Apis015127.1
Basic Information
- Insect
- Acyrthosiphon pisum
- Gene Symbol
- -
- Assembly
- GCA_005508785.1
- Location
- NC:158395895-158399896[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.2 1.6e+02 2.9 0.0 3 19 154 170 152 173 0.71 2 13 0.00019 0.0095 16.3 0.7 2 21 272 291 271 292 0.94 3 13 0.00064 0.032 14.6 4.2 2 23 311 332 310 332 0.96 4 13 0.011 0.56 10.7 1.9 1 23 366 389 366 389 0.92 5 13 1.8e-05 0.00092 19.4 3.2 1 23 420 442 420 442 0.98 6 13 0.00068 0.034 14.5 3.1 1 23 448 470 448 470 0.98 7 13 0.0036 0.18 12.2 0.3 1 21 476 496 476 496 0.96 8 13 0.021 1 9.9 0.1 4 21 497 514 497 515 0.93 9 13 5.4e-05 0.0027 18.0 1.8 1 23 547 569 547 569 0.98 10 13 0.011 0.55 10.7 0.9 2 21 594 613 593 614 0.93 11 13 0.024 1.2 9.6 3.2 2 23 617 639 616 639 0.93 12 13 0.047 2.4 8.7 2.3 1 23 646 668 646 668 0.97 13 13 0.3 15 6.2 0.2 1 23 698 721 698 721 0.95
Sequence Information
- Coding Sequence
- ATGTTGAGTTTTACTAATAACAACGTTGATACTGGAAAATGGCAAGAATTTGTATCGGATGAAATTCAATTTGACCATAAAAAttgtttagACAATGAATTACCTCTTTCATCAATAGGGACTACTAATAACATTGATACCAAAAAATGGCAAGATATCATATTGGATAATATTCAATCTAACATGGAAAAaGACTCAAAATATGAGTTGCCATTTTCATCAATATCCACGATTAATGTTGACCATAGAAATGCAAAACATCAAGATATTAATTTGGATGGTTCTGAATCTGACATAGAAAActaTTCAGATAATGAGCTACCTCTTTCATCAATAGCAAATGTATTGCTTCCAATTGATAGCTGTAAAGTCGTAAAAAGTGAAGTTGTAAAATCTGATTCAAGTCAAATGTCCATCAAAgaacaaagtaaaataaatataccaattaaGAAGTACGGATGTGATATTTGTGGGAAAATATATCTCACACGAATTgcaattattgaacattttagaaCTAGTTTATGCTTTCCAGAAAGTCCTTTTGATCTTGAACACAACAACCCTACTTATAACTTTTGCAACAattctgaaaatgtaatatcatacaccaacataagtaatttaaaaactaataatacaaaAGATATGACCAACAAGTGTAGAATTTGTCAAAATGTAATTAGAAATGGTAAATTTACAAAAAGGCGTAACATATCGCATACTAAAGGAAATAACTTATGTAATATATGTTcagtattaaatagtattgCATGTGGAAATAATCACCACCTTAAAGAAAAGTATACATGGAAATGTAAAACTTGTGGGCAGTCATTTACTAAATTATCTGTTTTAAAAGCTCACATATGCATTTTTTCAAAGACTAATAAATTGAACGCCCTGGAAAACCATAAAACTCTTACATTGCATTGcgatatatgttataaaaaattttttaaacaatcatCTTTAAAAGATCATAAAAGAATACACAATTTAAGACGTATCAGCCAACGATGCAATATTCGTTTAAAGTACTTGAATTATAGTGTATTAAGACATACAAAAAGAGTCCGCAATTCATCCCAAAATTATGAATGTTCAAGATGTTCAAAAGTATTTCATAAACGTTCAGAAATAATAtctcatatttttgaaaaccatcAAGAAGATTATTCCAAATATAGTTGTGACGATTGTACAAATTTATGTGATTCTTCACGGGACTATATTTTACGTCTAGGAAAAAACCATTTCAAATGTGATGTATGTCCCCAATCATTCACTACATCTCATAGACTACAACAGCATTATAGATGGCATCTTGGTATCGATAATTTTAAATGCGAATTCTGTCCTGAGACATTTTCGAAATGTTCTCTTTATTTATCTCATGAAAGAATTCACACTGGAGAAAGACCATTCAGATGTAATTTTTGTGGCAAATGGTTTCCAGaaacatcaaatttaaatattcatttaaaaccCTATTGTCAAAAATCATATACTCAGATGTCAACATTATTATCCCATAAAAGAATATgtgctaaaaaaaaacatctagaAAATAAGAGTTATAATCAGCTGTCTACTATGGATGTACGTACAAGAAGACAATGTACTAGAAGAAAGCAGTTTAAGTGTAACGTATGTGCCAAATCATTTTTTCATTCATGGTCATTAAGTGCTCatctaaaaatacatcaaaataacaAGAATGTGAAAAAATCATCCTTAAACAAACACAAGATACCACAAAAAAATGCCATATGCATTAAATGTGATTTATGCCAAGAACTATTTTATGACAAGAATAATTTAATCGCTCATAGATGCAAGTCATCTACTTGTACTTGTTGTCTAAAAGTATTTGATAATGTTTCTTCACTTAAAAGACACTACAGGTATAtgcatcaaaaaaataatatactctatgactgtgatatttgtaatatatcatttatgtgTTCAACTAGTCTTAATGAACATAGAAAAAATCACACTCAGCTTGAAAAAAATACCCCTCTTAAACTCAATTCCAGCAATgaaataaatacagtaaatgaagaaatgtacttaaataaagaatataaatgtGATCTTTGTATGAAAAGTTCGTTCAATCAAGCACAAATAGTTGCTCATATTCTAGAAACtcattattag
- Protein Sequence
- MLSFTNNNVDTGKWQEFVSDEIQFDHKNCLDNELPLSSIGTTNNIDTKKWQDIILDNIQSNMEKDSKYELPFSSISTINVDHRNAKHQDINLDGSESDIENYSDNELPLSSIANVLLPIDSCKVVKSEVVKSDSSQMSIKEQSKINIPIKKYGCDICGKIYLTRIAIIEHFRTSLCFPESPFDLEHNNPTYNFCNNSENVISYTNISNLKTNNTKDMTNKCRICQNVIRNGKFTKRRNISHTKGNNLCNICSVLNSIACGNNHHLKEKYTWKCKTCGQSFTKLSVLKAHICIFSKTNKLNALENHKTLTLHCDICYKKFFKQSSLKDHKRIHNLRRISQRCNIRLKYLNYSVLRHTKRVRNSSQNYECSRCSKVFHKRSEIISHIFENHQEDYSKYSCDDCTNLCDSSRDYILRLGKNHFKCDVCPQSFTTSHRLQQHYRWHLGIDNFKCEFCPETFSKCSLYLSHERIHTGERPFRCNFCGKWFPETSNLNIHLKPYCQKSYTQMSTLLSHKRICAKKKHLENKSYNQLSTMDVRTRRQCTRRKQFKCNVCAKSFFHSWSLSAHLKIHQNNKNVKKSSLNKHKIPQKNAICIKCDLCQELFYDKNNLIAHRCKSSTCTCCLKVFDNVSSLKRHYRYMHQKNNILYDCDICNISFMCSTSLNEHRKNHTQLEKNTPLKLNSSNEINTVNEEMYLNKEYKCDLCMKSSFNQAQIVAHILETHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -