Ajac000149.1
Basic Information
- Insect
- Aenictocupidus jacobsonorum
- Gene Symbol
- Sall1
- Assembly
- GCA_010014765.1
- Location
- JAAAKC010001809.1:4233-5642[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.3 7.4e+02 0.9 0.8 3 22 89 108 88 110 0.80 2 13 0.012 1.4 9.5 0.0 1 23 118 140 118 140 0.96 3 13 0.0003 0.035 14.5 1.4 2 23 143 164 142 164 0.96 4 13 0.0058 0.68 10.5 5.1 1 23 170 192 170 192 0.98 5 13 1.1e-06 0.00012 22.3 1.8 2 23 199 221 198 221 0.96 6 13 0.067 7.8 7.1 0.3 1 23 231 253 231 253 0.95 7 13 5.3e-05 0.0062 16.9 4.6 2 23 259 281 258 281 0.96 8 13 0.53 63 4.3 0.1 2 23 297 317 296 317 0.93 9 13 1.1e-05 0.0013 19.0 1.3 1 20 323 342 323 345 0.92 10 13 5.1e-05 0.006 16.9 0.2 1 23 353 375 353 375 0.99 11 13 0.00018 0.022 15.2 3.7 1 23 381 403 381 403 0.98 12 13 3.7e-07 4.3e-05 23.7 4.0 1 23 409 431 409 431 0.98 13 13 0.00017 0.02 15.3 7.5 1 23 437 459 437 460 0.96
Sequence Information
- Coding Sequence
- ctGGTGATCAAGCCGAAGCAGGCCAAGCAGGAGTCGCCACTGAAGACTGAGAAGATCGAGCCGTCCTTCGACCAGATCTTCAGCAACATTATGAAGGTGGAGGACGAGCGCCTGCTGGCCTGCGaggcgccggcggccgacCCGCTCGGCATCAGCTCGCTGGAGCGCAAGGAGCTCGCCGAGCTGGCGGCGCAGTCGCtgggcgcggcgacggcggaggcggcgggggcggcggcgccgcagccgccgccgccgcccgtcatCTGCGTGCTCTGCTGCACGATCGTGCGCGACAGCCGCACGCTGCGCCAGCACCAGGTCGACATgcacgcgttcgccgccgACGTCAAGTACAAGTGCGCCGTGTGCCAGGCGGGCTTCGCCAACGAGCCCGCCTACACCGAGCACCTCGGCGTGCACCCGCTCGAGTGCCTCTTCTGCGGCAAGTACTTCCACCGCGCGCCCAACATGCAGCTGCACATCAAGCGCCACATGGGCATCCGGCCGTTCCGCTGCGCCACCTGCGGCAAGCACTTCCTCACGCGCCAGAAGCTGCAGGAGCACCAGCACGTGCACACCGGCGAGGCGCCCATCAAGTGCAGCATGTGCGACGAGACCTTCAAGCGCTACTCCAACCTCATCCAGCAccgcaaccgccgccacctgAACCTCAAGCGCAAGCAGAAGGACTTCatctgcgcggcgtgcggcgacgtCTTCCACTCGAAGAAGAAGCTCGCGTGGCACAAGGAGGTGCACGAGGACCGGCCCAAGTCGTGCCTGCACTGCAGCGAGAAGTTCGTGCACCAGTCGAGCCTCACGCggcacgtgcgccgcgcgcacaacgaGCGCTTCGTGCCGACCGtcgagcgcgtcgccgagaACGTCGAGTGCCCCATCTGCAAGGGCGTCTACCTGCGCGGCTCGCTCGACACGCACGTCAAGAGCCACGCCGACAAGAAGGGCTTCTCCTGCAGCGTCTGCGACAAGGAGTTCACCACCAAGTGGAACCTCAAGCTGCACAAGTGGACGcacgcggggcgcgcgcagaagCCCTTCAAGTGCGAGCTGTGCAAGGGCGCGTTCGTGCGCGAGGCCGACTACACGGCGCACATGAACTCGCACCGCGCCATCCGCCCGTACACGTGCAACTACTGCGGCGCGCAGTTCATCCGCAAGTACAACTGCCAGCGGCACGTCAAGGAGCACGAGCGCCTCAAGACGTACAACTGCACCGTGTGCGGCAAGAAGTTCCACCGCTCCTACTATCTCAAGGACCACATGCGCATCCACAGCGGCGTGCGCCCGTTCTCGTGCCACATCTGCGGCAAGACCAGCACGACGAAGAGCAACCACAACAAGCACGTGCGCATCCACCATGCGCGCGAGCCGGTGAGCACGGAGAACTAG
- Protein Sequence
- LVIKPKQAKQESPLKTEKIEPSFDQIFSNIMKVEDERLLACEAPAADPLGISSLERKELAELAAQSLGAATAEAAGAAAPQPPPPPVICVLCCTIVRDSRTLRQHQVDMHAFAADVKYKCAVCQAGFANEPAYTEHLGVHPLECLFCGKYFHRAPNMQLHIKRHMGIRPFRCATCGKHFLTRQKLQEHQHVHTGEAPIKCSMCDETFKRYSNLIQHRNRRHLNLKRKQKDFICAACGDVFHSKKKLAWHKEVHEDRPKSCLHCSEKFVHQSSLTRHVRRAHNERFVPTVERVAENVECPICKGVYLRGSLDTHVKSHADKKGFSCSVCDKEFTTKWNLKLHKWTHAGRAQKPFKCELCKGAFVREADYTAHMNSHRAIRPYTCNYCGAQFIRKYNCQRHVKEHERLKTYNCTVCGKKFHRSYYLKDHMRIHSGVRPFSCHICGKTSTTKSNHNKHVRIHHAREPVSTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -