGAGGAGTGGCAGCGAACCGCGCGTGAAAGCTGAGAAGTTGGACAACGAGGAGGAACGTGAACCGAAACCCCCCGCGATGTGTGACGATGTCAAGGGACAGGAGCTGCGGATAACGCCCAAGCACGAGGTGGACATGGAGAATGAACCTGAACAGGAGCCGGAGCGGTTTCCCTCGCCGGCGCCCTACGACGAGTGCAGCATCGACAGCAAATACAGCAACGACGAAATGTTGGACCAAGCCGCAAGTCCTGGCGCTGAACCATCGGAGCATATCCAAGATGAGCCCGAGAATTTGTCGAGCAAAAGCAACTCGATCACTCTGCCGCTGAGCATTTCCACTGGGCAACGACTGCCGGCGAACTTCCCCTATGGCCAGACCTTGTCTTCGCCACCAAGCAGCACCTCATCGGGCAGCTTGGGGCCCTTCCCGACCACCCCACTCGGCGACCCATCCAAAGATCCAGCTATCTACGCCAATCTACTGCCCAGGCCGGGTAGCAACGATAACTCGTGGGAGTCGCTGATTGAAGTGACCAAGACCTCGGAGACCAGCAAGCTGCAGCAGCTGGTGGACAATATCGAACACAAGCTCTCCGATCCCAACCAATGCGTCATCTGCCACCGAGTGTTGTCCTGCAAGAGCGCCCTCCAAATGCACTACCGGACCCACACTGGCGAACGCCCCTTCCGGTGCAAAATCTGCGGACGGGCCTTCACCACCAAGGGCAACCTGAAGACCCACATGGGTGTGCATCGCGCCAAACCGCCGATGCGCGTGCTGCACCAGTGTCCGGTGTGCCACAAGAAGTTCACCAACGCGCTGGTGCTCCAACAGCATATTCGCCTGCACACCGGCGAGCCCACTGACCTCACCCCGGAGCAGATCCAGGCGGCCGAGGTGAAGGACTTCCCCTCGCCGGGCGGCTTCCCGCCGCTGCCCAATTCCATGCATCCATTCCTCAGTCAAGGTTTCCAAGTGCCTGGCCTATCTCCGCTTGGGCCCGGCGGCTTTCCCCTCAAGGGCGAGTTCAAGGGCGAGTACatggacgacgacgacgacgacgacgacgacatgCTCAGCAGCTCCGAGCACAACCTCTCGTTCTCGCACTCGCCGAGCGACCCACACCAATCCAGCGCCAACATGGGCGCGCTGAGCTTCTCCAACGAGGACCttcggcggcggtcggcgtcgccggcgcagaaCGGCGAgaagtcgccggcgcgctccggaGTTACCTCGCCGGGCAGCTGCCACGAGCAGCGCTGCTCGACGCCCAACAACCCGCCCACCGTCCAAGTGCCGCGCCCGCCGTCATCCCAGCAGCCGGGCAGTCCCACGCCGTCCGAATCCAACTCGCTGGGGGCGCTCGACCTCACGCCCAGGACGGGCATGCAGCAgcacccgccgccgcagccgacgTCGGCCGCCACCAGTCCCGGCCCCGGAGGCattccgccgccaccatcgctgTTCACGTCCTTTGGGTTCCTGCCACCCGCACAGGGCAACTCTCCATTGATCTCATCGGCATTGTCCTCGCTGACGTCTTCAGTGCTCACCTCGACGGCATTCAGTCCACTGCGGCTTGCCGTTGGGCCGACTGCAGGTCGTGGCAACACCACGTGCAATCTGTGCTTCAAGACGTTCGCCTGCCACTCGGCGCTCGAGATTCACTACCGCAGCCACACCAAGGAGCGCCCGTTCAAGTGCACTGTCTGTGACCGCGGATTCTCCACCAAGGCGGATGCCGACGAGTGCGCGTGTGGCGGTCAGAGGCGTATCCAGGATGAAGCGGAGCCGGCCGCCGGCACGAAGAGCGCCGGCAAGCGCAAGGCGTCGACGAAACTTCGACGGGGCAGTAGTACCGCCGCGAAATTTCGCCTGCCGATGAGCCCTGGATACGCCACTGCGCTGCACTGGAGCTCGCTAGCGGGCAACATGAAGCAGCACATGCTCACGCACAAGATCCGCGACATGCCGCAGCACATGTTCGACAAGcccaacagcaacaacagcgccgacgacgcccAGTCGCAGCCGCAGTCCTCGCCGCAGCAGCCGGCCCagcaagcgccgccgccgccgcaggcgcagcagccgccgcgcgagctgccgccgcaggCGGAGAGCGACCATCCggccgcgcagccggcgccgcagccgcagcccgCCGAGCAACAAGTGAAGgagccaccgccgccgtctaAGCGCGCCCCCTCCGAGACCGAACTGCCGCTCCCCAAGCGGCCGCCGAGCTTGCAGGCCAGTAAGCATTTGTGCCACGTGTGTAATAAGAACTTCTCGTCCAGTTCGGCCTTGCAGATACACATGCGTACACATACTGGGGACAAGCCATTCCGCTGCACCGTCTGTCAGAAGGCCTTCACCACCAAGGGAAATCTGAAGGTACACATGGGCACGCACATGTGGAGCAACggagcgtcgcgccgcggccgccgcatgTCGCTCGACCTGCCGCCCATTCCCATGACGCCCAAGGATTCCGAATTTCTGCAGCGGAGGCCCGATCTCTTCTACCCGTACCTCCCGGCACCATTCCTTAATGGCATGCAGCAGAAGTTGAACGATATTGCGGTCAGTCAAGCACCGCCAAACGGCCTCTCCAGCGTGGGCAAGTACAGCGGCCTGCTCGGCTTCGGCTAcccgccgccggacgcgctgcgctccgccgccggcacccCGGAGCGGCCGCCCTcgcggccggcgagccgcgAGCCCGAGCGCCTCTGGGACATCCACTTCGAACGCAAGCCGTCCGCGGACGGCGCCCGCGAGGAGCTgatgccgccgtcgcgcgaGGGCCTCGCCGCTTAA
- Protein Sequence
- MVRVKRTPFVLAGEGAAQPTEEAVSPRLAAEEELQYAGALMCARCQEQFTEVGEFLTHKDECAEKAKKHGDPAHSDPEDMVVSEEEDEGEEEGDEAGGGGKRLERMRRHRQDAANNNSVEEGAPEETEGEADAEAKPSVGFPFAVHAPGGHVTLEALQNTKVAVAQFAATAMANQENNEAALQELAVLQSTLFTLQHQQVLQLQLINQLQQQLSINKPGSPASTTHENEEHPAESPPPPPSPPPSLRPQRAATPAMNIVLPPPPVSQPLGTTQPPPGGADIRPQVSTPITMPPNIQPPLCSISSSLASTIITHTSDPPSLDEPNTLEMLQKRAQEVLDNASQGLLATNLADELAFRKSKGAMSPYDAKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHSAKFPHIKMNPNPVPEHLDKYHPPLLAQLGQQPSLSPGGPTHPPHMGPQGPPPPPEMMNSRLPHSPIRSQDPPPRLFPPHPFLSKREEQDVPENLSKPLRSSTPTERSGSEPRVKAEKLDNEEEREPKPPAMCDDVKGQELRITPKHEVDMENEPEQEPERFPSPAPYDECSIDSKYSNDEMLDQAASPGAEPSEHIQDEPENLSSKSNSITLPLSISTGQRLPANFPYGQTLSSPPSSTSSGSLGPFPTTPLGDPSKDPAIYANLLPRPGSNDNSWESLIEVTKTSETSKLQQLVDNIEHKLSDPNQCVICHRVLSCKSALQMHYRTHTGERPFRCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLTPEQIQAAEVKDFPSPGGFPPLPNSMHPFLSQGFQVPGLSPLGPGGFPLKGEFKGEYMDDDDDDDDDMLSSSEHNLSFSHSPSDPHQSSANMGALSFSNEDLRRRSASPAQNGEKSPARSGVTSPGSCHEQRCSTPNNPPTVQVPRPPSSQQPGSPTPSESNSLGALDLTPRTGMQQHPPPQPTSAATSPGPGGIPPPPSLFTSFGFLPPAQGNSPLISSALSSLTSSVLTSTAFSPLRLAVGPTAGRGNTTCNLCFKTFACHSALEIHYRSHTKERPFKCTVCDRGFSTKADADECACGGQRRIQDEAEPAAGTKSAGKRKASTKLRRGSSTAAKFRLPMSPGYATALHWSSLAGNMKQHMLTHKIRDMPQHMFDKPNSNNSADDAQSQPQSSPQQPAQQAPPPPQAQQPPRELPPQAESDHPAAQPAPQPQPAEQQVKEPPPPSKRAPSETELPLPKRPPSLQASKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWSNGASRRGRRMSLDLPPIPMTPKDSEFLQRRPDLFYPYLPAPFLNGMQQKLNDIAVSQAPPNGLSSVGKYSGLLGFGYPPPDALRSAAGTPERPPSRPASREPERLWDIHFERKPSADGAREELMPPSREGLAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00629986;
- 90% Identity
- -
- 80% Identity
- -