Basic Information

Insect: Acyrthosiphon pisum
Gene Symbol: -
Assembly: GCA_005508785.1
Location: NC:89841487-89851401[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 3.3e-05 0.0016 18.7 1.1 1 23 107 129 107 129 0.96

2 21 0.0045 0.22 11.9 6.2 2 23 139 160 138 161 0.95

3 21 0.0013 0.065 13.6 3.1 1 23 207 229 207 229 0.99

4 21 4 2e+02 2.7 6.2 1 20 261 280 261 282 0.91

5 21 0.039 2 9.0 0.1 2 20 300 318 299 320 0.93

6 21 0.00089 0.044 14.2 2.4 1 23 325 347 325 347 0.97

7 21 0.7 35 5.0 1.6 1 23 756 778 752 778 0.88

8 21 0.31 16 6.1 4.0 1 23 875 897 875 897 0.92

9 21 0.017 0.84 10.1 6.0 3 23 953 974 952 974 0.97

10 21 0.00097 0.049 14.0 2.8 3 23 1035 1055 1033 1055 0.96

11 21 0.00086 0.043 14.2 4.4 1 23 1060 1082 1060 1082 0.99

12 21 2e-06 9.9e-05 22.5 0.8 1 23 1138 1160 1138 1160 0.98

13 21 0.055 2.7 8.5 1.1 1 23 1166 1188 1166 1188 0.96

14 21 0.0062 0.31 11.5 1.0 2 21 1224 1243 1223 1244 0.94

15 21 0.011 0.54 10.7 1.9 1 23 1274 1297 1274 1297 0.96

16 21 4.2e-05 0.0021 18.3 0.2 2 23 1341 1363 1340 1363 0.95

17 21 0.00072 0.036 14.5 3.2 2 23 1371 1393 1370 1393 0.96

18 21 0.00028 0.014 15.8 0.9 1 23 1425 1447 1425 1447 0.97

19 21 0.00088 0.044 14.2 0.4 1 23 1452 1475 1452 1475 0.95

20 21 0.00034 0.017 15.5 0.4 2 23 1507 1528 1506 1528 0.97

21 21 5.1e-06 0.00025 21.2 2.8 1 22 1534 1555 1534 1555 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	3.3e-05	0.0016	18.7	1.1	1	23	107	129	107	129	0.96
2	21	0.0045	0.22	11.9	6.2	2	23	139	160	138	161	0.95
3	21	0.0013	0.065	13.6	3.1	1	23	207	229	207	229	0.99
4	21	4	2e+02	2.7	6.2	1	20	261	280	261	282	0.91
5	21	0.039	2	9.0	0.1	2	20	300	318	299	320	0.93
6	21	0.00089	0.044	14.2	2.4	1	23	325	347	325	347	0.97
7	21	0.7	35	5.0	1.6	1	23	756	778	752	778	0.88
8	21	0.31	16	6.1	4.0	1	23	875	897	875	897	0.92
9	21	0.017	0.84	10.1	6.0	3	23	953	974	952	974	0.97
10	21	0.00097	0.049	14.0	2.8	3	23	1035	1055	1033	1055	0.96
11	21	0.00086	0.043	14.2	4.4	1	23	1060	1082	1060	1082	0.99
12	21	2e-06	9.9e-05	22.5	0.8	1	23	1138	1160	1138	1160	0.98
13	21	0.055	2.7	8.5	1.1	1	23	1166	1188	1166	1188	0.96
14	21	0.0062	0.31	11.5	1.0	2	21	1224	1243	1223	1244	0.94
15	21	0.011	0.54	10.7	1.9	1	23	1274	1297	1274	1297	0.96
16	21	4.2e-05	0.0021	18.3	0.2	2	23	1341	1363	1340	1363	0.95
17	21	0.00072	0.036	14.5	3.2	2	23	1371	1393	1370	1393	0.96
18	21	0.00028	0.014	15.8	0.9	1	23	1425	1447	1425	1447	0.97
19	21	0.00088	0.044	14.2	0.4	1	23	1452	1475	1452	1475	0.95
20	21	0.00034	0.017	15.5	0.4	2	23	1507	1528	1506	1528	0.97
21	21	5.1e-06	0.00025	21.2	2.8	1	22	1534	1555	1534	1555	0.96

Sequence Information

Coding Sequence: ATGACTTCAATGAAAGACTACATAAAAGTTGAAATCACTGGTGATGCTGATGCTGTTTCCAGtgaATTATATGTTGAAAACACTATTGAAAATCCTGCATGGTATACAGTTGAAGATAATCATGTTTCTTTGGTATCTGAAAATGTTGAGAAAGTTATTAAGGTTGAAACTGATATGTTGGATGATTGTATGTGGGAAAGTAGAATTGAAATTACCAAAGATGTTGCTAACCAAAGTAATATGGAGTTACCCTTGGAATGTCAGGATGttccagataataatatttacgtaaatcatgaaaatacaagtgataaaatatttcattgtaatatttgtgGAAAaagctttgttttaaattatcttttaaaaaatcacTTGGCCGAACACAAAAGACAAGTAAatcataaaactaataaatgtaaattttgtaaaaaacagtttaagttaaaatttggtttGAATAGACACATTCAAAAACATCACAATTCCATGCATAAATATTCTAAGTATATTGAACACAAAAAATACCATGAAAGAAGAGATCAAACTAAGTTTGATACCATtcctaatataaaattgtgCAAATTAAACGGTGTTTGGAAAAGTAAAAcaaatgaatttaaatgtaacatttGTTTCCAAAAATGCTATAATGAAAAGAATTTGGCCGAACATATGGAAACTCATGACAATTGTCAAACACAGTGTAATGATTGCTTAGATTATGTTTCAGTTTCTGAATTGAATAATCATAtggaaaatattcataacaaacatttatttaaatgccaGAAGTGTAACcaacaatttcaaaaacaacGACATTTAAATTGTCATTTAATTCATTGCTTAAGGAGTTCAAATAAAGTTTGTGGTAAAACCAAGGCTATTGGAAAAACTTGTTCTGCTTGTGgaatggtttttaataattctttatcATTGACAAATCATACAACTATTGGTTGTAAGCATTACACTTGTAAATATTGTGGACAATTTTTTAGTACAAGGAATTTTTGGCTAAAACATACGGATGTTCACAAAAAAGTTGAGCAATGTGCAATGTTGAAAGTAAGTACTAATAAAACATCTACAGTAAGAGAATTTAATCAAACTGAAGTTGTACATGATCCTTCTATTAATACAAACGGAAGACAATTCTTATCCAGAGATGTTACAGGAAGATATAGTTCAGATCGTACCAGATTAGTGAACAGCAGTTCAACAATTGTTTCAACTTCTCCACATAAATCAAGGCCAAACAATTACATTATTCCAAATCCTGAGAAAACTAATatcttagaaaaaaatagttcaGATCAAACATGTTTAATTAACAGTGCAACAATTGTAACGACTGCTCCACACACCTATATCccaaacaataacattatttcaaATCCAGGGCAAACTGAAATCTTATTGAATACATTGGAAAGAAATAGTTCAGATCAAATAGGTTTAGTAAGCAGCAATTCAATAATTGTACCAACTACTCCTATGGCTCCACGGCCCTCAATGCAGCCATTAAGTGAGAATCTTCCACCCTTATCAAATACCTTGGAAAGAAAGATTCCAACCCAAATAGAACACCAGCTAGAGAGAAGAAATTTATTTCCAGAGCCGGTAGTTCCAGCAGACATAGttcacaacaatattatgattattaaacaGGAAAAATTCTTTCATAATACTGTCAGAGACCATTTTCAACGTCAAATAATGATTCAGCAATCAAATGAACTGGGACAGCAATCAAGTGTATCGATTTCTCCACATAATTCAATAGGATACAACAATAGCCCTGTTCTAAGTATTAAGCAGGAAACAACTAGTTTAGAACAAAATTTAGCAAACAGCAATGAATCAATTGAAACGACTCCTCCACAAATATCAATGACAAACAATTTCAATCTCCTAAATATAAAGCAAGAAAAAAACTTGTGTACAAATGTTAGAGAAAGTAATAGTTCAGATCAAGCGGATTCAGTGAATAGCAATGAATCAACTTTGGCAAATGAACCTCGTGATTTAATAGCAGAACAAAACCCTATTAatatagctaataataatattgtatctacaGTTAGAGAAACACCTTATTTCTGTATTAGAAAATTgcccaatattaaaaataaattttgccaTAATGATCAGACATCACAAgacaatgttatatttatatgtagaatttgtaaaaattctcCATCTACAGATATACATTCATTTGCATTACACATGAGTGATCACAGTGAGTGTAATATGCATGAATGTATTGTGTGTGATAAAACATTTCAATCTGTAATTCTTTGGAAAGACCATATGACTTATCATCAACAGCAAATAGATTTAAATGTGTCAACAATTCAGTTTAATCCTATAGAAACTGAATCTAATGCATTAGACCCTATTAAATCTAGAAACATGGAACCTCAAGTTTTTAAAAACCTAAGAAATAGAAAATCCAAGATATCTTTATCGGACGATTCACATTCAGATACAACAAGGTTAAATAGtggcaacaaaattaaataccaaTATGACTgtagtacatttaaaaaagtacttCCTTCCACAAGCGCATTAAAAGTTCATCAAACTCTTCAGAGTAAATCACAACCGTTTTCCTGTAGgtattgtgataaaaaattttctGGCAAAGGTCCATGTACAAATCATGAAAAATCTCATTTCAACtcgcacaattttttattacaaaataatgagAATATTAAACTTGAACCAATTGTAATCCAAAACAGCATAAGTATAGAAGACAACAACTCTGATTCTGAGACAATGTCAAGAATACAAAATATGAGAAACAAATCAtcatcaattaaaaaaacaaatttctgtAATTTATGTAATAGAAAATTTACAAAGCGCTGTTATTTTACAAATCATATGATGATTAAGCACAATATAAATCCAAACACACCAAAACAACTTGCATCGATTGATTGTAACGAATCAATCATTCCATCTGAAAACATAGAGTTGACTAAtgaatatgaaaacaaattatcagttccagtaaattacaaaaataacaatctgAACAACCATGTTCATAAAAGCAATGAAAAGAAATCAACATTTTGCATGTTTTGCAACACACATTTTGCACATCCTGGTGCTTTAACCAATCACATGCGTATTCATGGTTGTAAAACATACAAATGTCAGTATTGCCACATGCAATTTAGTAGGAAAGGCCTTTATATTATGCATGAGAAAAcacatgtattaaaaaatgtagttaaaaGTGCTCCcattcaaaacaaaaacaatatagttgtagAAGTTAATGATGAACCACAAATTGAGCATTATGATTCTGAGATTATTCATAGTCCAGTTTATGGTAATTCAAGTGGTACAAATTTGATGGACATAGAACATTTATGGTTTCCCTGTGATGTGTGTGATAAAAAATTCTCTACTCCGTTCCAATTGAATGTTCACCGAAAGTCACATTCTGAAATTGTACCATATGTATGTAAGATTTGTAATAGAACTTATCAGTTGAAATTTCGATGGAATTGGCATTTAAAAGGCCACTACAAAAAACACAatgcaaatttaaaaagtaagcAGCATACTAATAATCTAAAATCGAACATTACTAAACTAAAGATTGAATCTATAAGTCATAAAGATAAAATGAAATGTCGATATTgcaaaaaagaatataattcgATATCTCAGTGGAAAAAACATATGACAATGAGCAGGGAATGTCGTCGTCATTGTAAAAGTAACCTTCCAGAGTTTACATCAAATAAAGCAACAAAGAATTCTACAAAATCTGGTCGATTCAgatgtaatatatgtatgaaaACATATAGTACTGCTTACAATCGGacagtacacaaaaaaaatgttcataaagtGTTAGATTCAACGTATTTGAATACCTATGATGATACCGGTTTACAAAAAGATGAATTAATAgacaaaattcaacaaaaacCAGCAATTAAGAAACGAAATAGACGTAATCACATTAATGGCACTAAATGTGAGTTATGTGGTAAAACATACAGCAATGGAGCTAATTTAAGTCGCCACATATCCATAATTCACACACAAACTTTTGAACCTATGACCTGTAATGTTTGTGGAAGTACATTTAAGCACAAATATTCTTACagagaacatttaaaaattaaacacaaacaattatttaaacattatgaaGAAACAAACTCTACATATAAAAAATCAAGACAGCAAATCATAtcagtaaataaaacaaatattatgaaatacttttgtaaaatatgtaaaatgaaGTTTGCTGACAATGTTACATTACAAGAACATTTAAAGTTACatactttaaatatgtataagtgTAAAGACTGTGGTCAGCAGTTTGAGACAAATCTTACTCTAGGTACTCATATTTTGGAAAACCACAGTGCCAGTATTTCTACATCTAATAAAAATGAACATGTTGAGAATTATGAGAGACAAAATACTTCTCtagaaataatgaattataattttgttcagtgtgaaatttgtttgaaaatctTAAAAACCCCAAAATATTTAAGATCACACATGAGATTACACACTGGTGTCAAACCATTCAAATGTGATAAGTGTAACAAGGCTTTCAGATTTAAATCAAACTTAAAAGTGCATCAGAAGAAAGATTTGGCATGTTTTACcccataa
Protein Sequence: MTSMKDYIKVEITGDADAVSSELYVENTIENPAWYTVEDNHVSLVSENVEKVIKVETDMLDDCMWESRIEITKDVANQSNMELPLECQDVPDNNIYVNHENTSDKIFHCNICGKSFVLNYLLKNHLAEHKRQVNHKTNKCKFCKKQFKLKFGLNRHIQKHHNSMHKYSKYIEHKKYHERRDQTKFDTIPNIKLCKLNGVWKSKTNEFKCNICFQKCYNEKNLAEHMETHDNCQTQCNDCLDYVSVSELNNHMENIHNKHLFKCQKCNQQFQKQRHLNCHLIHCLRSSNKVCGKTKAIGKTCSACGMVFNNSLSLTNHTTIGCKHYTCKYCGQFFSTRNFWLKHTDVHKKVEQCAMLKVSTNKTSTVREFNQTEVVHDPSINTNGRQFLSRDVTGRYSSDRTRLVNSSSTIVSTSPHKSRPNNYIIPNPEKTNILEKNSSDQTCLINSATIVTTAPHTYIPNNNIISNPGQTEILLNTLERNSSDQIGLVSSNSIIVPTTPMAPRPSMQPLSENLPPLSNTLERKIPTQIEHQLERRNLFPEPVVPADIVHNNIMIIKQEKFFHNTVRDHFQRQIMIQQSNELGQQSSVSISPHNSIGYNNSPVLSIKQETTSLEQNLANSNESIETTPPQISMTNNFNLLNIKQEKNLCTNVRESNSSDQADSVNSNESTLANEPRDLIAEQNPINIANNNIVSTVRETPYFCIRKLPNIKNKFCHNDQTSQDNVIFICRICKNSPSTDIHSFALHMSDHSECNMHECIVCDKTFQSVILWKDHMTYHQQQIDLNVSTIQFNPIETESNALDPIKSRNMEPQVFKNLRNRKSKISLSDDSHSDTTRLNSGNKIKYQYDCSTFKKVLPSTSALKVHQTLQSKSQPFSCRYCDKKFSGKGPCTNHEKSHFNSHNFLLQNNENIKLEPIVIQNSISIEDNNSDSETMSRIQNMRNKSSSIKKTNFCNLCNRKFTKRCYFTNHMMIKHNINPNTPKQLASIDCNESIIPSENIELTNEYENKLSVPVNYKNNNLNNHVHKSNEKKSTFCMFCNTHFAHPGALTNHMRIHGCKTYKCQYCHMQFSRKGLYIMHEKTHVLKNVVKSAPIQNKNNIVVEVNDEPQIEHYDSEIIHSPVYGNSSGTNLMDIEHLWFPCDVCDKKFSTPFQLNVHRKSHSEIVPYVCKICNRTYQLKFRWNWHLKGHYKKHNANLKSKQHTNNLKSNITKLKIESISHKDKMKCRYCKKEYNSISQWKKHMTMSRECRRHCKSNLPEFTSNKATKNSTKSGRFRCNICMKTYSTAYNRTVHKKNVHKVLDSTYLNTYDDTGLQKDELIDKIQQKPAIKKRNRRNHINGTKCELCGKTYSNGANLSRHISIIHTQTFEPMTCNVCGSTFKHKYSYREHLKIKHKQLFKHYEETNSTYKKSRQQIISVNKTNIMKYFCKICKMKFADNVTLQEHLKLHTLNMYKCKDCGQQFETNLTLGTHILENHSASISTSNKNEHVENYERQNTSLEIMNYNFVQCEICLKILKTPKYLRSHMRLHTGVKPFKCDKCNKAFRFKSNLKVHQKKDLACFTP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00942112;
90% Identity: -
80% Identity: -