Ahon018330.1
Basic Information
- Insect
- Adoxophyes honmai
- Gene Symbol
- -
- Assembly
- GCA_005406045.1
- Location
- BHDV01029098.1:21382-24311[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00068 0.039 14.6 1.3 1 23 216 239 216 239 0.97 2 10 0.0083 0.47 11.2 1.9 1 23 244 267 244 267 0.95 3 10 4.3e-05 0.0025 18.4 0.5 2 23 271 292 271 292 0.94 4 10 2.3e-05 0.0013 19.2 0.8 1 20 296 315 296 316 0.96 5 10 4.4 2.5e+02 2.6 0.1 2 13 316 327 315 329 0.83 6 10 1.6e-05 0.0009 19.8 5.1 1 23 333 356 333 356 0.97 7 10 0.043 2.5 8.9 5.5 1 23 363 385 363 385 0.96 8 10 4.3e-05 0.0025 18.4 0.2 1 23 391 413 391 413 0.98 9 10 0.013 0.73 10.6 2.6 1 23 419 441 419 442 0.95 10 10 4e-05 0.0023 18.5 0.6 3 23 449 469 447 469 0.97
Sequence Information
- Coding Sequence
- ATGAAGACATTGAGAAATACACTGGCTAATGCATTGCTTAGTAAAGAAAATATTTGCTGTTTGTGTCTTAATGTAGCACAAGAAAATACAATACTCGTCGAAGATGAAGTTGTTTTGAATATGAATGATTTTGAATGCAATATTATATTTTCTGAAGTTCTTTGTTACATCTTGGGTCACGATGTCCGCGACATCGCATTCGAGAATGTTTGCAAGCCATGTGCAGTGTCAGCACTGAATAGCTATACATTTATTATGAAATGTAGGCAAAACTTCCTAAGTTTGAATCAAGCTATTGAAAATATAGATAAATGCCTACAAAATGCTTCAGAAAAAGCACATTTGTGCAAATCAATATTTGTAGCATTAGATACAAATGACAATTCACAAGAGTACTATGATTGTAAACGACCAGCCACAACACAGGCTGTTGCCCTGAAGAGATTTCAATCCATCCTTAATAGGAAAACTACAGaattaaatttagaaattaaaattgaaGAAGAATATGATGGGAACACTGAGGAGCCATTGCCAAAAGATACCAGGGTTACAATAAAAGATAAAGCCAAAGAGAAAAAGACCCGTAGAACCGTAAAATTGCCCCGAGAACTTATATTGCATAAAGACAGCCAGCCACTAGCATACAAATGCAGTGCTTgcctaaaaatatttactactTTGGAGTACCTGAGACAGCACTACTTAAGGCTACATGCTCCGAAAAATTTCAAGTGTTCAAAATGTGAGCGCAGCTATGGATCTTACGCTCTGATGGAGCAACATATCCAAGACTGCCATGACACCAGAGTGTGTTCCATATGCGGCAAAGTGTACAATAACCGCCATGCGTTGAAACAGCATGAACTAGGCCACCGAATGAGGTATGTTTGCCAAAAGTGTGGCCGAGTCTACAAGAACAAGGATACCTTCAAACAGCATATAGAGTGTGGAGTCTGCGGTCAGACCACTAGAAAGTCTGCTACTGACGGACAGTACAAATGCGATATTTGTAATAAACAGTACTCACATAAACACACTTTACAGGTTCATATAAGGTTTGAACACAGCGAATCAGGAACTGCCCATGTGTGCAGCTGGTGCAACAAAAAGTTTAGCTGTCAAAGCCGACTGAAAGCGCATACGGTTAAACATACACAGGAAAAGAACTTCCCCTGTGAGATATGTGGCGGTAAGTTTGTTACGAAAGAGTCTTTGCTGTATCATACACGCATACACACGGGAGAGAGACCATACAAGTGTTCATATTGTGGTCTTAGTTTCCTTTCGTCATCCCGAAGAGCAGAACATGTGCGTAGGCATCACAAGGACAACAATATATTTTGTGATATTTGTGGAGCTAAATTCAGGACACAACCAAGTCTTTTAAGACATAAGCAGAAACATTTGGATCCTAGCAAGCCCCCGAGGGTAGAAAAGGCGAAGCCAGAGATCCAAAAAAATTTTACTGACAATTCAGGCAATCCTGTAAATCCAGACTTCGTAGTTGGGTCTAGTTTTACAGTAATTAGTTAG
- Protein Sequence
- MKTLRNTLANALLSKENICCLCLNVAQENTILVEDEVVLNMNDFECNIIFSEVLCYILGHDVRDIAFENVCKPCAVSALNSYTFIMKCRQNFLSLNQAIENIDKCLQNASEKAHLCKSIFVALDTNDNSQEYYDCKRPATTQAVALKRFQSILNRKTTELNLEIKIEEEYDGNTEEPLPKDTRVTIKDKAKEKKTRRTVKLPRELILHKDSQPLAYKCSACLKIFTTLEYLRQHYLRLHAPKNFKCSKCERSYGSYALMEQHIQDCHDTRVCSICGKVYNNRHALKQHELGHRMRYVCQKCGRVYKNKDTFKQHIECGVCGQTTRKSATDGQYKCDICNKQYSHKHTLQVHIRFEHSESGTAHVCSWCNKKFSCQSRLKAHTVKHTQEKNFPCEICGGKFVTKESLLYHTRIHTGERPYKCSYCGLSFLSSSRRAEHVRRHHKDNNIFCDICGAKFRTQPSLLRHKQKHLDPSKPPRVEKAKPEIQKNFTDNSGNPVNPDFVVGSSFTVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -