Apis011191.1
Basic Information
- Insect
- Acyrthosiphon pisum
- Gene Symbol
- -
- Assembly
- GCA_005508785.1
- Location
- NC:157547507-157555738[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2e-05 0.00098 19.4 5.2 1 23 128 150 128 150 0.98 2 11 2.4e-06 0.00012 22.3 1.3 1 23 156 178 156 178 0.98 3 11 4.4e-05 0.0022 18.3 5.8 1 23 188 210 188 210 0.98 4 11 8.2e-06 0.00041 20.6 2.8 1 23 216 238 216 238 0.98 5 11 5e-07 2.5e-05 24.4 0.8 1 23 244 266 244 266 0.96 6 11 2.8e-06 0.00014 22.0 5.5 1 23 280 302 280 302 0.99 7 11 0.0016 0.079 13.4 3.7 1 23 308 330 308 330 0.99 8 11 2.9e-05 0.0014 18.8 2.3 1 23 336 358 336 358 0.97 9 11 7.2e-05 0.0036 17.6 2.9 1 23 366 388 366 388 0.99 10 11 0.0019 0.093 13.2 1.6 1 23 394 416 394 416 0.98 11 11 2.7e-05 0.0014 18.9 1.8 1 23 422 444 422 444 0.98
Sequence Information
- Coding Sequence
- ATGTCCAAGATTTCACCAGAAATATGTTTGCCACAAAATATAAgactaaataaattcattaaacaaGAATATATTGATGAACCGACAGAAAACTATGATGATGCTAATGATTGTCAAACAACTTATCAATGtgacataaatgattttaaatgtaaaatagaaaATCTAGAAACTGCAATAAAAACTGAAGTGGATACAATTGGTATTAatgtatatgaaacttttatcaAGAGAGAACACAATGATGTACCATCAGTTGTGTCTAATACAATTGACAAGTTACACTTTGAAAATAATCCTAAACATTCCAATCTCAACAAAAAAGccttaactaaaattaaacgcAAATTGAAATCGTCAGAAAAAAATGAGGAAAAACTACACAAATGTACCATTTGTAACAAATCATTTGCATTCCAAAAATATCTCAATAGACACTTTAAGATTCATAAGACTACTAAAACATACAAATGTGATATTTGTAAAGAATCATTTTCTAATGCATCGAGATTTAATAGGCATACAATGATTCATAAACCTGGCTATGATATATTAAAACCATACAGgtgtcatatttgttttaaatcgtTTGctcaattatcatatttatgtaaacacaaaattattCATAGAACTCATAAGCCATTTATTTGTGGTATatgtaataaatcattttttcagaAACATAGTATCAGAAAACATATTAGGGTTCATACAGGAGAAAAACCttacaaatgtttaatttgtaacAAATCTTTTTCtgatgtatcaaatttaaatagacATAAAGTGATTCATATACCCTATGATCCATCAAATCCTGATGCTCAAAAaccatataaatgtaatatttgttttaaatcatattcAACAAACCACGAACTCAAAAAACACAAAAGAATTCATACGGGTGAAAGACCGTTTAAATgcaatgtttgtaaaaaatcatgtttacgTAAACAAGATATGGAAAGACATGTTAGAATTCATATGGGAGAGAAACCATTTGAATGTTTggtttgtaataaattttttactcttgaatcaaatttaaaaaaacacaaaaaactcCATATTATACCCCGTGAGATGTTATATAAATGTGATATTTGTAATGAATCTTTTTTACGAAAATACCACATGAAAAGTCACATTCAGATTCATATGGGAGAAAAACCATATAAATGCATGACCTGTTATAAATCTTTTCTGCAAGCATCAAGTTTAAGTAAACACAAAATTGTTCATAAACCCCATAAACCATTTAATTGTGCTATCTGCAAAAAATCATTTGCtcagaaaaaacaaataaaaattcacctgaaaaaacataaaatatag
- Protein Sequence
- MSKISPEICLPQNIRLNKFIKQEYIDEPTENYDDANDCQTTYQCDINDFKCKIENLETAIKTEVDTIGINVYETFIKREHNDVPSVVSNTIDKLHFENNPKHSNLNKKALTKIKRKLKSSEKNEEKLHKCTICNKSFAFQKYLNRHFKIHKTTKTYKCDICKESFSNASRFNRHTMIHKPGYDILKPYRCHICFKSFAQLSYLCKHKIIHRTHKPFICGICNKSFFQKHSIRKHIRVHTGEKPYKCLICNKSFSDVSNLNRHKVIHIPYDPSNPDAQKPYKCNICFKSYSTNHELKKHKRIHTGERPFKCNVCKKSCLRKQDMERHVRIHMGEKPFECLVCNKFFTLESNLKKHKKLHIIPREMLYKCDICNESFLRKYHMKSHIQIHMGEKPYKCMTCYKSFLQASSLSKHKIVHKPHKPFNCAICKKSFAQKKQIKIHLKKHKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -