Ahon019967.1
Basic Information
- Insect
- Adoxophyes honmai
- Gene Symbol
- -
- Assembly
- GCA_005406045.1
- Location
- BHDV01015833.1:158187-161071[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0097 0.55 11.0 3.7 1 20 78 97 78 99 0.93 2 15 0.00038 0.022 15.4 4.5 1 23 141 163 141 163 0.99 3 15 1.8e-05 0.001 19.6 2.7 2 23 170 191 169 191 0.96 4 15 0.045 2.6 8.9 0.1 1 19 197 215 197 219 0.85 5 15 5.2e-05 0.0029 18.1 0.6 1 23 225 247 225 247 0.97 6 15 0.0013 0.076 13.7 4.1 1 23 253 275 253 275 0.97 7 15 0.00024 0.014 16.0 1.7 1 23 281 303 281 303 0.96 8 15 5.5e-06 0.00031 21.2 4.2 1 23 309 331 309 331 0.98 9 15 4.3e-06 0.00024 21.5 3.7 1 23 337 359 337 359 0.98 10 15 8.7e-06 0.0005 20.6 0.3 2 23 375 396 374 396 0.96 11 15 0.00025 0.014 16.0 0.3 1 23 402 424 402 424 0.98 12 15 0.00018 0.01 16.5 3.7 1 23 430 452 430 452 0.95 13 15 0.00011 0.0062 17.1 4.1 3 23 460 481 458 481 0.96 14 15 0.0016 0.093 13.4 1.7 1 23 486 509 486 509 0.92 15 15 3.1e-06 0.00018 22.0 1.4 2 23 516 537 516 537 0.97
Sequence Information
- Coding Sequence
- ATGGAGGTGAAAGTAGAATGTGTAGCCGTGAAAGAGGAGCCCCCGTGGGAAGAGGCGGGCTCGCGGGCGGGCCTGTACAGCGGCCACGAACTCAAGGATGAAGTGGCGGTGGGGCCCGAGGTATTTCAGCCCCAGAAGGTGCCCTACTTGGTTGAAGttccaTTGAAACAAGAATTTCCAAACCCAGTATACATCAAGCAGGAAGTTGTACATCCTACAGATAGCAGTCAGCACAAGTGTACCAACTGCAGCAAAACATTTGAGCTTGAATCAAGTCTCCAGACCCACTTTTGTGTCAAAATTGAAGAAGAAACTGTTTTGAAGGAGGATATACCCCAAACTGATGTTAAAGAAAATACTATAACACAAGACTCCGGCCAGAAAAAACTTAGTCCAGAAGAGCTTATAACAACCAAAACATACACATGCGaaatatgcaacaaacagtgcTCAGCCAAGCACAAGTTGAAGCAACATATTGCTACCCACAAAGaacaaaaattacttaattgtaatttttgtgaAAAACAATTCAAAACTAAGATATCTTTGAGACAACATATGCGGTACCATACAGACGAAAAGAAATTTCCATGtccaatttgtaaaaaaaaattttggagTCTTTCTGCTGTAAAGCTACATGTACCTGTACACACAGGAGAAAAACCATTCATGTGCGATATTTGCAAAAAACAGTTTGCCCATAAAATCACACTGGTCAATCACATAGCAATTCATATGGGACGTCCAACATATTCCTGTGAAATTTGCAACAAAACTTTCTTTAccaaaacttataaaaaaatgcatcaaCTTTATCACAATGATGAAAAACACCATGCTTGTGAAATCTGTAATAAAAAATTCATGCTAAAAAGTGTTTTGAAGAAGCATCTGGCAACACACACCGGGGAGAGGCCTTTTAAATGCGAAACTTGCGATAAAAGTTTCACACAGCTTATTCATTTAAAGCAGCATAAACTGACCCACACTGGTGAAAAGCCATACTCGTGTGAGATCTGTCAGAAACGGTTTGCACGCAAGAAAAATGTTAAGCAGCATATGTGTGTCCATTCTCCTCGTTCAGACATTAAAAAAGAAGTAAAACCAATGACAGTTTCCTGTGATATTTGCAGTCGCGGTTTTTCTAACATCTACAACTTGAAGAAACATATGGTGATGCACATTGGAAAGAGACAATTTTCATGCAAATTATGTAGTGCTACATTTGTAGAGAAGAATGGATTAACTATTCATTTGAGAATTCACACTGGCGAAAAGCCATTTTCATGCTATATCTGTCAGAAACAATTTAAACAGTCTGCTCATTTGAAGGCACATTCATACAGCCATTTGGAAGAGAAAACACAAATATGcaatgtatgtaataaacaatttaaatcaAAGAACTCTTTGCTTCACCATACGCGTATGAAGCACACAGAAACAccatatttttgtgacatttgcaacacatattttagtttattaagTCAGCTCACTAAACATAATAATCTGCGACATGCTTTTAAGGGGAAACCCACATGCGAAATTTGTCAAAAACAATTCAGAAGAAGGGGCAATTTAGATCGTCATATGCAACTTCATGCAAGAAAAGCATTAAAGTGA
- Protein Sequence
- MEVKVECVAVKEEPPWEEAGSRAGLYSGHELKDEVAVGPEVFQPQKVPYLVEVPLKQEFPNPVYIKQEVVHPTDSSQHKCTNCSKTFELESSLQTHFCVKIEEETVLKEDIPQTDVKENTITQDSGQKKLSPEELITTKTYTCEICNKQCSAKHKLKQHIATHKEQKLLNCNFCEKQFKTKISLRQHMRYHTDEKKFPCPICKKKFWSLSAVKLHVPVHTGEKPFMCDICKKQFAHKITLVNHIAIHMGRPTYSCEICNKTFFTKTYKKMHQLYHNDEKHHACEICNKKFMLKSVLKKHLATHTGERPFKCETCDKSFTQLIHLKQHKLTHTGEKPYSCEICQKRFARKKNVKQHMCVHSPRSDIKKEVKPMTVSCDICSRGFSNIYNLKKHMVMHIGKRQFSCKLCSATFVEKNGLTIHLRIHTGEKPFSCYICQKQFKQSAHLKAHSYSHLEEKTQICNVCNKQFKSKNSLLHHTRMKHTETPYFCDICNTYFSLLSQLTKHNNLRHAFKGKPTCEICQKQFRRRGNLDRHMQLHARKALK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -