Basic Information

Gene Symbol
JARID2_1
Assembly
GCA_010014765.1
Location
JAAAKC010000776.1:6086895-6093458[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.5 3.7e+03 -1.7 0.2 15 61 227 272 220 285 0.69
2 2 2.2e-21 5.5e-18 65.1 0.0 8 89 1418 1497 1413 1497 0.93

Sequence Information

Coding Sequence
ATGGTCTTCAACCGAAAACGCAAAGATAATAGATCGTCCAGTTTCATACTGGACGATAGCCCTAAGAGGAGTAAAGTTCAGGCACAGAGAAAATTTGCTCAAACTTCCAATATGAACTCTCCTGTGTTAACACCCGTTGCAGAGATTGAAATCCAGGAGAAAGTAATGCCAGAACCCATTGAGTTGGTGCCCATGAAGCGACCAAATACAGAAGATTTTCTGACATTTCTGTGCTTTCGTGGAACACCAGCATTGCCACCCAATTTGGGATTCTTCAACAATGCCAGTATGATGGAAGGCCCACCACCAATTTCAACATCACCAGGCTCAAGTAAAAATGGGGTTCTTTTGCCTGCAAACATTAGTAAAGCACAGGGTGATAAACCATTTATTGCATTTGGAGTGAGGAAGAGAGCTGATCCAGTGGTAGTATCCAGACATATGGATAAGAAGCGTCGACATGCGCTGGCACTACAAGCGCTGAGGAGGAAGTATCAGGAGCAGAAAATGGCCAAGATCAGAGCTATCACAATCAGCAAACTCTCAGAGAAGGTGCACACTAATAAAACAGTAGTGCGGACAACGAGAAGTATCGCAAAGGCAGAGCCAGTGGCGAAGAAAACCGTCGCGCAGAAAACCAAAATCACTGTGGTCGCCACCAAGCACGTTAAAGTGACAACGAGAAGGACGAGCATTCAGCAAACGCCGACTACCACGAATCTTAAGCAGAAGATGACGCTAAGAAATCTCAGAAACCGAGTGGTgaagcgcgaaattcaaaagATTAATAAATCTAAGGAAAATATCAATGAGAAACTGAAAAGTAAGACTGTGAAAGATGCGCCTAACCAAAATGACGAAGAAGATGAGGGTAATTATGTTGAAACTGCTGAGGAGGATGAAGAACAAGATGAGGAAGGGGCTGAAGAAgaggaggatgaggaggaaCAGGATGATGAGTACTCTTCAGAGGTATCTGAGGAATCTGAAGAGGTTGTTACACCCAAGAAGAAGTTAATGCCAGTGAGGACTAGCAATTTGCGAGTGACGCGATCAAATATTGTACAGAAAAAACGCATTTTACTGAGGCAGAAGAACTTGAAAAGATCTCCCACCTCACCCAGGTTAAGATCACAACTGAGGAGGAAAATCTTGCAGGCAAAAACCGATTTGAAAGTACCCTTGAAGgcaaaaagaagaattttAACTAGGAAAGTTCAAATTAaggcaaattgtaaaagtaaATTGATTACTAAAAAGGTTCCAATGAATACGCGATCCGAGAAGAGTGATAAGTCTGATAAACCTGAGAAAGCGGTCAATGACGGGCAAAAAAGTAAGACTCGGGAAAATCTTCCGAAGCGGCAGGTTAATTTAAAATCTCCTAAGAGAGAAGTAAGATCAAAGAAGGCAAGATTACAAGATGGGAAAACTCACGAGAAAGTCAAAAGTGTAGAAAATAAGTTTAAAATGCTGTGTGAGGATAAGACCAAGAAGAAAATCGAGTCTAATAAGTCAACAGAACCGAAGACGAAAAAAGCAGTTGATCTAAAAGTGAAAAAGGAGAAATTGACTGATGATAAGGTGAAAGCAAAAATTGAAGATAAAACTATAGATGggaaagaaacaaaaacggaGAAGACAGTTCTGGATGCTAAAGATAGCAAGAAAAATTCTCCTATTGAAAGAATCAAAATTACTGAAGGAGGATataaaaaaatggaaaagaaaaCCAAAGACAACAAGAatggtgatgatgataaaACGAAAGAATTATCACCTACGAAGAAGACCGTTGGTAAAGACAATGTAAAACGGAAAGTGGAAAATGACATATCAAAGGGTAAAAATTTAGAGAAAACAGAAAAGTGTATTGATAGAGATGATAAATGTGATAAATCCGAGAAAAACGAAATGGTAGAGAAGATATCCAGTCCAAAAACAGCTAAAAAGGCGGAGAAGAAAACTGAAAAGATAGAGAAGGTTGAGAAATTTGACAAAACAGAAAGATCTGACAGATTAACAAAGTCTAAAGTTTGCGAAGTTGAAAAGAAGGAGGTATCCGCCATTCGTGAGAGACCAGCACGTAAAACTAAGCTAGCTGCAGCCATTTACATGGAAATCCTGGGCAGGAAGTTGGTCAATGACGATGACGTTGACGATATGTCCATCGATAGTTTTCCTGAACTGCCCAACGTTCGCAAGATGGAGCAAAGGGAAAACGAACTTAAAGCCAAGATGAGAACAGCATCGAAGAAGAACTCAGTCGATAAATCTGACAAGCAAGCAAAACATGCAAAGGCCGATAAGTTTGACAAGAAGCGGAAAGATATTGAGTCTGAAACGGATAATTCCTCCGTTGCACAAGTACCGCAAACCATTAAATCAGCTCTAACTAACGCTGGTGAAAAAAATGCGTCGGCAAAGCGCAGATCTAGAGTAAATTCCACTCTACAGGACTCTGAATTCAATAATTTGCCTTTGGGAAGGAGTACCAAAGTCAATAACGCTTTTAGTGATTCGGATTCAgagaaattgattttaaagACATTGAAAAAGCAGAAGAGTGATGTTACTAATGAAGTGGAGACGCCCAGGAAAACAGTCACAAAGAAAACGGCCAAGAAATTGGATGACACGTTCAGTTTTAGTGAGTCTGATGATGAACCCTTGGTGAATTTAACACAAAAAATATCTGAGAACGACAAGCCCAAGAGTGAGACGGAGGGtacaatgaaacaaaaaagggAGTGTGCCAAACGGCCGCAGAATTATTTACCCTTGTTTTCGTCATCTGACGAGGAGGACAAATTCTTCCGTCAGAGTGAACGACCACCAAGTAAGAAGAAATCAGTAAAGACTGAAGCTCCAGCAGAGGCTTTACTTTCTTCAAAAGATATTGGCAAAAGATTTGGTAAGGGCAAAGTAAACATGTCCAACGAACAAATCGAGAAGTGGTTGAACGACAGTGCAATGGCTGGAGTTATGGTGATAAAGGCCGAGAACGATGAGATGTTAAAATTTGGGGAGCGGATACCGACGGAGACCTCCCTGGACAACAATTTAAGTACAGTAAATATGGAACATCTGAAGAATTCCTTGcttaaagaagaaaaagtcaAAATAGATCCAGTTTATGTCTCCCCCGTGCACACCACACCTGAGAAGTCTACGACCAGCTCTCAAAAACCTTTTTCTAGTGAAAAGAAAACTATCTTCCGAAAAGCGGAGCAGATTTCCAAAAATTCAAACGCATTTTCCGCTTGTAATGAAAGTAGTGTATATGCATTCGAGGCAGACAACGAAGATTCCGTCAGCACACCATTCAGGAGACCATCGCGAAGACCCAGCAGCACCGCCACTAGTAGATCGGAAGATGAACCCATTAATCGGATAACACTGAACTTGGGAATGGATATGGAGCAGAAAGGTAAATTCCGTTTGCCTGCTACCATCGGTACCTCCGCAAATATGGTAGCAACCACTTGTGCAACGAGTACACCGTTGAGCAAGAGCAAAGAAATCTCGCTGATGTTGACGGACGAATCTAACACGAGCGGGCCGCTAGCAGTGCAAGTGAATCTTGAATCATCCGAGAACGAACCAACAAGTCAAGGCGATAACGAACACATGTTTTATCTACCTTTTCAACCCGGCACCAAGAATAGTGCTGCAGGTGGCCTACAGGGTACACCTAGCCATCAGAAGTTCATGATGGGCGCGAGATTAGTCAGGCAAAACTCGTGCGGCAGCATAGATCGAATCGCCAACTCGCAGATGCCGATGTTTCCCCCCTCTAGCCCGAATACATTTAAGAAGTTGGAAAAATCAAAGCCGATGGCATGCTGTAGCATGAGCGAGACGTCCGACTCCGGggattttaaatataaaattcccAGTTCACCCAGCGCCAGCTCATCGTCATCAGCGAAGCTCGTGAATAAACGCATGAAGCAGAACAATGAAGAGTTGTACAAGCCAGTTAACTCGAGCAAGTTTCCGAATTTGCTAAATACGGCGAAGGTGGTGGATGCACCAGTCTTTCACCCCACTGAGAAGGAGTTTGTCGATCCTTTAGAATATATTGAGAAGATCAGAGAGCAGGCAGAACGTTTTGGTGTGTGTCGAATTGTTCCGCCGGGAAATTTCAAACCAGAATGCAAGGTGTTGGATGAAATGCGCTTCACGGCATATAATCAGTACGTACACAAGATGATGCATCGATGGGGTCCTAATTTTAGAGAACTTGTGGCCATTCGCAAATATCTATCAACTCAGAGCATTAGTCTAAAGCCTCCACCATGGATTGGTGGTATTGAAGTTGATCTGCCAAAGCTGTACCAAACTGTGCAGAGTCTTGGTGGATTGAAGGAAGTTAttgagaagaagaaatggcCGAGAGTGTCGGAGCTAATGAAAATCCCAAAGTCAGCCCAGGATAGAGTTACTAAGCTTGATGACATGTATTGTAAATATCTCTTGCCCTATGATACGCTTTCCCCAGCTGAGAGGGAAAAATTGTTTGCGGAAGCTGAAGCGGACTGGGTTAAACGTGAGGAGAAAATGCTTGAAAAGGCCAGGAATGGCGCCGACATCCCAGAAGAAGAACCCAaggatgaagatgatgaagacgAAGAGGAATCCGACAGTGAAGCGGATATTGAGTGTATCGTTAAGGGACGCAGCATGGCACTCAGTGCATTTTATCGAATTGCCCGGAATACAATGGCTATGTGGTTTAAGGAAGGCGAACCTACCGCGCAGGAAGTAGAGGAAGAGTTCTGGAAACATGTTAATGAACGCCAGCATCACATTTGCGTCCACTCTGGATCTATAGATTCTGGCAACTTTGGCTACGGCTTTGCTGTATCAAAGAACAGTCCGTTCGCACGGCACGCATGGAATTTAAAGGTTCTTACAAACAACAGCGGATCGATACTAAGATCAATGGGTCCTGTGATGGGCCTAACAGTTCCCACGCTCCACGTAGGTATGCTGTACGCTGGCTGCTGTTGGTATCGAGATCCACATAGTCTCCCGTGGATTGAGTACCTCCATACAGGGGCGAATAAAATTTGGTACGGAATACCGGATTCCATGAGCGACAAGTTCCACGAAACGATGGTCAAACTGGTACCGCACTATTGCCTCAATAAGAGTCTCTGGCTGCCAACGGATACCGTGATGGTGCCACCTAGCACATTGGTTGACCATGGCGTTTCGCTGACGAAGACTCTGCAAGAACCAGGGCAGTTCGTTGTAGTATTTCCGAAAGCATTCACGTCGAATATCTGCGCCGGCTATGTGGTGTCCGAGAGCGTTTTCTGGGCACCGCCGGACTGGCTGAGTGGGGCGGATAAGGTATTTCAAGAGTTGCGGAATAGTTGCGAACCATCGATGTTCTCGTATGAACGATTGTTGTTGAGCATGGCGCAGGATCCACGTAGCGACATAACAGTCTTGAAAAGGATTATTCCGCCGATTGAGAGGATGATCGTGCGGGAGAAGCAAGAACGCGCGAAGATCAAGGAGCTAGGAGTCAAAAAGGCAGAAAGACTACCTTTGCTAGACGCGAAGCGAAAGAAAAAGATGCAAGACACGGACACGGAGTATATATGTGAAGATTGTAGATGGAATTTATACTGTTCAATGATTTGTGATAGCCCTGATAACGGCTTTTATTGCCTCGAACATGCGATAGAGAACATTCAAGAGAAGCGCCTCGAAATCGAAAATCTGAAACTGATGTATACGTACGACGATAACGAACTGGAAACGTTTGTGGCCAAAATACATGAGGTTATTGAAGCGAAACTTATTAAGAAAGTCGGGGGGAAGTTTGCAGGCATGGCCACACTTCTGAACAGATAA
Protein Sequence
MVFNRKRKDNRSSSFILDDSPKRSKVQAQRKFAQTSNMNSPVLTPVAEIEIQEKVMPEPIELVPMKRPNTEDFLTFLCFRGTPALPPNLGFFNNASMMEGPPPISTSPGSSKNGVLLPANISKAQGDKPFIAFGVRKRADPVVVSRHMDKKRRHALALQALRRKYQEQKMAKIRAITISKLSEKVHTNKTVVRTTRSIAKAEPVAKKTVAQKTKITVVATKHVKVTTRRTSIQQTPTTTNLKQKMTLRNLRNRVVKREIQKINKSKENINEKLKSKTVKDAPNQNDEEDEGNYVETAEEDEEQDEEGAEEEEDEEEQDDEYSSEVSEESEEVVTPKKKLMPVRTSNLRVTRSNIVQKKRILLRQKNLKRSPTSPRLRSQLRRKILQAKTDLKVPLKAKRRILTRKVQIKANCKSKLITKKVPMNTRSEKSDKSDKPEKAVNDGQKSKTRENLPKRQVNLKSPKREVRSKKARLQDGKTHEKVKSVENKFKMLCEDKTKKKIESNKSTEPKTKKAVDLKVKKEKLTDDKVKAKIEDKTIDGKETKTEKTVLDAKDSKKNSPIERIKITEGGYKKMEKKTKDNKNGDDDKTKELSPTKKTVGKDNVKRKVENDISKGKNLEKTEKCIDRDDKCDKSEKNEMVEKISSPKTAKKAEKKTEKIEKVEKFDKTERSDRLTKSKVCEVEKKEVSAIRERPARKTKLAAAIYMEILGRKLVNDDDVDDMSIDSFPELPNVRKMEQRENELKAKMRTASKKNSVDKSDKQAKHAKADKFDKKRKDIESETDNSSVAQVPQTIKSALTNAGEKNASAKRRSRVNSTLQDSEFNNLPLGRSTKVNNAFSDSDSEKLILKTLKKQKSDVTNEVETPRKTVTKKTAKKLDDTFSFSESDDEPLVNLTQKISENDKPKSETEGTMKQKRECAKRPQNYLPLFSSSDEEDKFFRQSERPPSKKKSVKTEAPAEALLSSKDIGKRFGKGKVNMSNEQIEKWLNDSAMAGVMVIKAENDEMLKFGERIPTETSLDNNLSTVNMEHLKNSLLKEEKVKIDPVYVSPVHTTPEKSTTSSQKPFSSEKKTIFRKAEQISKNSNAFSACNESSVYAFEADNEDSVSTPFRRPSRRPSSTATSRSEDEPINRITLNLGMDMEQKGKFRLPATIGTSANMVATTCATSTPLSKSKEISLMLTDESNTSGPLAVQVNLESSENEPTSQGDNEHMFYLPFQPGTKNSAAGGLQGTPSHQKFMMGARLVRQNSCGSIDRIANSQMPMFPPSSPNTFKKLEKSKPMACCSMSETSDSGDFKYKIPSSPSASSSSSAKLVNKRMKQNNEELYKPVNSSKFPNLLNTAKVVDAPVFHPTEKEFVDPLEYIEKIREQAERFGVCRIVPPGNFKPECKVLDEMRFTAYNQYVHKMMHRWGPNFRELVAIRKYLSTQSISLKPPPWIGGIEVDLPKLYQTVQSLGGLKEVIEKKKWPRVSELMKIPKSAQDRVTKLDDMYCKYLLPYDTLSPAEREKLFAEAEADWVKREEKMLEKARNGADIPEEEPKDEDDEDEEESDSEADIECIVKGRSMALSAFYRIARNTMAMWFKEGEPTAQEVEEEFWKHVNERQHHICVHSGSIDSGNFGYGFAVSKNSPFARHAWNLKVLTNNSGSILRSMGPVMGLTVPTLHVGMLYAGCCWYRDPHSLPWIEYLHTGANKIWYGIPDSMSDKFHETMVKLVPHYCLNKSLWLPTDTVMVPPSTLVDHGVSLTKTLQEPGQFVVVFPKAFTSNICAGYVVSESVFWAPPDWLSGADKVFQELRNSCEPSMFSYERLLLSMAQDPRSDITVLKRIIPPIERMIVREKQERAKIKELGVKKAERLPLLDAKRKKKMQDTDTEYICEDCRWNLYCSMICDSPDNGFYCLEHAIENIQEKRLEIENLKLMYTYDDNELETFVAKIHEVIEAKLIKKVGGKFAGMATLLNR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-