Ahon010007.1
Basic Information
- Insect
- Adoxophyes honmai
- Gene Symbol
- -
- Assembly
- GCA_005406045.1
- Location
- BHDV01031886.1:293435-298293[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0029 0.16 12.7 2.3 1 23 93 115 93 115 0.95 2 14 0.0056 0.32 11.7 2.0 1 20 121 140 121 142 0.94 3 14 0.009 0.51 11.1 0.7 1 23 147 169 147 169 0.90 4 14 0.01 0.58 10.9 6.0 1 23 175 197 175 197 0.97 5 14 0.00019 0.011 16.4 0.7 1 23 203 225 203 225 0.96 6 14 0.035 2 9.2 0.5 2 23 232 253 231 253 0.95 7 14 0.0013 0.073 13.7 0.8 1 23 279 301 279 301 0.97 8 14 1.9e-07 1.1e-05 25.8 1.4 1 23 306 328 306 328 0.98 9 14 0.00017 0.0099 16.5 2.1 1 23 334 356 334 356 0.98 10 14 3.4e-05 0.002 18.7 0.3 1 23 362 384 362 384 0.98 11 14 2.6e-06 0.00015 22.2 1.3 1 23 390 412 390 412 0.99 12 14 0.0016 0.091 13.4 1.3 1 23 417 439 417 439 0.97 13 14 5.5e-06 0.00031 21.2 0.2 1 23 445 467 445 467 0.97 14 14 0.0032 0.18 12.5 0.3 1 23 473 496 473 496 0.97
Sequence Information
- Coding Sequence
- ATGCCTTTGGAGGCGTCATTGAAGACATTGAAGAAAGAGGTGGAATGTACTGGAGAGTTCAATGAAGGAGATCGGTGCTCCAAGAGTCCGGTTCAGGCTCCAGAATTAACAGTACAAGTTTTGAAAGAAGAAGCCAACTCACAAGACAACATTAAGGAATGGACTGTGGAAGTGGAAATTGAAAACTCCACCGAACAGTCTCCATCATACGAATGTCCGTTCTCCCCCCAAGCTTGCTTCCTCAAATTAGAAGAAACTTTTGGTGTTTCAAATAAATTTGTCTGCATAATTTGCCAAAAGACATTTGACCACAAGAGAAGACTGCTCATACACATGCAGAACCACATAATAAAGAAGATTTATTCCTGCGACAAATGCACAGAAAAGTTTTATAcggaaaaacaattaaaatatcaCAAACTTAATAATTGTAGACAATTCAGCTGCAGTTACTGTGATGAACAATTTGTTAAGAAAAACCAGTTGATATTCCACATAGGACTCCACATGGGTGACAAAATATTCACGTGCAAGATGTGCCACAAACAGTTTTTAGAGCAGGATTTATTAAACAAGCACATGCACCAGCATGCGGCACACAAACCCTACTCTTGTGAGCTCTGCGGCAAAACGTTCAGATTCAAACAATCTCTACCGGGCCACATGCAACTCCATAAAGTGGAACAACTACTCTCCTGCGATACTTGCAACGCACAGTACCCTACGTTGTTAGAACTGaagaaacacaaacaaaatcatgagGAGAAAACTATACAGTACGCAAAAGACACACTTTCAGAGATTCATAGCAAACCGGATCCTAATGAAAAACCATTCGCCTGTGACATATGCCCTGCTCGCTTCCTGAGAAAAGAATCCCTTCgtaaacacaaaaagaaccacgCGAGAGAACCTTTTAAATGTGAGCTGTGCCCCAAGCAGTTCACACAGCAAGGTTCGCTCACCACCCACATGAGACAACACACAGGCGAAAAACCATATGCCTGCCAGTTCTGTGACAAACAGTTCTCAAAGAAATACGTGCTCGTCACACATACGCGTTCCCACACAGGCGAGAAACCGTATTCCTGCGAGGTGTGCCAAAAGAACTTCACGTACCGAGCGACTTGGATCAACCATATGGAGGTTCACGCGGGCGAGATGAAATACTCTTGTGACATGTGTGACAAGATGTTTGCCACGCAAATCTACTTGTCGAACCACAAACGCACGCACAAGCAAAAGAGTCACGTGTGTATGTACTGCGACCGCCAATTTGCGAAAAGATCCACCTTGATACCTCATCTGCGGTTGCACACGGGTGAGAAACCGTTTGCATGTGAACTGTGTGACAAGAGGTTCGTGGTTAAGCCGAGTCTGGTGCTTCACATGAGGACTCACACGGGTGAGAAGCGGTACACCTGTGATATCTGCGAGGTGCAGTTTAGTAGACTGTCCATCCTGGAGCAGCATAAACAGAAGATACATGTGGATTTGATGCTGGATGATAAGTTTTTGAATGTCGAACTTGATAAAGCGACATAG
- Protein Sequence
- MPLEASLKTLKKEVECTGEFNEGDRCSKSPVQAPELTVQVLKEEANSQDNIKEWTVEVEIENSTEQSPSYECPFSPQACFLKLEETFGVSNKFVCIICQKTFDHKRRLLIHMQNHIIKKIYSCDKCTEKFYTEKQLKYHKLNNCRQFSCSYCDEQFVKKNQLIFHIGLHMGDKIFTCKMCHKQFLEQDLLNKHMHQHAAHKPYSCELCGKTFRFKQSLPGHMQLHKVEQLLSCDTCNAQYPTLLELKKHKQNHEEKTIQYAKDTLSEIHSKPDPNEKPFACDICPARFLRKESLRKHKKNHAREPFKCELCPKQFTQQGSLTTHMRQHTGEKPYACQFCDKQFSKKYVLVTHTRSHTGEKPYSCEVCQKNFTYRATWINHMEVHAGEMKYSCDMCDKMFATQIYLSNHKRTHKQKSHVCMYCDRQFAKRSTLIPHLRLHTGEKPFACELCDKRFVVKPSLVLHMRTHTGEKRYTCDICEVQFSRLSILEQHKQKIHVDLMLDDKFLNVELDKAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -