Ajac007975.1
Basic Information
- Insect
- Aenictocupidus jacobsonorum
- Gene Symbol
- su(Hw)
- Assembly
- GCA_010014765.1
- Location
- JAAAKC010000079.1:2966344-2968852[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.6e-05 0.0018 18.6 0.1 3 20 153 170 152 171 0.95 2 12 0.019 2.3 8.8 0.3 6 23 172 189 171 189 0.97 3 12 0.0003 0.035 14.5 1.7 1 21 195 215 195 216 0.94 4 12 8.9e-08 1e-05 25.6 1.0 1 23 227 249 227 249 0.98 5 12 2.2e-05 0.0026 18.1 0.1 1 23 259 281 259 281 0.98 6 12 2.8e-06 0.00032 20.9 0.5 1 23 287 309 287 309 0.98 7 12 1.2e-05 0.0014 18.9 1.6 1 23 315 337 315 337 0.99 8 12 1.8e-06 0.00021 21.5 2.4 1 23 343 365 343 365 0.95 9 12 7.2e-06 0.00084 19.6 2.6 1 23 371 394 371 394 0.96 10 12 0.0001 0.012 16.0 0.5 2 23 401 422 400 422 0.94 11 12 2e-06 0.00024 21.4 0.8 1 23 428 450 428 450 0.98 12 12 3.5e-06 0.00041 20.6 2.4 2 23 457 479 456 479 0.94
Sequence Information
- Coding Sequence
- ATGGAAGGGGAGAACATTCAGATCATCAGCAAGTTGGAGCCTATTGAGTGTGAGGATGCTGAAGAAGTTGAGGCTGAGTATGTTCAAGAGATTCACGTGGAGACCAACACTGATGGCAACTTACAAATAAATGCTTACCAAGATGATGGAGATATACCTGATCCAGGTGAGTATGTGACTGAAGATGGCACCCAGAAAATCATCATCACAGAAGGTGGTCAGGCATACATCAGTGAAGATGGTGAAACCAGTACAATCTATGTGGAAGAGGCTGGAAACTACAAAACTGAGTATGAAATTGTCGATGAAAGTGTGGAGACAGAGGAGGAATATGAAGACCATCAGGAATTTGTTACGGAAATCATTGAAGGCACTGAGGAGAGCCAGGAAGTGTATGCTGGTGACAGTGATGAGCCACAATTTATCATGGAGGAAGAAAGAATTGAGGAGAATATTTGTACAATTTGTGAGAGGTCATTCAAGACTGCTGCTAGTTTGAAGAGGCATATATCATGCCTGCGTTCCTTTAGCAGCAAGCAAGCGATCCGCAATCACATGCAGTCGCATCCTCTCGCCAAACCCTTCTCGTGCAAAGCATGCAATCGTGACTTCACGCGAAAGTACCACCTCGATCGGCACGTGATGCAGACCGGCTGCGATGGTACGCCTCGCAATCAGTTCCAGTGCCAGGTGTGCAACAAGAGCTTCGGCCGCAAGGACAATCTGCGCGACcatctgcgcgcgcatgccggccagattaagaagaagaagacgttCCCGTGCACGGCTTGCGGCAAGGAGTTTCAGGGCCAGGCGCTGTTGGTGGTGCACATGCGAACGCATACCGGTGAAAAACCCTACGCCTGCGACTTGTGTCCGAAGCGATTTCCCTCTAGCGGAGCATACAAGAAGCATCGGAGGATGCACACGGGGGAGAAGCCTTACCAATGCATGCAGTGTAAGCGAAGATTCGCGGCAAAGGAGACTCTCAACCGgcacgtgcgcacgcacactgGCGTAAAACCACACAGCTGCTCCTACTGCGGCAAATCCTTCATCCAGGCGGCGCAGCTCCGAGCGCATATCTTCCACCATACCGGCGAGAACGCCTTCACTTGTCCGCATTGCAATCGCGCATTCAACCGCCGCGTGCGTCTTACCACGCATATTCGGTTCGTGCACGAAGGCGCACAACCCTTGGAGTGCGATCAATGCGAGCGCACCTTCTTCAGGAAGGAGGATTTGCTGCGACACGAACTTCTGCACTCTGGCGAGAAGCCCTTCGAGTGCGACACGTGCAAGAAGCGCTTCGCGGTGAAGGCCTCGCTCAAGCTGCACATGCTCACGCATCGCAAGGAGCAACCGTGCGCCTGCGACGAGTGCGGCCGTGCCTTCATCCGCCAAGACTGCCTCCTGCGGCACATGCGCGCCAAGCATCGCGACGTCCTCGAGGACAtcatggccgccgccgagaagAAACGCCTCCAGGAGCAGCTGCTTGCGCCATCCAACATCAAGAAGGAGATCCTCGAATCGCAGATTTGGACTGAGCTCACCCTGACGGATTCGATCAAAGAGCTGCTCAGTTTGCTCGTGGACGAGAAGACGCTCACGGCCTTCGGCTGGCCAGACGCGCCCGTGGATAAGATTCTAGACTCCGTCATTAGGCGGTGCGGGCACGAACCCGCCTCGGACGCCGAATTCGACTACATCAGTCGAATGCGCGAGAACGCCAAGTTGTTGTTCACTGTCGTCATCGACGATCAGGCTGTGAAGTCGCTGCTGAACAATCAGACGGTGGATGAAGTGATTCAGCACGTTCTGCGCTTGGCGAAGAGCGAcaacgaggaggaggacgatgAGCATGAGGGCGAACCGCAAGAGGCAGACTCGGACGACGATAGTATGGAGGTGGAGCAGGACGCTGACGAGGAGCTCGAAGAGGAGGTGATCATTGGGGACACGATCGAGACGAAGATTGAGCAGGTGGAGTACGAGACTGTAGAGTACGTGGATGACGAAGCAATGATAGATGAGACGAACGCTGCAGTTGAATCAATTGACTAG
- Protein Sequence
- MEGENIQIISKLEPIECEDAEEVEAEYVQEIHVETNTDGNLQINAYQDDGDIPDPGEYVTEDGTQKIIITEGGQAYISEDGETSTIYVEEAGNYKTEYEIVDESVETEEEYEDHQEFVTEIIEGTEESQEVYAGDSDEPQFIMEEERIEENICTICERSFKTAASLKRHISCLRSFSSKQAIRNHMQSHPLAKPFSCKACNRDFTRKYHLDRHVMQTGCDGTPRNQFQCQVCNKSFGRKDNLRDHLRAHAGQIKKKKTFPCTACGKEFQGQALLVVHMRTHTGEKPYACDLCPKRFPSSGAYKKHRRMHTGEKPYQCMQCKRRFAAKETLNRHVRTHTGVKPHSCSYCGKSFIQAAQLRAHIFHHTGENAFTCPHCNRAFNRRVRLTTHIRFVHEGAQPLECDQCERTFFRKEDLLRHELLHSGEKPFECDTCKKRFAVKASLKLHMLTHRKEQPCACDECGRAFIRQDCLLRHMRAKHRDVLEDIMAAAEKKRLQEQLLAPSNIKKEILESQIWTELTLTDSIKELLSLLVDEKTLTAFGWPDAPVDKILDSVIRRCGHEPASDAEFDYISRMRENAKLLFTVVIDDQAVKSLLNNQTVDEVIQHVLRLAKSDNEEEDDEHEGEPQEADSDDDSMEVEQDADEELEEEVIIGDTIETKIEQVEYETVEYVDDEAMIDETNAAVESID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00629942;
- 90% Identity
- -
- 80% Identity
- -