Apis003582.1
Basic Information
- Insect
- Acyrthosiphon pisum
- Gene Symbol
- -
- Assembly
- GCA_005508785.1
- Location
- NC:7053685-7061579[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0003 0.015 15.7 3.8 1 23 107 129 107 129 0.97 2 12 0.00096 0.048 14.0 4.4 2 23 139 160 138 161 0.95 3 12 4.1 2e+02 2.6 1.1 1 23 311 334 311 334 0.89 4 12 0.065 3.2 8.3 1.4 1 23 340 362 336 362 0.88 5 12 0.00066 0.033 14.6 3.9 2 23 433 455 433 455 0.96 6 12 0.00011 0.0054 17.0 3.1 3 23 516 536 514 536 0.97 7 12 7e-05 0.0035 17.6 5.0 1 23 539 561 539 561 0.97 8 12 0.027 1.4 9.5 1.6 2 21 576 595 575 596 0.94 9 12 0.00011 0.0053 17.1 0.3 2 23 659 681 659 681 0.97 10 12 0.0008 0.04 14.3 4.0 2 23 689 711 688 711 0.96 11 12 7.8e-05 0.0039 17.5 0.6 1 23 743 765 743 765 0.98 12 12 0.0059 0.29 11.6 0.1 1 19 770 788 770 789 0.95
Sequence Information
- Coding Sequence
- atgactTCAATGAAAAACTTCACACAAGTTGAAGTCACTGGTGATGCTGATGCTGTTACCAGtgaaTTATATGTTGAAAACACGATTGAAAATCCTGCATGGTATACAGTTGAAGATAATCATGTTTCTTTGGTATCTGAAAATATTGAGAAAGTCATTAAGCTTGAAACTGATGTGTTGGATGATTGTATATGGGAAAGTAGAATCGAAATTACTAAATATGCTGACAACCAAAGTAATATGGAGTTACCCTTGGAAAGTCAGAATGtcgcagataataatatttacttaaatcatgaaaatataagtgataaaatatttcattgttatatttgtggaaaaaactttttttataattatcttttaaaaaaccACTTGAACGAACACAAAAGACaagcatattataaaactaataaatgtaaattttgtggaaaacagttcaagttaaaatttggtTTGGATAGACACATTCAAAAACATCACAATTCCATGTGTACAACAAGTGTATCAACTGCTATGCACACCAATATACCGAACAATGACATTATTTCATATCCAAGGCAAACTAAAATCATAACGAATACCTTGGAAAGAAATAGTTCAAATCAAATAGAAAACCAGCTAGCTTCGACTGTTACGTACACCAATATCCCGAACAATCACATTATTTCATATCCAAGGCAAACTAAAATCATATCAAATACCTTGGAAATAGCAATACCTGGTAAATACCCAGTAAATAGCAATGAATCAACTTTGGCAAACGAACCTGGTGATTTAATGGCGGAACAATTTCCTATTAAtacagctaataataatattgaatctaTAATTAGAGACACACCTTATTTCTGTATTATAAAATCGCTTAATATTGAAAATGGATTTTGCAATGATGATTATGATCAGACATCAGAAAACAAGCTTATATTTACAtgcaaaatttgtaaaaatcaacCATCTACAGATATACATTCATTTGCATTACACATGAGTGAGCACAGGGAGTGTAATATGCATGAATGTATTGTGTGCGATAAAAAATTCAACTATATAGGTCTTTGGACAGCGCATATGACCTATCATCAACAGCAAATAGATTTGAATATGTCAACAGTTCAGTTTAATCTTTTAGAGAAGGAATCTAATACATTTGATACTAATAATGAGAATAATAAACTTGAACCAAATGTAATCCAAAACAGCACAAGTATAGAAAATAACAACACTGATTCTGCGACAATGTCAAGAAACcaaaaaaaagaaaccaaatcatcgtcaattaaaaaaacgaattactgtaatttatgtaataggAAATTTACAAAGcgcttttattttacaaatcataTGATGATgaagcataatataaaaacagacACACAAAAACAACTTACACTGATTGATTGTAATGAATCAATCATTTTGTCTGAAAACATAGAGCCGACTAATGAACAcgaaaacaatttatcagttccggtaaataacaaaaataacaatctgAACTATCGTGTTAATAAAAGCAATGAGAAGAAGTCAACATTTTGTACAGTTTGCAACAAACATTTTGGACATCTTGGTGCCCTAACCAATCACATGCGTATTCATATAAAACATCACTGTGATATGTGTGAGAAAAAATTCTCTACTCCATTCCAATTGAATGTTCACCAAAAGTCACATCCAAAAGCAAAGATTAAATCTATAAGTCatggagaaaaaataaaatgtcgatATTGCAAAAAAGAATGTGACTCGATATCTCAGTGGAAAAATCATATGTCAATGAGCAAGGAATGTCGTCGCCATTGTAAGAGTTACCTTCCAGaatttacatcaaataaaactgtgttaaataaaacttatttgaaTACTCGTGATAATACCGGTTCACAAAAAGACAAATTAATGGACGTAATTCATCAAAAACCAGCGattaagaaacaaaataaaattaatcacatTAATGGTGCTAAATGTGATTTATGTGGTAAAATATAcagtagtataaattatttaaaaaaacacatatccaTGATTCACAAACAAACTTATGAACCTATGACCTGTAGTTTTTGTGGAATAACATTTAAACACAAATTTTCTTACGAATCACATTTAAGAAATAAACACAAGCAATTATCTAAACATTATGAAGGAACAAACTCTACATATAAAAGAACCAGCGGGCAAATTATatcagtaaataaaaaaaatagtatgaaatACATTtgcgaaatatgtaaaatgaaGTTTGAtgacaatattacattacaaaagCATACAAAGATACatactttaaatacatataagtgTAATGACTGTGGTCAGCAGTATGAGACAAATCTTGCTCTCAGTAATCATGTTTGGGAAAACCACAGTGCtatctaa
- Protein Sequence
- MTSMKNFTQVEVTGDADAVTSELYVENTIENPAWYTVEDNHVSLVSENIEKVIKLETDVLDDCIWESRIEITKYADNQSNMELPLESQNVADNNIYLNHENISDKIFHCYICGKNFFYNYLLKNHLNEHKRQAYYKTNKCKFCGKQFKLKFGLDRHIQKHHNSMCTTSVSTAMHTNIPNNDIISYPRQTKIITNTLERNSSNQIENQLASTVTYTNIPNNHIISYPRQTKIISNTLEIAIPGKYPVNSNESTLANEPGDLMAEQFPINTANNNIESIIRDTPYFCIIKSLNIENGFCNDDYDQTSENKLIFTCKICKNQPSTDIHSFALHMSEHRECNMHECIVCDKKFNYIGLWTAHMTYHQQQIDLNMSTVQFNLLEKESNTFDTNNENNKLEPNVIQNSTSIENNNTDSATMSRNQKKETKSSSIKKTNYCNLCNRKFTKRFYFTNHMMMKHNIKTDTQKQLTLIDCNESIILSENIEPTNEHENNLSVPVNNKNNNLNYRVNKSNEKKSTFCTVCNKHFGHLGALTNHMRIHIKHHCDMCEKKFSTPFQLNVHQKSHPKAKIKSISHGEKIKCRYCKKECDSISQWKNHMSMSKECRRHCKSYLPEFTSNKTVLNKTYLNTRDNTGSQKDKLMDVIHQKPAIKKQNKINHINGAKCDLCGKIYSSINYLKKHISMIHKQTYEPMTCSFCGITFKHKFSYESHLRNKHKQLSKHYEGTNSTYKRTSGQIISVNKKNSMKYICEICKMKFDDNITLQKHTKIHTLNTYKCNDCGQQYETNLALSNHVWENHSAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -