Ajac000063.1
Basic Information
- Insect
- Aenictocupidus jacobsonorum
- Gene Symbol
- -
- Assembly
- GCA_010014765.1
- Location
- JAAAKC010000066.1:22965-25705[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00026 0.03 14.7 0.3 1 23 119 142 119 142 0.95 2 15 1.1e-05 0.0012 19.1 7.1 1 23 161 184 161 184 0.97 3 15 5e-05 0.0059 17.0 0.2 1 23 232 254 232 254 0.98 4 15 0.00076 0.089 13.3 4.5 1 23 260 283 260 283 0.94 5 15 4.3e-05 0.005 17.2 2.8 2 23 301 323 300 323 0.96 6 15 0.00027 0.032 14.6 2.4 1 23 367 389 367 389 0.97 7 15 0.0082 0.96 10.0 0.9 1 23 395 417 395 417 0.97 8 15 0.018 2.1 8.9 2.8 1 23 422 444 422 444 0.96 9 15 0.034 4 8.1 0.0 2 23 454 475 453 475 0.96 10 15 8.6e-08 1e-05 25.7 1.5 1 23 482 504 482 504 0.98 11 15 1.1e-05 0.0013 19.0 1.6 3 23 516 536 514 536 0.92 12 15 9.5e-05 0.011 16.1 5.7 1 23 542 564 542 564 0.99 13 15 4.6e-06 0.00054 20.2 1.8 1 23 570 592 570 592 0.96 14 15 9.6e-08 1.1e-05 25.5 0.2 1 23 598 620 598 620 0.98 15 15 4.3e-05 0.005 17.2 0.1 1 23 626 650 626 650 0.92
Sequence Information
- Coding Sequence
- atggaaaaaatctGTAGGTCATGTCTCAAAGTGGACAAGCAAATGAAGAACATTTTTGAGGACGCCGGGGGGCGGCTGGTGTGGATGATAAAAGCATGCACATCTATCAAAGTTATCCCTAGCGACGGTTTGCCTGACTCGCTGTGCTCGGAATGCGAAGAGAAACTCAATGCCGCTTTCGAATTCCGCGAGTTCTTCAAGAACAACGACCAGGCTCTGCGGGCGCATCTCAACGTGACGGTAAAGGAGGACCAGGACGATGAAACCCAATCGATGGAAGATGTTGATGACATGATGGTGGATCAGGGGCATGAGACTGAGGCAAATGAGTCTGATGTGGATGAGAAACTAAAGTACAAATGTGATAAGTGCCCAAAATCATTTGGTGCACCCAGGGCCCTCAGCGCACACAAGACTAAAATGCATGAAGCTGAGGACCCAGACTTTGATCCTGAAATGGTGATTCAAAAGAACAAAAGCTATAAGTGCTCACACTGTGACATGAAGTTCTCCAGGCAGCATATGTTGTTCAAGCATCAAAGGGAGATGCATTTGGAGGTCTCCTTGCATGAAAACAGCACAATTAAGATGGAGGTGCAGgatgatgaggatgatgatgatgaagatgatgatgaggagTTTGAAGAGGATGACTTGGAAGAGGATGAGGAGGGTATCAAGGCTGACAAGGAGTTCCCATGTGAGTTTTGTGGCAAAGTGCTGACAACAGCATTGGGCTTGAAGATACACAGGAGGAAACACACTGGCAAGAATCTGTATGAGTGCAGTGCATGTGATAAAAGTTTTGCAAAGTGTAAACATTTGAAGAATCATTTCAAGGCTGCACATGGACCAGGGACAGCTAATCAGGATAGTAAGAATGGAAATAAGAGAGAAATGCAGTGTGAATTCTGTGATAGAAAGTTTAAGTACAAGAAAAGCTTCAAACAGCACATGTCAATAGAACATAGCATTGATGTGGACGAACAAGACCTCATTGTGGAGCCGATTGTCAAGCGTAGAAGAAGAACTGTTAACGATAAAGACGAATCAAATTCCGATAGCGATTCGAGTGATGGCAGGAAACCCCCTGGCGCACACAAATGCGCCGTCTGCAGCGCGGAGTTTCCGCGTTCCACTCACCTGTCGCGCCACATGACACTGCATCGCGACGTAATGACGCACAAGTGTGACAAGTGCGAGGACGCCTTCATGACCGACGAGGAGCTGCAGAAGCATCTCGCGCGGCATGCTGACAAGCCGTATCATTGCTTCGCGTGCGCGAAGGAGTTCTCGCGCGGTGAGCACTACATTCGTCACATCAAGGCGCACGATGCGCCCGAGGAGGGCAAGCCGTTGCAATGCCCCATATGTCCAGAGCAGCGGAGCGATGTCGACGGGCTGGCGGAGCACGCCAAGGTGCACTTGGCCAGCGACAAGCGCCACGTGTGTAACACGTGCGGCAAGGCTTTCAATCGCGCCGACAATCTGCGCACGCACGTCAAGACGCACAAAGGAGAGCCGCAAGTGcccaaattgcatttgtgcattTACTGCGGGAAAGAGTTTAATAATTCCAGCAATATGATCGTGCACATGCGGCGACACACGGGCGAGCGTCCATACAAGTGCAAGCAATGCGGGAAAGGTTTTCCGCGCTCCCATGATCTCAAGTGCCACGAACGCACCCACTCCGGCGAAAAGCCTTATTTGTGCACCCTGTGCGGGAAGTCGTTCAATAAGAGCAATAAATTGTTGCGGCACACGCGGGTCCACACCGGCGAACGGCCGTACGCATGCTCGATATGCGGGCGCGCCTTCACGCAATCCAACGATCTGGCCCTCCATATGCGCCGCCACACCGGCGCTCGCCCGTACGCGTGCGGCGTCTGCCCCGCGCGCTTCATTCAGTCCGGGCAGCTGAAGGCGCACCAGCGCTCCAAGGGCCACTGGGTGGAGACGGCGCCCGACTTAAAGGGCAGCTATCGCGTGGAGCCCGTCATCAGCACCGGCGAGTCCAAGCCCATCCGCTTCCGGCGCACCGCGTCCGGTCACAAGTACGAGCCGCCCGACTTCAGCGAtaaaccgccgccgctgctgcaggATCGGACGCAATCGCAACAAAGTCAGGAGCCGCCCATTGAGAAGGAACTGGTGATACCACCAGTGGTAACGGCGGCTGACAGCGCCCACTTGGGGCAAGTGCAGAATGCAAATCCCACGCAAACTGTGCACATGGAGTACGGccatgcgccgcacgcgcaagTCTACTCGGAGTACGGCAAGGTGAGCACGGAGACGTTGGTCGTCGTGCCCGTGCACGGCCACACGCCGACGCCCACGAACGCCACATTCCAGGAGGAGGGCATCGCGGCCGGGTGCGGCGAGAGCAGCAACGCCTTCTCGCCCGCCGACACTTCGTACGACTGCAGAAGCTACAGTTAG
- Protein Sequence
- MEKICRSCLKVDKQMKNIFEDAGGRLVWMIKACTSIKVIPSDGLPDSLCSECEEKLNAAFEFREFFKNNDQALRAHLNVTVKEDQDDETQSMEDVDDMMVDQGHETEANESDVDEKLKYKCDKCPKSFGAPRALSAHKTKMHEAEDPDFDPEMVIQKNKSYKCSHCDMKFSRQHMLFKHQREMHLEVSLHENSTIKMEVQDDEDDDDEDDDEEFEEDDLEEDEEGIKADKEFPCEFCGKVLTTALGLKIHRRKHTGKNLYECSACDKSFAKCKHLKNHFKAAHGPGTANQDSKNGNKREMQCEFCDRKFKYKKSFKQHMSIEHSIDVDEQDLIVEPIVKRRRRTVNDKDESNSDSDSSDGRKPPGAHKCAVCSAEFPRSTHLSRHMTLHRDVMTHKCDKCEDAFMTDEELQKHLARHADKPYHCFACAKEFSRGEHYIRHIKAHDAPEEGKPLQCPICPEQRSDVDGLAEHAKVHLASDKRHVCNTCGKAFNRADNLRTHVKTHKGEPQVPKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCKQCGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHTRVHTGERPYACSICGRAFTQSNDLALHMRRHTGARPYACGVCPARFIQSGQLKAHQRSKGHWVETAPDLKGSYRVEPVISTGESKPIRFRRTASGHKYEPPDFSDKPPPLLQDRTQSQQSQEPPIEKELVIPPVVTAADSAHLGQVQNANPTQTVHMEYGHAPHAQVYSEYGKVSTETLVVVPVHGHTPTPTNATFQEEGIAAGCGESSNAFSPADTSYDCRSYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -