Adec001770.1
Basic Information
- Insect
- Adalia decempunctata
- Gene Symbol
- PLAGL1
- Assembly
- GCA_951802165.1
- Location
- OX637695.1:21788902-21793184[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.029 3.9 9.3 0.5 1 21 14 34 14 35 0.95 2 23 4.1 5.5e+02 2.6 5.6 1 23 41 64 37 64 0.94 3 23 0.093 12 7.7 1.0 1 21 197 217 197 218 0.95 4 23 0.033 4.4 9.2 0.5 3 23 226 247 225 247 0.94 5 23 0.012 1.6 10.5 1.5 3 23 253 273 252 273 0.97 6 23 0.0048 0.64 11.8 4.1 1 23 279 302 279 302 0.96 7 23 0.00011 0.014 17.0 3.4 1 23 307 329 307 329 0.98 8 23 0.00031 0.041 15.5 4.6 1 23 440 462 440 462 0.98 9 23 1.4e-05 0.0018 19.8 3.6 1 23 468 490 468 490 0.98 10 23 0.00015 0.019 16.6 5.4 1 23 495 517 495 517 0.99 11 23 0.0054 0.72 11.6 2.0 2 23 524 545 524 546 0.95 12 23 5.6e-05 0.0075 17.9 0.2 1 23 551 573 551 573 0.98 13 23 0.00039 0.051 15.2 0.7 1 23 583 605 583 605 0.97 14 23 6.5e-05 0.0086 17.7 1.6 1 23 630 652 630 652 0.96 15 23 1.9e-05 0.0026 19.3 3.2 1 23 658 680 658 680 0.98 16 23 0.00038 0.051 15.3 1.3 1 23 686 708 686 708 0.99 17 23 0.011 1.4 10.7 0.2 2 23 715 737 715 737 0.92 18 23 0.00081 0.11 14.2 1.6 1 23 742 764 742 764 0.97 19 23 0.076 10 8.0 7.9 1 23 774 797 774 797 0.96 20 23 3.5e-05 0.0047 18.5 1.2 1 23 804 826 804 826 0.98 21 23 1.1e-05 0.0015 20.1 0.5 2 23 833 854 832 854 0.97 22 23 3.1e-08 4.2e-06 28.1 4.2 1 23 860 882 860 882 0.99 23 23 6e-05 0.008 17.8 0.3 1 23 888 911 888 911 0.98
Sequence Information
- Coding Sequence
- ATGTACGACCAGTCTTCGTACGACGATCCAGACTCGAATTACAGATGCGAAGTGTGTACATCGATATTCGAAACCAAAGAGGCATTTTTCGCTCACCACATGAGTCTATGTGGAAAAAAATTCGTGTGCTGCAAATGCACTGACACTTTTAAGACTATCTCCAGTCTTTATGAGCATTCAGAGAAATACCATTTGAACCAAGAAGAGGGGGAGGAGGAAGAGATAGTCCTGGATTATAATGGTCAGCTGGTTAAGATTCCAAACCAGAACATTGTTGAATCAAACGAGCTCCTTTATGTCCTCGACGATCCACAAAACGTTAATGAGATTGTAATTGAAGAACAACAGTGTGAACCTGAAAGAACAGATTTGTCCGAAACTGTCAGAATCGTGAAGTTAGAACATGGTTACATGCTACAAAATGAAGATGAAAGCGATCAGACTCCGACATTTAAAATTCAACGCCCTAAAAAAGTCGCAGTTCCAAAACCAAGAGCAAGTGTGCCGAAAAGAAGGCACGAATTGCCTGATTTCACCACCTCCAGCTACTTGTATTTGCAACCGAACGAAGACATTGACATACCCCATTTCAAATGTTTACGGTGCGAACAATTGTTCATCAACAAGTTCGCTTTCTTCAGACATATCGAGAAGGGAAAATGTTATATCAACAACTGCGACGTGTGCACAGAAACTTTTCAGAAAAACAGTGATTTCTACATGCACTACGCCGTACAACATACCGATAGGGCTATTTGCAATTTTTGTTTCCGAACTTTCATGTATGAAAAAAATGTCAAAGAGCATATGCTGCGGCATTTGGATCAATTCAGGCACCGGTGCGAGGAATGCAACAAAGGATTTTATACTGTGAGGGAGTATAGGAACCACTATAAGAACAGGCATATGGGGATTAGGCACAAATGCGATTTTTGTTCGAGGACCTTTGCCGATGAATATTATTTCAAGAGACACATAGCTACTCATAAGTTGAAAGTTGATTTTGGTGTTGACACTCAATGTTTTTATCGGGACGACTCTTACCCTTACAACCTACACGACGAGTTTTGCTACATACCAGAGCTGAAACATGACCACCAGCTTCATCAGGATCTCCTTCAGACATCCGTCAATAATTTCAGTCCCACCGATACGGAGTTGTTAAGAATGCTGACGACGGAAGAAGAATGTACCGCCATCTTACAAAATATAGCTGCCAGCGAACAGCTCGAAAGCTTGATGAATAACAGCGCAACATTCGGACAACCCATCGACATGCAAATCGATAACATACCAAATGAAAAGAAGGAGGCAAATTTCAAATGTGAGATATGCAACAAGTGTTATACAACcaagaaaatattgaagaagcATTTGGGAACACATGTAGGAGTGAAATCTTTCGTTTGCAGCGTTTGTGGCAAGAAATTCAGACATAATTGTGATCTAACAGCACATGAGAAGGTTCATAAGAAACCTGGGTTTCAATGTGATATTTGTTCTAGTATGTTCATACATAAATCTCATTTGATAACGCATAGAAGGAAACATTTAGGTGAATACGTTGCGTATTGCAAAGATTGTAGTATTGGTTTCGTTAGAAAAAATTTGTACGATAATCATAGGAGAGTTCATCATGACGGTGAAAAATACATTTGTGATACTTGCGGACAATCGTTAACTACTTCTTCAGCTCTCAAGGAACACAAGGCAACACACGAGGAAAATTACGGTGAAGAACGGCAACATGTATGTGAGATTTGCGGCAATCGCTACTTGACCTCCAGAAACTTGAATGCACATATGAAAATACACAGCAGGACCACCAATGAAAACGCATCTGATTTATGCGAAGTCAAAATCGAAGAAGTTCAAAATGATCCTCCCTTCAGCTGTCCTAAGTGccccaaaaatttcaaaaaaaaaattcgcctGAAAAAGCATCTTTTGGCGCACAGCGAGGAACGGCCGTTCGAATGCAATACTTGCAACAAAAGATTCAAAAGAAAATACGAAGTAACAGTTCATAATCGAACCCACACCAACACCAATTCGTTCCAGTGCGATTTCTGCTTGAAAGTACTGAAATCTAAAGGGTCCTTGAGCACCCATATAAAGCGACATCTGAAGGAATACGTTGCAACATGCGAATTCTGCGGAGCGGGATTCGTTACCAAACAGGAGTACCAAAACCACGTTGGTTCTAAGCACGGACAAAGTATACACGTGTGTGATATTTGTAATAGGCCATGTTACGACAAAGCAGCTTTACAGAGTCATCGGGCTAGACACGAAGAAGGCTATGAAACGAATCCGAAACACAAATGCGAGTTATGTAATAAAACATTCTTGCAGGAGAAATATTTAAAACACCATCACATGAGAATCCATAAGAATGGTGGACAAAGGTATATATGCGACCACTGTGGTAAGAGGGTGAATTCTAAAAGAAGTCTGAGGGACCACCTATTGATTCATAAAGGTTTGAAGCCGGTGGAGTGTCCACAATGCGACAAGAAGTTTGCGTTGAAAACCACCTTGAATCTTCATCTGAGGACGCATTCAGGAGAAAGGCCATATAAATGTCAAGATTGCGGTAAATCTTTCACACAGAGAAGTTCCTTCAAGACCCATATGAGATACCATACCGGGGAGAGGCCATACCAATGCGATTTTTGTGATCAAGCTTTTGTAAGCAGAGGAGCCATGACTCTGCACATTAGAAGTAGACATTGA
- Protein Sequence
- MYDQSSYDDPDSNYRCEVCTSIFETKEAFFAHHMSLCGKKFVCCKCTDTFKTISSLYEHSEKYHLNQEEGEEEEIVLDYNGQLVKIPNQNIVESNELLYVLDDPQNVNEIVIEEQQCEPERTDLSETVRIVKLEHGYMLQNEDESDQTPTFKIQRPKKVAVPKPRASVPKRRHELPDFTTSSYLYLQPNEDIDIPHFKCLRCEQLFINKFAFFRHIEKGKCYINNCDVCTETFQKNSDFYMHYAVQHTDRAICNFCFRTFMYEKNVKEHMLRHLDQFRHRCEECNKGFYTVREYRNHYKNRHMGIRHKCDFCSRTFADEYYFKRHIATHKLKVDFGVDTQCFYRDDSYPYNLHDEFCYIPELKHDHQLHQDLLQTSVNNFSPTDTELLRMLTTEEECTAILQNIAASEQLESLMNNSATFGQPIDMQIDNIPNEKKEANFKCEICNKCYTTKKILKKHLGTHVGVKSFVCSVCGKKFRHNCDLTAHEKVHKKPGFQCDICSSMFIHKSHLITHRRKHLGEYVAYCKDCSIGFVRKNLYDNHRRVHHDGEKYICDTCGQSLTTSSALKEHKATHEENYGEERQHVCEICGNRYLTSRNLNAHMKIHSRTTNENASDLCEVKIEEVQNDPPFSCPKCPKNFKKKIRLKKHLLAHSEERPFECNTCNKRFKRKYEVTVHNRTHTNTNSFQCDFCLKVLKSKGSLSTHIKRHLKEYVATCEFCGAGFVTKQEYQNHVGSKHGQSIHVCDICNRPCYDKAALQSHRARHEEGYETNPKHKCELCNKTFLQEKYLKHHHMRIHKNGGQRYICDHCGKRVNSKRSLRDHLLIHKGLKPVECPQCDKKFALKTTLNLHLRTHSGERPYKCQDCGKSFTQRSSFKTHMRYHTGERPYQCDFCDQAFVSRGAMTLHIRSRH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -