Basic Information

Gene Symbol
Trerf1
Assembly
GCA_010014765.1
Location
JAAAKC010000261.1:7183-15551[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 6.6 8.3e+03 -3.0 0.2 5 19 459 473 459 475 0.91
2 2 3.8e-11 4.7e-08 33.0 0.1 2 46 1139 1183 1138 1183 0.97

Sequence Information

Coding Sequence
ATGCGGAGTGATGGAAGCGATGCGGTCACGGCGACATTCGATCTGTTCGACTCGTCCAGTGGACCAGACCTCACCCTGTCGCCGCAAACTTTCACCAATTCCGCCGAGGCTTTCATCAACGATAATTCCAACAGCCTAGGCGTGCCAGCTGACAGTGATCCAATGCTGTCGCCGTCCTTTGTATGCGCAAAGATTTTCGGCAACGCCTCAGCGCTGGCGAAACACAAACTGACGCATAGCGATGAAAGAAAGTACGTGTGCTCAATGTGTGGAAAAGCATTTAAACGGCAGGACCATCTCAATGGTCACATGCTGACGCATCGTAACAAAAAACCATACGAATGCAAGGCGGAGGGTTGCGGAAAATCGTACTGCGATGCGCGATCTCTGCGCCGGCATACTGAGAACCATCACAGCACATCGACCACCTCAGCGAACGCGTCGTCGACGACCATGTCGCCCGCGCAAGGtgcagccgccggcgatgccgCCTCTCCCCATGGCTCCAGCTGTATTCAGTatgcaccgccgccgacgaataCGCCCGTACCTGGGAAGAGCCAATTGCAACAACTGCTGGCGACTGAACCGTCAAAGAGCGGTGGCAGCGGCAATAATGACGGATTAACAAAACAGCAATTGGATCTGATTCATCAAATCATGGAGCAGACGCAAAGGCAGTCGCTGACCGCCGTAAAATCAACAGCAAAGCAGCCGACAAAACCGGTTAGCAAAACAGCAATTAAGGTCCAACGTATTTGGTCGACGAACAAAGCATCCGGCACCAACACACCCTCCACAACTACAGTAAGCGCGACTTCGACGGCGAGTACCTCTTCAACCATCTTGTCCCAAGCAAATACCAAACCCGAGCCGAAACCAGTCGAATGCAATTTGTGCCAtagaaaattcaaaaatatccCGGCCCTCAACGGGCACATGCGATTGCACGGCGGGTACTTCAAGAAGGATACGGATAACAAGAAGAGCGAAAAAAAAGACACGACGGGACCACCATTGCAAACGGCGAGCGTAAGCGTTCGTGCCCTCATCGAGGAGAAGATTATTAATAAACGCATAACTAGCGCTCCCACCACGTCAACCGCTGCCGCCCCATCGACCACGGTtgctgtcgccgccgctgccgttgcTAGCGTGCAGCCGGGTGACGATGCGATGCGCAATACGACGGCCCCGCCTTTGTTTCCCTTAACCGTGCATTCCACAGCGACGAGCACAACCGATGTGAGCTCGAAAACCACCTCGTTCGTCgtgccagcgccaccacagCAACTAGCCGGTGAAAAATCGCGCCGACACTCCGACGCCGACGCGTTcacaatgccgcgcgcgccaagcggcGCCAGCACCACCACGCAACAGGAAGCGGACGCATTAGCCGATTTGATACTGAAGCATGAGAAGGCCACCGTGAAACGCGCGGTGTCTGACCCTGGCCAACACCCGGCGCACGCCTCCCCACAGCATGCGGACAGTAAGCAGGAGCCACAGATAATCCAATTCCAAGCAGCCACCGACTCGTTCACACTCGCTTATCCGACCGAGGATGGTTATCTCTCGCCTAGCCTACAGGACGAGGTCTTCACCCAGGTCCCCGATAGTATGCTGCTGCAAGGCGTCGATGCACATCAATTGGCATCGATTCAATTTCAAGCCGACTCGTTGCTGCAGGATCAAAGCGACCAGCAGTTGCTGGATGATTACACAAATCTTCAAGACACCGCGATTCAGTCGCCTTCGTATCAATCCAACCACTCGGTTAATCAGGAGCTGCAGGCGGTGCTCGACTCACCGCTGCCGGAGAGCCTCGCCGAATTCAGCACTTATCATTCAAGCGGGAATCTCGACATGCCGTCTCCAGGCTACCACACCCAATCGCCGGTGCAGTACTCCTCGCAGTCGCCGCACGTGACGCTGGCGACTCGCTCACCCCTGCAATCGCCGTTGATTAGACACGACTCACCTGGCTTTGCTTATccgacgccgccggcaagcCATGAAGGTCTCTCGCCCTGTTTCGGGCAGAATTCCATGCTACCGCTGGTTTCGCCCAAGCAGAACGACTTCAGCCAAGTGGTGTCTCACGACATAGATGATCCTCAGCAGCCATCTTCGCCCCTTACTGCAGCGTTCTTCACCTCCAACCTGTCAAGTGCAGCCGCCGTCGAGGAAGCCCTCGAGGAGGTCCTGCCCGGCGAAAATATCTCTGCCGATGAACTGTACCCATCCCTCACAAACTCACCACCTCCTCCAACGTCCCATTCACCACTTTCTGTAGGCCTCACGCCTATCGCATCACCAGCACCCGCAAATGTTACCTCCGCATCAACTGCATCAACACACACAACTTTTACTCAAAACACGGTCTCTTTTCCGATGACAAACCATTTCACGTTGCAATCACAGATGATGCCAAACTCCGATGATCCTCTGCTCTCTAGCAGTCCCAAAGATTTTGTCCCGCGCAAGAAGTTCGAATTCAATGGCCTTCCCCTCAAAGTTATCAGCAACGGCCTGATTGATCTGAACAATACGAACCTCACGGGTATCTTAGTGGAAAGCAATGGAgagataaaatttattcaaactGGTGGTCCCAACTATCAAGCCAAGAATATCCTCGTTGCCAGTGCACCGCTCATCGGCACCACAGCATCAGCACATAATCAGAAGGAATCAAGTGAAATGGGTTCTAAATTAGCGGGTGCAAAGCCGAGCTTAATTCAGAAAATATCCAAAGTCAAAACGATGACTGTGAAGTCCACGGAGATTAAGCTGGAGGACATATCGCATGACGTGTTCCTCAGTCCGACAACCATGGCTGCAAATCCCGTTCGGTTGTCGCGGAAACGGCCGCGCACTGATCCCCTGCAATTGCCCGTGCTGCATCAATCCCGGCTGCGAGCGACCCGCAGCAAACCTCAGGGCGCTGCACCTTACACCCCACAGCCCATTCTTAATCCGAGCAGGCCCGGTTCCGGgttgtatatatatttaaaacaaaagaCAAATGATCATGATGAAGTAGCGAGCACATGGTGCAATGAATCGGTACCTGAATCAGACTCGACGCCCCACATCAACGTCGGGCACCAGTTCCAATGCAGCATCCCTGCGGTAATGCCGTCCTACCATCGAGTCACGCAGGGCAGAACGCCCGAAGATCTGCTCTGGGATCCCGGTATACTGCAGTGTAGTGACAGTGAAGTGGACATGTATTTGGACTTTGCGTGCTGCGCGGCTGTTCCCGGAGGCGGACGGAATCAGGAATACGCCATGCATTTGCTTCACATGTGTGGTGGTAACATACACGAGGCAATGTTGAAACTGATGCAACCGACGCCGAACCTACCAAATGGCCATCCACTGCTCTCCTATCAGTATGCCGAGACGGACAAGTGGACTCCTGAAGAGGCGGAACTTTTCCATCAAGCTTTGCTCAAACACGATAAGGACTTTTATTTTATCGCCCAGGAGGttcgttcaaaatcgttgaaaCAATGCGTTCAATTCTACTACATGTGGAAAAAGGTCTGCACCGATGAGTACCGAAAGCACAAGGAGCACCACGAACGCAATCTGGGCGCCAGAAGTTCCGAAAGTAGTGAGGAAAAGCCGCACCTAGACGCAAAGCTGCTTGGGATAGCCGACGCCGGCTCGCCGATGCCAATGCAGGAGCACCGGAATTACATATGCGAGTTTCCCGATTGTTCAGCCGGCTTTAATTCTAGAGCGGCGCTGAACGGCCACATTCGGATACATGGCGGTACGGTGCGCAGCTCACCCACGCCACCGGCTCATAATCACGGGCACGTTCAGCCGGAACTGATGGCCGTAGCGTCAAGcaatgccggcggcggcggcggcgcaactgGCTTGCAGCAATTACTTACCAAGCGGTCGATGCAGTCGTGCCATGCGCCCGACTCTACCGAAAACTATCCGTGTAAGATATGTGGGAAGGTTTTCACCAAAATAAAAAGTCGTAGCGCGCACATGAAATCCCATCGGCCACCGGATGCAGAACCCACGCGCCCGAAGCAAAAAGATAAAGAACATATTCTTACATTAATAACCACCGCGACTACGGGTGCTgtttccgccgccgcgacaCAATCAACATTCGACTCCGTGCCAACTTCATCCAGTATTTAG
Protein Sequence
MRSDGSDAVTATFDLFDSSSGPDLTLSPQTFTNSAEAFINDNSNSLGVPADSDPMLSPSFVCAKIFGNASALAKHKLTHSDERKYVCSMCGKAFKRQDHLNGHMLTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHSTSTTSANASSTTMSPAQGAAAGDAASPHGSSCIQYAPPPTNTPVPGKSQLQQLLATEPSKSGGSGNNDGLTKQQLDLIHQIMEQTQRQSLTAVKSTAKQPTKPVSKTAIKVQRIWSTNKASGTNTPSTTTVSATSTASTSSTILSQANTKPEPKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDTDNKKSEKKDTTGPPLQTASVSVRALIEEKIINKRITSAPTTSTAAAPSTTVAVAAAAVASVQPGDDAMRNTTAPPLFPLTVHSTATSTTDVSSKTTSFVVPAPPQQLAGEKSRRHSDADAFTMPRAPSGASTTTQQEADALADLILKHEKATVKRAVSDPGQHPAHASPQHADSKQEPQIIQFQAATDSFTLAYPTEDGYLSPSLQDEVFTQVPDSMLLQGVDAHQLASIQFQADSLLQDQSDQQLLDDYTNLQDTAIQSPSYQSNHSVNQELQAVLDSPLPESLAEFSTYHSSGNLDMPSPGYHTQSPVQYSSQSPHVTLATRSPLQSPLIRHDSPGFAYPTPPASHEGLSPCFGQNSMLPLVSPKQNDFSQVVSHDIDDPQQPSSPLTAAFFTSNLSSAAAVEEALEEVLPGENISADELYPSLTNSPPPPTSHSPLSVGLTPIASPAPANVTSASTASTHTTFTQNTVSFPMTNHFTLQSQMMPNSDDPLLSSSPKDFVPRKKFEFNGLPLKVISNGLIDLNNTNLTGILVESNGEIKFIQTGGPNYQAKNILVASAPLIGTTASAHNQKESSEMGSKLAGAKPSLIQKISKVKTMTVKSTEIKLEDISHDVFLSPTTMAANPVRLSRKRPRTDPLQLPVLHQSRLRATRSKPQGAAPYTPQPILNPSRPGSGLYIYLKQKTNDHDEVASTWCNESVPESDSTPHINVGHQFQCSIPAVMPSYHRVTQGRTPEDLLWDPGILQCSDSEVDMYLDFACCAAVPGGGRNQEYAMHLLHMCGGNIHEAMLKLMQPTPNLPNGHPLLSYQYAETDKWTPEEAELFHQALLKHDKDFYFIAQEVRSKSLKQCVQFYYMWKKVCTDEYRKHKEHHERNLGARSSESSEEKPHLDAKLLGIADAGSPMPMQEHRNYICEFPDCSAGFNSRAALNGHIRIHGGTVRSSPTPPAHNHGHVQPELMAVASSNAGGGGGATGLQQLLTKRSMQSCHAPDSTENYPCKICGKVFTKIKSRSAHMKSHRPPDAEPTRPKQKDKEHILTLITTATTGAVSAAATQSTFDSVPTSSSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00022363;
90% Identity
iTF_00022363;
80% Identity
iTF_00022363;