Basic Information

Insect: Acyrthosiphon pisum
Gene Symbol: salm
Assembly: GCA_005508785.1
Location: NC:24770904-24854237[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 6.9e-06 0.00035 20.8 0.9 1 23 672 694 672 694 0.98

2 6 1.4e-05 0.00069 19.9 2.1 1 23 700 722 700 722 0.98

3 6 0.029 1.4 9.4 4.1 2 23 1105 1126 1104 1126 0.97

4 6 6.7e-07 3.4e-05 24.0 1.3 1 23 1132 1154 1132 1154 0.99

5 6 7.9e-07 4e-05 23.8 2.1 3 23 1415 1435 1413 1435 0.96

6 6 1.9e-06 9.6e-05 22.5 0.7 1 23 1441 1463 1441 1463 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	6.9e-06	0.00035	20.8	0.9	1	23	672	694	672	694	0.98
2	6	1.4e-05	0.00069	19.9	2.1	1	23	700	722	700	722	0.98
3	6	0.029	1.4	9.4	4.1	2	23	1105	1126	1104	1126	0.97
4	6	6.7e-07	3.4e-05	24.0	1.3	1	23	1132	1154	1132	1154	0.99
5	6	7.9e-07	4e-05	23.8	2.1	3	23	1415	1435	1413	1435	0.96
6	6	1.9e-06	9.6e-05	22.5	0.7	1	23	1441	1463	1441	1463	0.98

Sequence Information

Coding Sequence: ATGTCCCGCAGAAAGCAGTCCAGACCGGTCAAGGTCCTCGAGGACGGGTCTGAGGAAGAGTGCACCAGCGGCATCTCTCACGGAGAACCAGGCGCGGCCGTTGTTGTCAACGGGCACCACGTAGCTACGTCCACGCGTCGATTCGACGACGGTGCGACATCGATGACTTCAGATGATGAAGATGATGAAGAGAATGGGCCGATGCACGGTGAAAAGTTGCCTAGAAAGTTGTCAAATACGTGCAGACAGTGTGCCATGGGATTTCTGAGTTTTTCCGAGCTGTCGGAACACAACAAGACGTGTGTGCTCCGAACCGGCGCCGCCAACAACGCAGACACTTCCGATGATTTCGATCATCGGAACGATCACGACGACACAGACGATGTCGAAGATGATGAAGAACCAGAGGATGACGAGGACGTTGTAGACGACTTGGACGACTTGGACGAGATAGACGACTATCACCGTCACGGACACCATTACAACGCGGCCGGTTTGCAGGCAATGGCCGTAGCCGATTTAAGGAGTAGCTGTCACAATAACAatatcaacaacaataataataacaacaacaacaataaggCGCACGAAGAGCAGAGGAGACAGCGGCAGGACGCTGAGAACAACAACCGCCGTTACGGTGGTGGTCTGCCAGACTCCGTCATCGCCGGCGACGACCTCAGGGTGGCCATAGAAGAAAATATGGCCGCAATTGAGGTGTCGACCGGTTTTCCGTTAGCCGCTTACCGAGCGGCCGTGAATGCGGCTGCCGCTTCGGTTGACATACCAACGCTCCAGCAGCAGGTGCAGCAGGTGCAGCAACAACAAGCGGCAGCCGGTCACCATGTGACACTCGAAGCGCTGCAACACACCAAAGTGGCCGTTGCACAGTTCGCGGCCACCGCAATGGCTGTTAATAACGGTGCCGTCAGCAACCAAAACGTGCTACAAGACTTAGCCATCGTCAATTCATCACTGTTCACGTTGCAACATCAGCAGATGATGCAGTTGAGCCTCATCCAACAGCTCCGTCAACAGTTACAAATAAGCCGTCGGAGTGGCGGTGGTGCTGGTACCGGAAGTATCGATGGAACCTTGTCTGTGTCGCCGCCACTACTCAGCGACGGCAATGACGATAGCACCGCGGTCATGTCAACCATGGCAGGGGCTTCGCCCAACGACATACCCATGTCACTATTGGCCATATCGCGGAGTAACGCCGAAATGTTGAACCAGATTGTACAGCACCATCAGGCCGCACTATCCCCGCCTCTGCCCCCACCGCCCCCGCAACAGTTGCTACCGGCAGTCACGCCGCTTTCAATTCCGGTACCCGTACCGATGTCCATGTCCACGCAACAGTCCACCGGCGACTGTACCACGCAAACGCCACTACTTCAGCTCAGCCGATCTCCGTCGCCGTCTACCTCACGCTCGCCGACGCCTCCACCGCCATCCATCATGGCCATAATGGTGCCCGAACTGCAACGCCCCGCTCCGTCGCCAATGCAAGCTTTGCAAGCATCCGTGTTGCCGGTACAAAccccaccaccaccgccgcagCAGCAGCTGCCGCTCCAACCGACCGCCGTCCAGACCGTGGCGGCCGAGAGTGCGCCGCAGCCACCACCTCCGGCCACGCTTCAGTCACAGCCTCAGCCGTCTACATCATCGTCGACATCGTTTTCGCTGACGCCGTACACTTCTTTGCCAATCGTCACGCATCATCATTCCATCCCGTCGTGCTCCGTTTCGTCCGCGTTTGCATCGTCCATCATCACCAACTTGGACCCGCCGCCATCGCCCAGCGAACCCAACACGCTGGAAACGTTGCAACGCCGTGCCCAAGAAGTTCTGGACAAGGCCAGTCAAGGCATGATGGCCAACAATCTCGCGGACGAGCTTTCGTTCCGGAAGGGCTCTAATAGCGGTGGAAAGGGCAGCTCACTATCACCATACGACGGTAAATCTGCCGGTGGCAGTGGTGGAAGTCGAGGAGACAACTTTTACAAGCACAGGTGCCGTTACTGTGGCAAGGTGTTTGGTAGCGACTCGGCCCTTCAGATACACATCAGATCGCACACGGGCGAACGTCCGTTCAAGTGCAACGTTTGCGGCAGCCGGTTTACCACTAAAGGCAACCTCAAAGTCCATTTTCAAAGACACACGTCGAAATTTCCCAACGTCAAAATGAATCCGTTGCCGGTTCCTGAACACTTGGACAGAGACTTTCCGGCACTGATGCCACCGCACTTGAACCAGAGTCCACACCATCAGAACGGATGCAACTCACAAATGCCACCCAGCTCTACTGGTGCCGTCACTCCGCGGTCTCCGTTGTCCCATCAGTTTTCCGCAGCCTCGTCCGCCTCGTCTTTTCCGACGGCTCTATCCAATCTATTCCGACCCAGTGGCAGCCACCATGGCCAGCAACAACATCATCAATCGTCATCGACAGACATAGCACTCCCATCGAATATTCAAATGCCGTcacagcagcaacagcagcctGCCGAACAGTTATTAATGACAAACCATCATCAACAACATCATCaccaacagcaacaacaacagcaacacaATATCCACCAGCACCATCAcaagcagcaacagcaacatcACCTGTCGAATAATCACTCATCATCGCTACAACTGTTTCAGTTCAAACGCGAACAAGAGCAACCTGAGAACTTGAGCAAGCCTGCTAACGCTGGCTGCTCCTCCCGCGAATCGTCTATTCCATCTCCTCCGCCTCTCTCCGATTCCAGTATGACACGCAACAACAAAGACGATCCTACATCCTCCGAGTACATTGAAGATATGGCCGTGGACATCGACTCAGCTGACGTCGATGAACGTCAAAACGACATTGATGCTAACACTGACGACTTTAGCGTCGATACTAAATACAGTGGGGAAGAAGAACGGACCAACAGTCCTACTATGAATGAAGGATTACAAGACCAACCTGAAAACCTTTCCAACAAAAGTGGCAGAGCAATGATGGCTAGTCCACCACTAATCACTTCGGACGAGTCTTTTTCTCCCAGGCCAACGTCGTCGTCTTCGCGGCACCACGGTTCCCAGGCTGGATCACCCGTATCGATGTCCTTCCACAACAGCAGATACTCGCCACCTTGCGCCCTGGACCTGACGCCCAAACAGTCGGCATTGCCCACCACTGCCAATCACATCATGTCTACGTATCTGCCACCTGCGTTCGCCGGGCTCATGGCAGGATCTGCTACTTCCGCGGCCGGACTTCCTGGCCACGGACCGTCATTCGGACCATCCGCTGCTCGAGGAAACACCACGTGCAACATCTGTTTCAAAACGTTCGCGTGCCACTCTGCTCTCGAGATTCACTACAGGAGCCATACTAAGGAGCGGCCTTTCAAATGTTCCGTGTGTGACCGAGGATTCTCGACAAAGGGTAATATGAAACAGCACATGCTAACGCATAAGACTCGAGACATGTCGTCGACGGGCGCTGGCGGAGGCAGCTCGTCGAACAACATGTTCGACGGCAACAACTCGACTAGCTGTGGTCATGATGACACAGCCAGCAACGCAAGCTCAGAGAGCCGTGAAGCGGCCCAGCATCACCTGCATCACCAGCAGCATCATCAGCACCAGATGCATCACCACCAACAGCAGATCATGCTTTTGAGTGTAGCCGCACAAAATGCCGCAGcagctgccgccgccgccgtggcTGCAGTCACAGGATCAGGTTCATCTGGAGCGGTGACTGGTGGAGTCGGGCCTCGATCTctgccaccaccaccgccgccgcctccaccaccaccaccaccaccacaggTCGTATTGCAACAGCTTGCAAACGGTATGATGCCCGCGGTGACCGGTACCGTGACTCCGGTATCGGCGAACGCGTCCACGAGCACCGGGCCTTCGTCGACCAATACCGCGGTCCAGTTGGCGGCCGACTTGTCCCCGCCACCGGtccaacaacagcaacaacaggCCGCGTCTGCACAGACGCCCCCGTCGCAACCACTGTCGGCTAAATCCTCGATCCAACCGGTGGTCACACTGTCCGTACCCACCGTTGGCCAGCAGCAGCAGTACAACGCTCCGGGCTCTGGTTCCAGAAAACCGCCGGCCACGACCGAGGGAGGTCTGTCGTCttcttcgtcgtcgtcgccaaAACGCTCATTGGCCGACCCTGACTCCGGTTTGCCATCGGCTAAGAGACAACCAAGTTCGCCCAAACACTTGTGTAACGTGTGCAACAAGAACTTCTCCTCGTCCTCTGCACTACAAATCCACATGAGGACCCACACGGGTGACAAGCCTTTTCGATGCACAGTGTGCCTGAAAGCGTTCACGACCAAAGGCAATCTCAAAGTGCACATGGGAACGCACATGTGGACCAATGGAACTTCCAGGAGAGGGCGGAGAATGTCGCTAGAACTTCCACCATTGCAGATCGCCAACAGTGTCAAAGAAACGGATTTCCTCCAACGTAGACAAGAAATCTATTACCATCCGTTTCTGTCTAGTCCGTATTTAAACGGAATACATCAACAAAAGATCAACGAGATATCGGTAATCCAGAACGTTAACAGCAACGTCAACAATCGCATTCTGAGTGGGTTCGGAAACTTTGGCGGCGGCGCTACGTTCCCGGGCGACATGATGAAACAAGAGCCGAGCATCGCGGCCGATAAGCAGAACAACGTCatgtcgtcatcgtcgtcgccACCGTCCCACCACATAAGGACACCGCCACTTTGGGACCTGCACTACGACCGGCAGACAGCCGTCAACATCAAGTCCTCCGACGACCATCAGCTCAACAACTGCGCGCCCCAATCTCCGCAGTCGTCGCCGATAGCACACACAAATCACATCTCCCAGAACCGCACCGAAGGTCTAGCGACATAA
Protein Sequence: MSRRKQSRPVKVLEDGSEEECTSGISHGEPGAAVVVNGHHVATSTRRFDDGATSMTSDDEDDEENGPMHGEKLPRKLSNTCRQCAMGFLSFSELSEHNKTCVLRTGAANNADTSDDFDHRNDHDDTDDVEDDEEPEDDEDVVDDLDDLDEIDDYHRHGHHYNAAGLQAMAVADLRSSCHNNNINNNNNNNNNNKAHEEQRRQRQDAENNNRRYGGGLPDSVIAGDDLRVAIEENMAAIEVSTGFPLAAYRAAVNAAAASVDIPTLQQQVQQVQQQQAAAGHHVTLEALQHTKVAVAQFAATAMAVNNGAVSNQNVLQDLAIVNSSLFTLQHQQMMQLSLIQQLRQQLQISRRSGGGAGTGSIDGTLSVSPPLLSDGNDDSTAVMSTMAGASPNDIPMSLLAISRSNAEMLNQIVQHHQAALSPPLPPPPPQQLLPAVTPLSIPVPVPMSMSTQQSTGDCTTQTPLLQLSRSPSPSTSRSPTPPPPSIMAIMVPELQRPAPSPMQALQASVLPVQTPPPPPQQQLPLQPTAVQTVAAESAPQPPPPATLQSQPQPSTSSSTSFSLTPYTSLPIVTHHHSIPSCSVSSAFASSIITNLDPPPSPSEPNTLETLQRRAQEVLDKASQGMMANNLADELSFRKGSNSGGKGSSLSPYDGKSAGGSGGSRGDNFYKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTSKFPNVKMNPLPVPEHLDRDFPALMPPHLNQSPHHQNGCNSQMPPSSTGAVTPRSPLSHQFSAASSASSFPTALSNLFRPSGSHHGQQQHHQSSSTDIALPSNIQMPSQQQQQPAEQLLMTNHHQQHHHQQQQQQQHNIHQHHHKQQQQHHLSNNHSSSLQLFQFKREQEQPENLSKPANAGCSSRESSIPSPPPLSDSSMTRNNKDDPTSSEYIEDMAVDIDSADVDERQNDIDANTDDFSVDTKYSGEEERTNSPTMNEGLQDQPENLSNKSGRAMMASPPLITSDESFSPRPTSSSSRHHGSQAGSPVSMSFHNSRYSPPCALDLTPKQSALPTTANHIMSTYLPPAFAGLMAGSATSAAGLPGHGPSFGPSAARGNTTCNICFKTFACHSALEIHYRSHTKERPFKCSVCDRGFSTKGNMKQHMLTHKTRDMSSTGAGGGSSSNNMFDGNNSTSCGHDDTASNASSESREAAQHHLHHQQHHQHQMHHHQQQIMLLSVAAQNAAAAAAAAVAAVTGSGSSGAVTGGVGPRSLPPPPPPPPPPPPPPQVVLQQLANGMMPAVTGTVTPVSANASTSTGPSSTNTAVQLAADLSPPPVQQQQQQAASAQTPPSQPLSAKSSIQPVVTLSVPTVGQQQQYNAPGSGSRKPPATTEGGLSSSSSSSPKRSLADPDSGLPSAKRQPSSPKHLCNVCNKNFSSSSALQIHMRTHTGDKPFRCTVCLKAFTTKGNLKVHMGTHMWTNGTSRRGRRMSLELPPLQIANSVKETDFLQRRQEIYYHPFLSSPYLNGIHQQKINEISVIQNVNSNVNNRILSGFGNFGGGATFPGDMMKQEPSIAADKQNNVMSSSSSPPSHHIRTPPLWDLHYDRQTAVNIKSSDDHQLNNCAPQSPQSSPIAHTNHISQNRTEGLAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00973288;
90% Identity: iTF_00942150;
80% Identity: -