Ahon013305.1
Basic Information
- Insect
- Adoxophyes honmai
- Gene Symbol
- -
- Assembly
- GCA_005406045.1
- Location
- BHDV01072319.1:127449-131942[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.075 4.3 8.2 2.9 1 23 66 88 66 88 0.98 2 18 0.12 6.6 7.6 0.6 2 23 116 138 115 138 0.91 3 18 9.4e-05 0.0054 17.3 2.7 1 23 161 183 161 183 0.98 4 18 0.28 16 6.4 0.7 3 23 189 209 188 209 0.96 5 18 1.1e-06 6.4e-05 23.4 0.9 1 23 214 237 214 237 0.97 6 18 1.7 96 3.9 0.7 2 10 247 255 246 260 0.87 7 18 0.029 1.7 9.5 1.2 1 23 299 321 299 321 0.97 8 18 0.1 5.7 7.8 0.4 2 23 349 371 348 371 0.93 9 18 6.7 3.8e+02 2.0 0.3 1 23 431 453 431 453 0.90 10 18 0.0076 0.43 11.3 0.2 2 23 482 504 481 504 0.94 11 18 0.16 9 7.2 4.3 1 21 527 547 527 549 0.95 12 18 0.05 2.8 8.8 0.7 2 23 554 575 553 575 0.96 13 18 0.00022 0.013 16.2 3.3 1 23 580 603 580 603 0.95 14 18 0.016 0.9 10.3 1.8 2 23 613 635 612 635 0.94 15 18 0.027 1.5 9.6 3.1 1 23 641 664 641 664 0.95 16 18 1.3e-05 0.00074 20.0 3.3 1 23 668 690 668 690 0.98 17 18 0.00015 0.0083 16.7 2.4 1 23 696 718 696 718 0.98 18 18 0.014 0.81 10.5 1.7 1 23 724 747 724 747 0.94
Sequence Information
- Coding Sequence
- ATGTTGTGGAGTGTTCAGAGAAACAAGAAGGAGCGGGAAGAACTGAAAACTGACTTTGTATCCTCAGGCCTGGAGTCGGCGGCTCGCCAGGGCGCCATCACCAGTATTTGGGAGATGACGGTGTCGGAGCGACAGAACGCTGCCACCTTCCTCGAACACACCTCCGTCCGCCCTTTCGTCTATTGCCGATACTTTTTCAAATGCTTCTTTTGCCATGAACAGTATCCCGAACTCAATTCGCTATTACGACACACTGACACCCATGATGTACCATCAGGGGAGAAAATACTCAAAGAACTCCTGCCAAAGGGGAAACGAACAGTCAAAGTTGATATTTCAGAACTAAAATGCCGACTTTGCAACGAAAATTTCAATGATTTGGACAAAATTCGAGAGCATTTAACTGAGAAACATGGCAAAGAATTCACGAAGTCTGGAAATGGTTTAGTAGCCTACAATCTAACCGTCAAAGATGGACAATTTTCTTGTCATATATGCAGAAAAATCTTCCAAACGTTTATCCTTCTCAATCGACATATGAATGTCCATTTTAGTAACGCGATATGTGAAACCTGCGGCGTTGGTTTCATGACACATCAGCGCTTATTGCAGCACAAAGAAATACACCTACCTGGCGGGTACCCTTgcgataaatgtaaaaaagtatACACTACTAGTTCGAATCTGAGATATCACATAGAGAAAGCTCACGAGGGCTCAACAAGGATGCGAATGTTGCGTTGCCCGCACTGCCCGGAAAGATTCTTCGAACACTTCCaCGATAGACCAAGTATTAAAACAAGCGTGTGGCAAATGACGCTGCCAGAGAGGAGAAACGCGGCTGCATTCATTCAGTACACTACCGTCCGACCATTCATTTTCATGGGGACGTGTTTCAAATGTTTCTACTGCGCGGAATACTTCTCGAAGCTCGCATCCTTACTGGATCACACGAGCAACCACAAGATTCTCGAAGAAAGCGTTCTTTTAGAAAAATACGTCCATAAAGAAAAACGGGTGATACAGGTTGACATATCGGACTTAAACTGTCGCTTATGCAATCGGAATTTCCCCGACCTACAAACAGTGAAGGAACATTTAACAAGTGACCACGGCAAGGAATTCTTCTTTGCCAGCAATGGAATGACTGAGTATAACATGGAACTGAAAAACGGCGACAATTCTGGCTTAGAGACAAGCATCTGGCAAATGACAGTTCCTGAAAGAAAGAACGCCGCATCCTTCATAATGTTCACCACAGTCCGACCCTTCATTTTCATGGGCTCAAGTTTCAAATGCTTCTACTGCATGGAATACTATTCAGAGCTGCCAGCTTTATTAGAACACACCTCGGCGCATGAAATAACGGAGAACTTCAAGCTTATATTAGAGAAATACGTGCACAAAGGGAAAAGGACGTTGCAAGTTGacatatcaaatttaaaatgcCGTCTATGCGACCAAAGATATCCTAATTTAGACAACGTAAGAGAACATCTGCAGCTAGAACATAAGAAGGAGTTCTGTAAAGCAAGCAATGGCATGACGGAATACAACATGGAATTGAGAAATGACGCTTTTGTCTGCCACATTTGCGGGAGTGATTTCCACTCGTTCCCACTTCTGAACTCACATATGAATTGCCATGTCGGAAAAGTCGTATGCGAGACTTGCGGTGCTGGATTTCTTAACCAACACTTCCTTATGAAACACAAGGAAACGCACTACAACATAAAGTTCAACTGTAAGCATTGTGATTCCGTGTTCACAAAGAAGAGTCAGTTGAAGTACCACACAGAGATTATCCATAAAGGCAAAGCTAGGGTCAAGCCGAAAAAGTGCCCGCAATGCGATGAGACCTTCAAGGAGCATTACAGCAAAATGATTCATTTGAAAGACGTCCACGGAATCACTAAGACCTTCCCCTGTCATTTGTGCAAAGCTACTTTTAACACTCGAAGAGCCATAACTCAACATACGACTAGATTTCATACTGAAAAATTCAAATGTGAAGTTTGTTCAAAGTGCTTTAGCATAGAATCCAAGTTGAAACAGCATATGCGAGGGCATACAGGGGAACGGAACTTCATATGCCCGATTTGCAAGAACGCTTACATGCATAAGATGACGCTGCGCAAGCATATGCGGAGTCACAATTCCGTGTTCAAGTTTGTCTGTTCGGAATGTGGATCAGGGTTTCATAATAAAAACGAATTCGTTAAACATTCGAAACAATGGCATGCTGCGTACAGTGAGATAACGTAA
- Protein Sequence
- MLWSVQRNKKEREELKTDFVSSGLESAARQGAITSIWEMTVSERQNAATFLEHTSVRPFVYCRYFFKCFFCHEQYPELNSLLRHTDTHDVPSGEKILKELLPKGKRTVKVDISELKCRLCNENFNDLDKIREHLTEKHGKEFTKSGNGLVAYNLTVKDGQFSCHICRKIFQTFILLNRHMNVHFSNAICETCGVGFMTHQRLLQHKEIHLPGGYPCDKCKKVYTTSSNLRYHIEKAHEGSTRMRMLRCPHCPERFFEHFHDRPSIKTSVWQMTLPERRNAAAFIQYTTVRPFIFMGTCFKCFYCAEYFSKLASLLDHTSNHKILEESVLLEKYVHKEKRVIQVDISDLNCRLCNRNFPDLQTVKEHLTSDHGKEFFFASNGMTEYNMELKNGDNSGLETSIWQMTVPERKNAASFIMFTTVRPFIFMGSSFKCFYCMEYYSELPALLEHTSAHEITENFKLILEKYVHKGKRTLQVDISNLKCRLCDQRYPNLDNVREHLQLEHKKEFCKASNGMTEYNMELRNDAFVCHICGSDFHSFPLLNSHMNCHVGKVVCETCGAGFLNQHFLMKHKETHYNIKFNCKHCDSVFTKKSQLKYHTEIIHKGKARVKPKKCPQCDETFKEHYSKMIHLKDVHGITKTFPCHLCKATFNTRRAITQHTTRFHTEKFKCEVCSKCFSIESKLKQHMRGHTGERNFICPICKNAYMHKMTLRKHMRSHNSVFKFVCSECGSGFHNKNEFVKHSKQWHAAYSEIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -