Adec017212.1
Basic Information
- Insect
- Adalia decempunctata
- Gene Symbol
- -
- Assembly
- GCA_951802165.1
- Location
- OX637698.1:5874549-5887690[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 9 1.2e+03 1.5 1.4 1 20 262 281 262 283 0.86 2 18 5.8 7.7e+02 2.1 0.1 5 20 345 360 342 362 0.90 3 18 0.037 5 9.0 0.6 1 23 368 391 368 391 0.94 4 18 0.0031 0.41 12.4 2.2 2 23 462 483 461 483 0.97 5 18 0.014 1.8 10.4 0.0 1 23 502 523 502 523 0.96 6 18 0.012 1.5 10.6 0.3 2 23 527 548 526 548 0.96 7 18 1.4 1.8e+02 4.1 1.8 1 23 610 633 610 633 0.83 8 18 0.012 1.6 10.5 0.1 2 23 646 667 646 667 0.97 9 18 2.8e-05 0.0038 18.8 6.0 1 23 704 726 704 726 0.97 10 18 0.0019 0.25 13.1 0.6 1 23 742 765 742 765 0.91 11 18 0.00036 0.048 15.3 1.3 1 23 781 803 781 804 0.95 12 18 0.011 1.5 10.6 0.1 2 23 819 841 818 841 0.92 13 18 0.00029 0.039 15.6 1.4 1 23 859 881 859 881 0.94 14 18 0.68 91 5.0 0.0 1 22 907 928 907 930 0.88 15 18 0.014 1.9 10.3 2.2 2 23 940 961 940 961 0.97 16 18 0.00072 0.095 14.4 1.1 1 23 978 1001 978 1001 0.96 17 18 5.4e-08 7.3e-06 27.4 1.4 1 23 1008 1030 1008 1030 0.99 18 18 0.00015 0.02 16.5 0.3 1 23 1054 1077 1054 1077 0.97
Sequence Information
- Coding Sequence
- ATGGCGCAGGAAGAAACAGCGATTTATAGACGCTGTTGTAGACTTTGCCTGAGTGAAAACAAGGACCCTCGACCTTACGAAGATGTAGACGAACGGGTGGTGTTGAAAGAGCGGATTTACGCTGTTCTTTCCATTGATATAAAGAAAGATGATCCCATATCCAGACTTATATGCATACCGTGCTCCCAAAAAGTCGAAGAATGGTGCGAATTCAGAAAGAGCTGCCAGAGGAACCAAACCACAATCACCTCCTGGGCCAATGAAACCGCAAACGAAACCAGGTTGCACGTTAAGGAAGAGGTCATCGAAGATGACAACCCGAGCGAAAATGACGATTTGGAAATAGTTACGGAGAATATCACGGTGAAAACTGAACCCATGGATTTCGAAACTAACGAAGTTTCTTCAACCAATGTAGCTTCTGACCATTCTGCTTTAGAACTCGTAGAAAGTGTGATGGCACAAACTGACGCTGAGTTTTCCCAGCAGGGAAAGAATGACGAAGAAGTTGCAAATGGAATAGTGGAGACCAACGTTAGAAGATTCTCAGAAAACAACCACACAGAAAAGATAGAATTTGCAGCCGGTCTCAAACTGATCAAAAGTGACTCCACCCCAATCGAAGTCGAAAGCCTTTCCCCCTTAGAAAACAGCTACTTGGAAAAATGCAAGGCGATGGCGGAAATGTACAGGTCCCTCAAATGCGCCTGCCATCAAGCCACGCATCCAAACTTGAAAGGACTGCTCTCCCACCTCAGATCCCTCAAGTTCTGGTTCCCTGTCTTCACCTGCTACAACTGCATGATCACTTTCACCGATAGGTCTTCAAGCGGCAAGCATATTCACAAATGCCCCAACAAGAACCTTGATATCTTGGTCAAATTGtccaatttgaagaaaaggaGCACCCTTAAGACTAGAATATACCAAAATTACAGATGTATCAAGTGCAGGTTTATCTATTCGTTCCACGAAGATTTTTGTAAGCATGTGGACGAAGACCATTGCGAAGAAGCCCCTCAATACACTTGCACCTGTTTGCAGACCTTCAACAACTTGGAGGACTACAAAGACCACATTTACGTCTCTTGCATGGTGGAATATTACTGTGATATTTGCAATATAGCCGTGAGGTCCTTGAAGGAATTCATAAATCATGCCCAGCATCAACATGACGGTTCCGAAGGATTCACTCTACTCCAAGATGATAATTATAAGAGGAGGACTTTCCACAAGATTGAACCAAGGGAAAATAAGGAAATTTTGGGGAAACGCAGGAGTTCCACATATGGGAGAGCTCCGGTCAATGAGGATGAACCAATGGAGGTGGATATTTCCCCAAGGCCCTCGAAGATGCCGAAAAGTAGCAGAAATATCCCGACAAAGTGTCCACAGTGCGACAAAGTGTACTCTTGCCAAGCCAACATGCTGAGACACTTCCGAATCCATCAAGAAGAAGTCAAACAAGAGAAACCCGAACCCGAAACCCAAGAAACCACCTATTACAGATGTCCCGATTGCCAAGTCATGTTCAACGCTGCAGACTGGGAGGCTCACAAGGAATCCCACGAACAGATCAAATGTGGGGAATGCGACAAGATATTTTTGTTCCAAACGGAATTAGAGCAACACAGAACGGTCCATCTGAACCTGAAAGTGTACAGAGACTCCAAAACTGACTCCTACAAGACCACCATGTTGAGTCCGAACCCAGAGCTTCCGATCTGCAACATTTGCAACATACTCTGCGAGAACTTTGAAGACTTGGAAAGTCACAAATTGTGTCACGAGGATTTGGACGATGGGGTGCCTTTGGAGCTTTCCAAATACTCCTGCGCGAAGTGCAACAAACATTTCTTGACGTACGGTGAATACAGCGACCATAACGCTAGGTTGCATGCCGATTTGCAGACTTCGAGTCAACAGTATCCGAGGCAGTGTGACGAGTGTGATAAGGTGGTGACCAGCGGTTCGGCCTTTGCAAGCCACAAGGCCATGCATAGGAGATTGAGGGAGGAGTCTGTGAGGATATCGAAGTCGAGGCCTGGATCTCCTTTGGAGAGACCGAAATCAAGAAAATCTGGGGGGAATCAAGAAGGGGAAGATTACCATACGTGTAAACGTTGCTTTAAGGTGTTCTCCAGCAAATACAACCTTAAAATGCATATGAAACTGCACGGTATAAACTTGACGACGAATAGGACCTCTAAGTCTCCGAAGAAGCACCACTGTGATAAATGCAACATATCTTTCCCCAGCAACGAAGCGCTGGTTTCCCACATTGACGACGAGCATGACGATATGCCCGAATTGGAAGAATTCAACAACGGTCCTTACATATTCACCTGCGATGTCTGCGTCCAAACTTTCTCAAACAAAGCCGCTTTGCTGCAACACAAAGCGAAGCACCATGCGGAACCTGGACCGTCTAGAAGCAGCAAGAAATTCGTGACCTACTGTAAATATTGCAAGGTTGGATTCGAGAGGACTGAAGATTTGGACGCTCACATGGTGAATGCGCACGCTGAGATCCCCGTGACTTCCAAATCTCCCAGAGTGAGTAACGGAAAAGGTTTCTGTTGTAAAATATGCAACAAGTCTTTCTCCTCCCAACCAGCCATGTACGCTCATCAAGGATGGCACAAAAGGACGAATAACGAAGGACCTCTTACACCCTCGAAGAAACCGGCCTTAATGCCCAAACCGATCAAGGCTGAGTTTGAGTGTGTCATTTGTGGGCAGGAGTTACCCAACGACGTGGCCTTGAAAATACACAGCATAGAAAAACATGGAAACGCTGCTGCCCTCCTCACACCAAAGTGCGAATCTTGCAATCAAGAATTTGGAACTCATACAGAGTACGAGAACCATATGAAGTTGCACGAGATTGTTGAGAGCCAAAAGAAGCAGGAGCAGAagcagaaagcaagtttctgttgCCAGATGTGCTCTGCCAGTTTTAGCAAGGCCGAAACCTTGCAGGCTCACGTAAAAATAAGCCATCCTGCTTTTCCTCAAGAGTATAAGTGTCCTCACTGCGGAAGGGTCTTCGATAAGCAGGCTTCTCTAACGAACCATATGAAAGTGCATGATAAGCAAAGGGTGGTGAATGTGCACGATAAGCCAAAAGTGGTGACCACTGGGAGCCCCAAGCCCCTTTATTTCTGCTCGATTTGCAGTAAAGGGTTCAATGTACCAAAGGATCTAAGGACTCATACCATAACTGCTCATCCTTTCTGA
- Protein Sequence
- MAQEETAIYRRCCRLCLSENKDPRPYEDVDERVVLKERIYAVLSIDIKKDDPISRLICIPCSQKVEEWCEFRKSCQRNQTTITSWANETANETRLHVKEEVIEDDNPSENDDLEIVTENITVKTEPMDFETNEVSSTNVASDHSALELVESVMAQTDAEFSQQGKNDEEVANGIVETNVRRFSENNHTEKIEFAAGLKLIKSDSTPIEVESLSPLENSYLEKCKAMAEMYRSLKCACHQATHPNLKGLLSHLRSLKFWFPVFTCYNCMITFTDRSSSGKHIHKCPNKNLDILVKLSNLKKRSTLKTRIYQNYRCIKCRFIYSFHEDFCKHVDEDHCEEAPQYTCTCLQTFNNLEDYKDHIYVSCMVEYYCDICNIAVRSLKEFINHAQHQHDGSEGFTLLQDDNYKRRTFHKIEPRENKEILGKRRSSTYGRAPVNEDEPMEVDISPRPSKMPKSSRNIPTKCPQCDKVYSCQANMLRHFRIHQEEVKQEKPEPETQETTYYRCPDCQVMFNAADWEAHKESHEQIKCGECDKIFLFQTELEQHRTVHLNLKVYRDSKTDSYKTTMLSPNPELPICNICNILCENFEDLESHKLCHEDLDDGVPLELSKYSCAKCNKHFLTYGEYSDHNARLHADLQTSSQQYPRQCDECDKVVTSGSAFASHKAMHRRLREESVRISKSRPGSPLERPKSRKSGGNQEGEDYHTCKRCFKVFSSKYNLKMHMKLHGINLTTNRTSKSPKKHHCDKCNISFPSNEALVSHIDDEHDDMPELEEFNNGPYIFTCDVCVQTFSNKAALLQHKAKHHAEPGPSRSSKKFVTYCKYCKVGFERTEDLDAHMVNAHAEIPVTSKSPRVSNGKGFCCKICNKSFSSQPAMYAHQGWHKRTNNEGPLTPSKKPALMPKPIKAEFECVICGQELPNDVALKIHSIEKHGNAAALLTPKCESCNQEFGTHTEYENHMKLHEIVESQKKQEQKQKASFCCQMCSASFSKAETLQAHVKISHPAFPQEYKCPHCGRVFDKQASLTNHMKVHDKQRVVNVHDKPKVVTTGSPKPLYFCSICSKGFNVPKDLRTHTITAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -