Basic Information

Insect: Adalia decempunctata
Gene Symbol: rn
Assembly: GCA_951802165.1
Location: OX637703.1:5715066-5741812[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 1.3 1.8e+02 4.1 0.0 8 23 242 257 241 257 0.93

2 6 0.00035 0.047 15.4 3.7 1 23 264 286 264 286 0.99

3 6 1.1e-07 1.5e-05 26.4 3.9 1 23 292 314 292 314 0.99

4 6 0.0016 0.21 13.3 4.4 1 21 320 342 320 344 0.93

5 6 0.0021 0.28 12.9 2.0 1 20 350 369 350 372 0.93

6 6 3e-06 0.0004 21.9 3.2 1 23 381 403 381 403 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	1.3	1.8e+02	4.1	0.0	8	23	242	257	241	257	0.93
2	6	0.00035	0.047	15.4	3.7	1	23	264	286	264	286	0.99
3	6	1.1e-07	1.5e-05	26.4	3.9	1	23	292	314	292	314	0.99
4	6	0.0016	0.21	13.3	4.4	1	21	320	342	320	344	0.93
5	6	0.0021	0.28	12.9	2.0	1	20	350	369	350	372	0.93
6	6	3e-06	0.0004	21.9	3.2	1	23	381	403	381	403	0.97

Sequence Information

Coding Sequence: ATGGAGAGCAGATTAGACTACAGGACCGGTGGTTTGGATTTTCATCCTCCAGCGTCGATGCTACTAGATAATAACACGAACTATTCGCACCTGCAGAAGTCCATAGATACCCTGAGGTCCTTAGGCGACAGGCTAGGGGACAGGAACGTAGATCTTAGATTGAACCTTCACCAAGACTTAAGGAATTACGACAGGACCAACCAGTTGAACCTAGATAGAAACCTAGAGCTAAATTTGAGCCTAAACGGAGACAGATACCTCCAAGAAAGAATGCAACAAGAAAGAAGCTTGGAAAGGCTTCTAAACGAAAGAAACCTTCACGACCAACGAAACATGGACCACAGCTTAACAATGGAAAGACTCAGCCTCGAACGATCTCTAACCCAACACATGGACAGAGCTCTCCAAGACAAAAACCTAAACCTCTCAAACGACCGGATGATGGACAAGCAGATGCCCAACGAGCGGAGCTACGTCCACCAAAACGACAATCGCCTACCCTACCAGAACGACAGACTCCAAGAAAGGATAAGGATGGACAACAACGACATGAGGTTAGGTCAGGACATGAACGACCTCAAGTTCAGAGATTACAAGAATCACCTGGAGAATCTCAGGATGGAGGGGTCAAGGACGCAGGAGGGGAGGTTGGAGGAGGACAGGGGGACGACGCCTACCACCCCTCCCACCCCCTTATCGGTCGGGGAAAGTTTTCACGAAGAGAAGGTGTTTGGTTCCAAGGCTGAGCTCCAGCTACACACGCAGGCGCATATGCGGGAAGCGAAGCCCTACAAGTGTTCCCAGTGTTGTAAAGCCTTCGCCAATAGTTCCTATCTGTCCCAACACACGAGGATCCACCTGGGCATCAAGCCCTATCGGTGCGAGATCTGCCAAAGAAAGTTCACACAACTGAGTCATCTGCAACAGCACATCAGGACGCACACAGGAGATAAGCCTTACAAATGTCGACACCCAGGCTGTCAAAAAGCCTTCAGTCAGCTCAGCAACCTCCAATCTCACTCCAGATGTCATCAGACGGACAAACCCTACAAGTGTAACTCATGCTACAAATGCTTCAGCGACGAACCCTCTCTTCTGGAACACATCCCCAAGCACAAGGAGAGCAAACACCTCAAGACTCACATCTGCCAGTATTGTGGCAAGAGTTACACCCAGGAAACGTACCTCAGCAAGCACATGCAGAAACACGCTGAAAGGACGGACAAGAGGCCTCCCATCGGTCCCAGCTTCGGTCTCAACAGGGGACTAGATCATCCCTATTGGCCGAAAGTCAGTCCTGACAGCGCGGAAAATATGCACGACTACCCCAATGACATCCCGCGTCAGATTTTGGAGCAGAATGAAGACCTGGTGATCATCAGGCAACAGTTGAGTCAGAACCATCCTCCACCAACAGGCACGCCCAATAACCTCAACCCATACGACACCTCCATCTCGAAATCCAACGCCAACTCTGCCTTCACCCCCATCAACTCCATGTCCGGCCATCTGAACCTAAACCACCATCAATTGGCGCCCAACAGGCCCTACATCTACGACGCCCTGAGTTTCCAGAAACAGAACGGTTTGGACCTGCCCAAAAGCCAACCTTCTAACGGCTTTCCCAACCAACTTATATCGTTGCACCAAATAAGGAACTACGCTCATCAACCGAACCCCAGTCTTATGGAGCACTCGATACTGGGGGGACTTAAAGATAAGTAG
Protein Sequence: MESRLDYRTGGLDFHPPASMLLDNNTNYSHLQKSIDTLRSLGDRLGDRNVDLRLNLHQDLRNYDRTNQLNLDRNLELNLSLNGDRYLQERMQQERSLERLLNERNLHDQRNMDHSLTMERLSLERSLTQHMDRALQDKNLNLSNDRMMDKQMPNERSYVHQNDNRLPYQNDRLQERIRMDNNDMRLGQDMNDLKFRDYKNHLENLRMEGSRTQEGRLEEDRGTTPTTPPTPLSVGESFHEEKVFGSKAELQLHTQAHMREAKPYKCSQCCKAFANSSYLSQHTRIHLGIKPYRCEICQRKFTQLSHLQQHIRTHTGDKPYKCRHPGCQKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFSDEPSLLEHIPKHKESKHLKTHICQYCGKSYTQETYLSKHMQKHAERTDKRPPIGPSFGLNRGLDHPYWPKVSPDSAENMHDYPNDIPRQILEQNEDLVIIRQQLSQNHPPPTGTPNNLNPYDTSISKSNANSAFTPINSMSGHLNLNHHQLAPNRPYIYDALSFQKQNGLDLPKSQPSNGFPNQLISLHQIRNYAHQPNPSLMEHSILGGLKDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00111030;
90% Identity: iTF_00765111;
80% Identity: -