Adec032314.1
Basic Information
- Insect
- Adalia decempunctata
- Gene Symbol
- Zfpm1
- Assembly
- GCA_951802165.1
- Location
- OX637702.1:23616819-23633209[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.8 2.4e+02 3.7 0.1 2 23 6 27 6 27 0.93 2 15 5 6.7e+02 2.3 2.9 1 23 465 488 465 488 0.85 3 15 0.067 9 8.2 0.1 3 23 556 577 555 577 0.97 4 15 0.00024 0.031 15.9 0.4 2 23 586 607 585 607 0.97 5 15 0.00037 0.05 15.3 1.5 2 23 610 631 609 631 0.97 6 15 0.0024 0.32 12.7 0.6 1 23 637 659 637 659 0.98 7 15 7.1e-06 0.00095 20.7 4.8 2 23 666 687 665 688 0.95 8 15 0.86 1.1e+02 4.7 3.2 5 23 701 719 698 719 0.96 9 15 5.4e-05 0.0072 17.9 2.8 3 23 726 747 725 747 0.97 10 15 0.011 1.5 10.6 0.1 2 23 763 783 762 783 0.97 11 15 0.00016 0.021 16.4 1.0 1 20 789 808 789 811 0.92 12 15 0.00014 0.018 16.6 0.6 1 23 819 841 819 841 0.99 13 15 0.00045 0.06 15.0 4.0 1 23 847 869 847 869 0.98 14 15 1.5e-06 0.0002 22.8 4.1 1 23 875 897 875 897 0.98 15 15 0.0015 0.2 13.4 7.3 1 23 903 925 903 926 0.96
Sequence Information
- Coding Sequence
- ATGGAATCTAGTCCTGTTTGCCCTGTGTGTACCCTATATTTGAGGCCTGGGATTACCTTGAAGAATCATTTGAGCACCCATCCTAAACAAAAAGTCATAGAAGCTCTAGTTAAATTGACCGAAGTCGAATCTCAACCAGGTGAAAACAATACAAGTCTGTGCCAATCAACACAAAATCAACCTTTGAATTCCATCACAAATTCACCATGGAATGGAGGAAATATTCCAGGTCCTTCCCAGATCCAACCGCCCTTTCAAGGAAATCATGTCTTCATATACCAACAGAGCATGAGCACATCACAAACCAACACCATCAATCCCCTGGCTCAACAGTACATCATCCCCGCCGTCTTAAACCCCCAAACTATGCCTTATGTTTACCAACAACAGCAAGTGATAATGTCGAGCGGCTCTTGCCTACCCCAGATGCGCATGGCCCCCTTCGATCTGAACGGTGCCCCCGCTCTAGTAGACCCCATGACGACTGTGATCCAATCGCCCAGAATACTCGAAGAAGAGGTCAATGGGTTAGTAGAGGACGTTGAAGATCATGTTGTGGTACAAGAGTTGGATAACGGTTCTGAGGTATCCATTAAAGATGATGAGATGGAGGAAGATAAAGAACTGCTTAATTCTAGCAAAGATTCTGGTGTCGGTTCCAGAGAACAAGAAGACGATTGCGAGTTAACTTTTGAAGAGACCAAACTCGATGATTCCATAAGAATGGAAGAAGAATCTTCTGAACATTGGAATCCTTCACCTGAAGACTTGAACAAAGCGTGCCAGACGAGTTCGACATCTGCTTCCACACCTCAGATCGACAACTTCGACAAGAAAACCTACTATTACGATAACGAATCAGGGAATGCCATGAATTATGAATCTGCCATTCCGATGGAACCCACCTACGAGCAACAGGATCCCATTTACACAAGCGCCAACATTTTGCAGGCGACTGAAGACATTGATTTTGAAGTCGATGGCGTTCCAGTCATAATAGGAGAATTTGCACATAGTTCTGTGATATCTCAGGTcgatcattttgaaaatatcaatGAGGGGAATGTATTGATGACTATCGGCGAAAGCAGCGTTAAGGAAACGTTTGAGGAGGTTATAGACAATGAGGAGAGCATGTCGGGGGCGAGTACTCAGGTTAACATACAGGCTGATGAGAGGATGCCTCCGAGGGGGGAACTGTCTGGACAGGAAAGTCTTGGTGGAGCCAGCGATATTAACTGGAATAGGTTGCATTATAATGAAGTCAGTTCCAGTGCTTCTTACGATCACCTAGGCAGAGATACATGGGACGATTCCGATGTTGATTGTCCTCCGAACGAAGAAGAAAATGATGTACCAGCAGTTGTAGCTTATATTCCGCCAGCCCTAAATTTCAAATGCTCGAGCTGCGACGAAGCATTCGCCTGTCTTCAAGAGCGTAAAAAGCACACTCAAGAAAAACACTCAAACCAAGAACTGAAACAAACCACCAACGTGATAGGCTCTCAAATAGGCAAAAAGAAGGTGAAAAAACTCTCGATTAAACCAAAGAGCGAAGAGCCGAAGTTCGACACAGTCTTCACCAACAAGATAAAAGTAGAAAATACGGATTGTAAAAAAGAACTGGACGATGTGAAAACTGACGAGACTGACTGCAGAAAATTATGCGACCTATGCAGTATAGTTCTGATTGACCAGAAGGCTCTCAAAGAACATCGGCTCACAGTTCACAAGATACCGGAGAAGGCTAAACTGAAATGCTCCACTTGCGACGAGGCGTTCGCTAACGAGTACAAGTTCACCGAACACTTGAAGGTGCATCCTTTGGAATGCAGGATGTGTGGAAAACTATTCTACAGGAGGCAGAACATTCAGTTGCACATGAAGAGGCATCTTGGAATCAAACCCTACAAGTGCGAAATTTGCGAGAAGGCCTTTTTGACTAAGCAAAAATTGGATGAACACAGGAATATTCACACAGGTAACGCCCCGATAAAATGTCCCATGTGCAATGAGACATTCCGAAGACATTCAAATCTGATCCAGCATCGAAACAGGCATCATATGAACGGTAAGAGGAAGCTGAAGGATTACGTTTGTCATTGTGGCGAATATTTTCACTCGAGAAAAAAACTGGCGTGGCACAAGGAGACACACGATACGAAGCCGAAAGCTTGTACAAAGTGCAGCGAAAAGTTTGTGCATATGTCAAGTCTGACCAGGCACATGAGGAAGGCGCATAACGAAAGGTTCTTGCCATCCGAGGAGAGGAGCAACGAGAATGTGGTGTGTCCCGTTTGTAAAGGTGTGTTTATCAAGTCCTCCCTGGACATCCACATGCGCACGCATACCGGTGCCAAACCTTACTCCTGCCTTATCTGTAATAAAGAATTCAGCACCAGGTGGAACCTGAAGCTGCACAAGTGGACACATGCCTCAAGGATGTCCAAACCTTTTAAGTGCGATCAGTGCAACTCTGCTTTCGTTAGAGAGGCCGACTATACCTCCCACATGAACTCACATAAGAATATCAAACCTTACACTTGTAACTATTGCGGGGCCAGGTTTATACGTAAGTACAACTGTCAACGTCACGTCAAAGAGCACGAGAACATCAAGACCTTCAGTTGTACAGTGTGCGGCAAAAAGTTCCACAGGTCTTATTATCTCAAGGATCACATGAGGGTACACAGCGGGGTGAGACCTTTCACCTGCCATATATGCGGTAAGACTTCTACCACAAAATCTAATCATAATAAGCATGTTCAAATACATCATCCTAGGTCTCCAATGACCACAGAAAATTAG
- Protein Sequence
- MESSPVCPVCTLYLRPGITLKNHLSTHPKQKVIEALVKLTEVESQPGENNTSLCQSTQNQPLNSITNSPWNGGNIPGPSQIQPPFQGNHVFIYQQSMSTSQTNTINPLAQQYIIPAVLNPQTMPYVYQQQQVIMSSGSCLPQMRMAPFDLNGAPALVDPMTTVIQSPRILEEEVNGLVEDVEDHVVVQELDNGSEVSIKDDEMEEDKELLNSSKDSGVGSREQEDDCELTFEETKLDDSIRMEEESSEHWNPSPEDLNKACQTSSTSASTPQIDNFDKKTYYYDNESGNAMNYESAIPMEPTYEQQDPIYTSANILQATEDIDFEVDGVPVIIGEFAHSSVISQVDHFENINEGNVLMTIGESSVKETFEEVIDNEESMSGASTQVNIQADERMPPRGELSGQESLGGASDINWNRLHYNEVSSSASYDHLGRDTWDDSDVDCPPNEEENDVPAVVAYIPPALNFKCSSCDEAFACLQERKKHTQEKHSNQELKQTTNVIGSQIGKKKVKKLSIKPKSEEPKFDTVFTNKIKVENTDCKKELDDVKTDETDCRKLCDLCSIVLIDQKALKEHRLTVHKIPEKAKLKCSTCDEAFANEYKFTEHLKVHPLECRMCGKLFYRRQNIQLHMKRHLGIKPYKCEICEKAFLTKQKLDEHRNIHTGNAPIKCPMCNETFRRHSNLIQHRNRHHMNGKRKLKDYVCHCGEYFHSRKKLAWHKETHDTKPKACTKCSEKFVHMSSLTRHMRKAHNERFLPSEERSNENVVCPVCKGVFIKSSLDIHMRTHTGAKPYSCLICNKEFSTRWNLKLHKWTHASRMSKPFKCDQCNSAFVREADYTSHMNSHKNIKPYTCNYCGARFIRKYNCQRHVKEHENIKTFSCTVCGKKFHRSYYLKDHMRVHSGVRPFTCHICGKTSTTKSNHNKHVQIHHPRSPMTTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00349454;
- 90% Identity
- -
- 80% Identity
- -