Basic Information

Gene Symbol
ARID5B
Assembly
GCA_951802165.1
Location
OX637702.1:17427022-17447171[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.6 1.6e+04 -2.5 0.0 37 52 203 218 201 232 0.82
2 2 4.9e-24 3e-20 73.6 0.0 3 89 312 395 310 395 0.93

Sequence Information

Coding Sequence
ATGGATAATAATGTGGTTCAGTTTATCGGCTCCTCTTGTGGACAGCATGGACCTTATACATTCTATAAAGCTTTCAAATACAAGAAAAACGATGTGAATAGAATAGTGACTttgggtgaatttttttttgtgaaactgtGGATCGACTCTGATTTATTGTGCATCGGTGAACTGCAGTTGTTATGGATTGATAAGAACAGTGAACAAGTTTTGGCCAGCCTCAGGCTGTATTTTTTGCCCGAAAATACTCCTGAGGGGCGTATGGACCATGGCGAGGACGAAGTGCTGGCCATAGCTGAAAAGGTGGTACTCAGGGTGGAGGACCTAGTTACGTGGATAACAGTAGATGCAGAATGGACGTGGGGGAGGTTAGGAAGATGCAGCAAACAAGTGAAAGAGCCCCCCGATGGAGAAAAAGAAGACATCGGTCCGGTGTCACTTTCCGACAGTTCCCTGGACTTCAGCGACGTCGAcaaagaaaaacaaattttagaaaatgagGTAGGTGACCTCGGGCCGTCCGTGGTGATCCTCAGCTACCCCAAATACTGCCGGTACAGGGCCACGATGAGGCGTTTGGAAGGCGTAGAAGACGAGTTCCTCAAATATAACCTAGTGAAAGCTCTCGGCGGGTTTTCATGCAGTTCCAAAAATACCAGAGTGATGTTCTGCAAGGACACGTTCGAGTATCCCGACCTCGAAGGTCACGAATTGCTCTGCAATCACCTGGCGCCCAAGCTGAAGGGACGCCCTAGAGGCAAGAGAAAAAAGAGGAGCGTCTCGCCAGGCTCGGAGAGCAACGAATCTGAATGTTCTGTGGTGACATCTATTACCGCTAAGtcaaaagtATCGACAGACAACAATAAGAACGGTTATTGTTTGGATTCTGCCGCACCTAGAAGAAGTACAAGATCATCGGATAGCAGTGATACCAAGgagtttttgaaaaaactcACTTCGTTCATGAAGATGAAGAGAACGCCTCTTGGTCGAACGCCTTGTTTGGGCACCAAAGAGATCGATCTTCATGACTTCTACACAAAAGTACAAAAAATGGGAGGATATGACTCAGTGACATCGAATCGTTTGTGGAAAAATGTCTCGGACGATTTGAGTGGCCAGCCGAATTCGGGTGCATCTTCAATTGTCAAGAGGCACTATGAAAGGTTTTTGCTGCCTTATGAACGTCACGTCAGAGGAGAAGAATACAAGCCATTACCGGTTTCTGAAAGAAGAAGACTGAAATCCAAATCCGCAAACAATGCGCAATCTGAAAGCTTCAACGAAGTGGACAGAAATGTTCCCGTTTCTTCAGCTGTTGTCGATGATAAGTCTCCCTCTCCAAAAACAGCAGCACAAGAAACCAACGGAAGTGTCAAACAAGAACCTAAACTTTCATCATTGAGGAGCGTCAGGGTTAAACCAGAACGACAAAAGCATAAATACGCTAAAATACTGAAACAGAAAATGAGTGAAACAGACCCAATGGAATTCttcgattttgaagaaaaaattcctaaagaaataacagaagtTAAAGAAGAAGAGAAACAAGACGAAAATCAATCGATAAAAATTGAGAAGTCTACAGTTGATGAAAAACCTGACATAGAAATCAAGTCCGCTGTGGAAACCGAAAAGAACGAGTACAAAGAAAGCGAAAGTGAGGATGCAGTGAGTAAAAACGAACAATTGGTGATACTGGACGTCTCAGATGAAAACGATCAGAAAGTTCCGAGTCTCGAGAATATAAAACAGGAGACGATGGACAAAACAGAAAAACCGACATTTATAGATGAATTGAGGAAGAAAAAGTTGGATTTATTGAAAGTGGGCGGTTTGGAAGTCACCCCAGTTCATTCCGGTCCAACAAAAAATGAAGCAAAAGATCTGTTTATACCTGCGAAGAAGACAAGGAAAGAAAACCAAATCTCCAGTCCTTCCCCTGTTGAATGTTTACCTCTCAACATCCCCCAATCGTTGAACATCAGCAAAGTCACGGTATCATCCACCCCAAAATCCTCCAACAAGTTGGGAGCAGTGTTCCCTTTCCCCGAAAAAACTGATTCTACGACGCCCCCCAAGGTGGTCCAGTCCAGATCCATCTACTCGTACTCCGAAAAAACGGTTTACGGCAACCCCAAAGACTGTCTAGTGAATAGTTACTCCGTGCACACCCCCAAGGCTCCGGTGAATTACGCGAGACCGACCGGCGGGGATCTTTTGGACTTGACCGTAGCCAGTCCCCAGAAACCTATCTTCGACAACAGAGTGCCCGGTGTTCATGCATCGTCAACGATTCAGTACAACACTCCGAAAAACGTGGTGAAGGCTGCTAATTTGCCGATTTTCGAGGGGAGAAAGTTGGGGTCCAACCTGGAAATCACGCTGGTGGATTCGAAAGAGCGGACGCCTGTGCAGTTTTCGAGGGAACCGGAAAGTTCTAGAGTGATGAAAACGGATTATTCGATGCATAAAGTGCCGAATAAACCTGGGAATTCCAACAAGAGGAGGATTGAAGAGAATGGCGAATACGTAAGACCGTCCACGTCGAGCAACCGGAAAAGGTGCAAGGAAGACAATGAGACCAACAACGTTTCTTCGGTTAGTAAACGAGGAAACAACTCTGCAGCTAAGACGGTAGCTGAAGCCGCTTCCAACCCTAAATATTTCCAGCAAAGCGTCCAGTTCCCCCATTATTTGTCCCAGTTTTACGACGGGAATAAAGGTGTGAATCCTTATTTCCCGATGATTGACCCGCTGTTGTATTCTGCGGCTTTGCAGAGTTTGTATCCCCAGACCCAGTCTCCGCTCCTTCAGTTCACGTCCCAGGAACAACTTAAGTTTTATTCGGATCTGATGGCGCAGCAATCTAGGGTACCTTTTCCTTTCAGGATGCCCACAGATGAAGAATTTCCCAACAATACCAAGAAATAA
Protein Sequence
MDNNVVQFIGSSCGQHGPYTFYKAFKYKKNDVNRIVTLGEFFFVKLWIDSDLLCIGELQLLWIDKNSEQVLASLRLYFLPENTPEGRMDHGEDEVLAIAEKVVLRVEDLVTWITVDAEWTWGRLGRCSKQVKEPPDGEKEDIGPVSLSDSSLDFSDVDKEKQILENEVGDLGPSVVILSYPKYCRYRATMRRLEGVEDEFLKYNLVKALGGFSCSSKNTRVMFCKDTFEYPDLEGHELLCNHLAPKLKGRPRGKRKKRSVSPGSESNESECSVVTSITAKSKVSTDNNKNGYCLDSAAPRRSTRSSDSSDTKEFLKKLTSFMKMKRTPLGRTPCLGTKEIDLHDFYTKVQKMGGYDSVTSNRLWKNVSDDLSGQPNSGASSIVKRHYERFLLPYERHVRGEEYKPLPVSERRRLKSKSANNAQSESFNEVDRNVPVSSAVVDDKSPSPKTAAQETNGSVKQEPKLSSLRSVRVKPERQKHKYAKILKQKMSETDPMEFFDFEEKIPKEITEVKEEEKQDENQSIKIEKSTVDEKPDIEIKSAVETEKNEYKESESEDAVSKNEQLVILDVSDENDQKVPSLENIKQETMDKTEKPTFIDELRKKKLDLLKVGGLEVTPVHSGPTKNEAKDLFIPAKKTRKENQISSPSPVECLPLNIPQSLNISKVTVSSTPKSSNKLGAVFPFPEKTDSTTPPKVVQSRSIYSYSEKTVYGNPKDCLVNSYSVHTPKAPVNYARPTGGDLLDLTVASPQKPIFDNRVPGVHASSTIQYNTPKNVVKAANLPIFEGRKLGSNLEITLVDSKERTPVQFSREPESSRVMKTDYSMHKVPNKPGNSNKRRIEENGEYVRPSTSSNRKRCKEDNETNNVSSVSKRGNNSAAKTVAEAASNPKYFQQSVQFPHYLSQFYDGNKGVNPYFPMIDPLLYSAALQSLYPQTQSPLLQFTSQEQLKFYSDLMAQQSRVPFPFRMPTDEEFPNNTKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-