Ahon011539.1
Basic Information
- Insect
- Adoxophyes honmai
- Gene Symbol
- -
- Assembly
- GCA_005406045.1
- Location
- BHDV01013944.1:229545-247346[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00031 0.017 15.7 3.4 1 23 289 311 289 311 0.99 2 11 0.096 5.4 7.9 2.3 1 23 317 340 317 340 0.94 3 11 0.035 2 9.2 4.5 1 23 371 394 371 394 0.97 4 11 0.013 0.75 10.6 0.4 2 23 403 425 403 425 0.91 5 11 0.25 14 6.6 0.3 2 23 435 456 434 456 0.92 6 11 0.0068 0.39 11.5 0.2 2 23 467 489 466 489 0.89 7 11 2.3e-06 0.00013 22.4 0.6 1 23 494 517 494 517 0.97 8 11 0.00014 0.0082 16.7 3.3 2 23 536 557 535 557 0.96 9 11 0.15 8.5 7.2 0.2 1 19 563 581 563 582 0.87 10 11 6e-05 0.0034 17.9 0.7 2 22 592 612 591 615 0.90 11 11 1e-06 5.7e-05 23.5 2.0 1 23 623 646 623 646 0.97
Sequence Information
- Coding Sequence
- ATGGCTTGTACACAGTTGCCATTGAGTAGTATGAAGGTGGAAGTGGAAAACAATCCGGAAaatttgctagcttgtcgtatTTGTTTAGCAAACGATGTAAAACTGTTTAATATTCACGAGTGCGGCCTCAATCAAGTGTTTGTGGATCTAATAGGCACTGCGCTGTCAGCATGGGACGGCCTCCCGCAACACGTTTGCGGCTGGTGCGCCGCGGGGCTCCGCCGCGGAGCGGGGCTAAGAGCGCGAGCCCTACGCAGTCACCGGCTACTTTCGGAGGCTCTCGTACACCATCAATATATCACAACAAGCTACATCAAAACTATAAACAGAGACGCACATAGACTGACACACAACTTCTCCAGTGAGCGCTGCGACAAGAACTTCTTTACATACAACCATGAGGAGGAACAAACAAAAACTACCCTACCCTACCTTAAGCCTTGGGAAGTATTACTagaaaacaatattgaaatggATGCCAAAGATTTtcacgatgatgatgatgatgataccaaATTCGACGTGACCTTAGATTTGAATTTAGAGAAAGAAGACATTTTGAAAGATCCGGTGTCGCCTTACCCTCCGGAGAATGGAATGGCTGAAAGTATTAACAAAACCATAAAGACAGAGAAAAGTAGTCCGAAGAGGAAAAGAGAAGTTCGAAAGAAAGAGACAAAGCAGACGAAACGGAAGAAGAAAGGGCAAAATGGCGACCATCCTAGGTTAAAACCTTTCTACAATGAAACACACTATAAAGAATTTGAAGagaaatttaagtttaaaatcacTGTTTTGTCCGAAGAAGAGATGTTGAGAGAAATGGAGGCGAGAAAGGAAGCTGACAGTTATAAGAATGCGGCGTTTAAATGTGAATTCTGTTTCAAAGGATTCTATCTGTCAAGCACTTATGAGAATCATATGAAGACACATGATCCGGCGCGCCGGCACGCCTGCGGCCTGTGCCGCTCGCGCTACCACACGCCGGCCAGCCTGCGGCGCCACACGCAGAGCGCGCACCTGCTCAAGTTCACCTGCATGCAGTGCGACGACACCGTGCACGGCAAAGAGAGCGCGGAGCTGCACGCGGCGTACCACACTGGCGCCACTTTCAAGTGCGACCACTGCGACCAACGGTTCCTcAAAAAAACAAGCCGCAGTACTCACATGAGGATATTGCATCCGAGCGAGATAGCAGACGGCGGCACGTGCGAGGAGTGCGGCGAGACCTTCCTGAGCAGCATGGGGCTGCGGCGGCATAAGACCTGGTCACACAAGTCACTGCCCAGCTTGCCTACCCTGAGGTGCAGGACGTGTAAGATCAGGTTTGAATCCCAGGCGGCCATCGACAGGCACCGGGACGCGCATCCCGGCGGGAAGTGCGACGACAAacacagTTCGTGCCCGCGCTGCGGCGAGGTGTGTGCGAGCGAACAGGAATTACAGGCGCATCGGGTCGAACAGCATGGCTTGCAACTCTTCACTTGTGATATGTGCGGCAAAACGTTCGAGTCCAAGGACTCGGTGCAGACGCACATGGACCGCGTGCACTTCCTCATCAAGCCGACCAAGGCGGAAAAGAAGCCGCGCGGCGCGGGGACCTCCGTCTGCGAGCACTGCGGGAAACACTTCCCCTCTCTGGCGCATCTGAGGATCCATGCGAGCAAACATTCGGGCGAGCGGCCGTACAAGTGCACGCTCTGCCCGAAGACGTATTTGACTGTACAGGGGCTCAAGGCGCACGAGCCGTTCCACACGGGCGCGCGCAAGTGGCGCTGCCAGGAGTGCGGCGCCACCTTCGTGCACCAGTCCTCGCTCTACCAACACCGCCGCGCGCAAATCCACAGCGGTGAGAAGGCAAAAGCGTACCAGTGCCACATCTGCGCCAAAACATTTACCCAATCGGGCTCGCTGCAGACGCACATCAAATACGTTCACATGAAGCtcacgccgccgccgcgcgcgcgcggGAAGAAACACACCTAG
- Protein Sequence
- MACTQLPLSSMKVEVENNPENLLACRICLANDVKLFNIHECGLNQVFVDLIGTALSAWDGLPQHVCGWCAAGLRRGAGLRARALRSHRLLSEALVHHQYITTSYIKTINRDAHRLTHNFSSERCDKNFFTYNHEEEQTKTTLPYLKPWEVLLENNIEMDAKDFHDDDDDDTKFDVTLDLNLEKEDILKDPVSPYPPENGMAESINKTIKTEKSSPKRKREVRKKETKQTKRKKKGQNGDHPRLKPFYNETHYKEFEEKFKFKITVLSEEEMLREMEARKEADSYKNAAFKCEFCFKGFYLSSTYENHMKTHDPARRHACGLCRSRYHTPASLRRHTQSAHLLKFTCMQCDDTVHGKESAELHAAYHTGATFKCDHCDQRFLKKTSRSTHMRILHPSEIADGGTCEECGETFLSSMGLRRHKTWSHKSLPSLPTLRCRTCKIRFESQAAIDRHRDAHPGGKCDDKHSSCPRCGEVCASEQELQAHRVEQHGLQLFTCDMCGKTFESKDSVQTHMDRVHFLIKPTKAEKKPRGAGTSVCEHCGKHFPSLAHLRIHASKHSGERPYKCTLCPKTYLTVQGLKAHEPFHTGARKWRCQECGATFVHQSSLYQHRRAQIHSGEKAKAYQCHICAKTFTQSGSLQTHIKYVHMKLTPPPRARGKKHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -