Basic Information

Insect: Acyrthosiphon pisum
Gene Symbol: -
Assembly: GCA_005508785.1
Location: NC:140160234-140169678[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 5.9e-06 0.0003 21.0 1.8 2 23 300 321 299 321 0.97

2 10 1.2e-05 0.0006 20.0 0.7 3 23 329 349 327 349 0.98

3 10 1.4e-06 7.2e-05 22.9 0.2 1 23 355 377 355 377 0.98

4 10 1.2e-05 0.00061 20.0 0.9 1 23 383 405 383 405 0.99

5 10 6.4e-06 0.00032 20.9 0.8 1 23 436 458 436 458 0.99

6 10 2e-07 1e-05 25.6 1.0 1 23 464 486 464 486 0.98

7 10 1e-05 0.00052 20.2 3.0 1 23 492 514 492 514 0.98

8 10 7.7e-07 3.9e-05 23.8 3.9 1 23 520 542 520 542 0.98

9 10 2.2e-07 1.1e-05 25.5 0.4 1 23 548 570 548 570 0.98

10 10 0.5 25 5.5 2.7 3 23 578 599 576 599 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	5.9e-06	0.0003	21.0	1.8	2	23	300	321	299	321	0.97
2	10	1.2e-05	0.0006	20.0	0.7	3	23	329	349	327	349	0.98
3	10	1.4e-06	7.2e-05	22.9	0.2	1	23	355	377	355	377	0.98
4	10	1.2e-05	0.00061	20.0	0.9	1	23	383	405	383	405	0.99
5	10	6.4e-06	0.00032	20.9	0.8	1	23	436	458	436	458	0.99
6	10	2e-07	1e-05	25.6	1.0	1	23	464	486	464	486	0.98
7	10	1e-05	0.00052	20.2	3.0	1	23	492	514	492	514	0.98
8	10	7.7e-07	3.9e-05	23.8	3.9	1	23	520	542	520	542	0.98
9	10	2.2e-07	1.1e-05	25.5	0.4	1	23	548	570	548	570	0.98
10	10	0.5	25	5.5	2.7	3	23	578	599	576	599	0.94

Sequence Information

Coding Sequence: ATGATGTCAGTACAGTTTCGAATAGATTTAATGTCACATTTGTCGGATATTGCTAGATTTAAACAATGTGAGGTGCCACTTGCAAGGGCGTCCGCAGGAATTTGTCAAACAAAgggcaaaatattttcctttttaaattttttgtttcagtATCCTAAATtcctatgtaataataaagtattgttTGTGACACGTTTTCTTTTATATACCAGTGCATCAAATACACACAAAGACGTCAGTTTCCATCAGTTTCCAAAGAATGAAACTATACGATCAATTTGGATTGACTCTTTAAGTATAAAAGAAGTTGTTAAAGACTGGCATCGAATTTGTAGTGCACACTTTTCTCCAGatcattttacttttaaaaatgaacgGAAGATTTTAAAACTAGGTGCCAttccaaaaatgAAAGAAGTGAAAGACGAAGTCGGAAGTTGTGAAACTTCTTTAGAACATGACGTGAATTTAATGAATAACAGTGTAATTGATGTTGATTGTTGTCCTGATATTGACGTTTCAAATGAATATCCACCAAGTACAAGTAAAagtccTTCAAAAAACACcaagaaaaagaagaaaaaatctaAGgtTGTAAATAGTAAAGAAGTTATGTCACCGAAAAAATCGAATAAATGTAAACTACAGACGTCGGACAAAGAATACTCAAAAAACGATACACCTCAATCAGTGGAAACGGAAGTGGGGACATatgttagtaataattatattggtgaAGACGGCGGTaagaaattagaattttttgatTCTCTAGACGATCACACTTCGGAATATCGAACCATGACCGACACAGGTATGTATTTTGGCCAATATTGTAATCAAACGTCTAATAATGCATACGGTGACAAAAATGTTCTCACTGGAAACACTCCTCTCCAGTGCGACTTTTGCTTTAAAACGTTTGCGTACAGATCTAATTTGCTTGTACATAGAAGAACGCACACCGGTGAGAAACCATATGGGTGCGACGTTTGTGGACTAGCATTTATGATGCAAAGTCATTTAGTTAGACATCAAAGAACGCACACCGGGGAGAAACCATATGCGTGCGATGTTTGTGGAAAATCATTTTCGGAAGAAGGAACTTTGGTTAAACATAAAAGAACGCACACCGGTGAGAAACCATATGAGTGTGATGCTTGTGGCCGATCATTTTCGGAAAGAAATAAATTGGTTAGACATAAAAGAACGCATCCATCGTCTATCAATGCCTACAGTGATAAAAATGTTCTCACTGGAAACACTCCTCTCCAGTGCGACTTAACCGTCACAGATAGGAAAACATATGAATGCGACGTTTGTGGACTAACAGTACACAGTCTCAGTAATTTAATTAGACATCAAAGAAAGCACACCGGGGAGAAACCATATGCGTGCGATGTTTGTGGAAAATCATTTTCGCAGCAAAATCATTTGGTTGCACATAATAGGACGCACACCGGGGAGAAACCATTTGTGTGTGACGTTTGTAGCCGATCATTTtcggaaaaaaaacatttggttaCACATACTAGAACGCACACCGGGGAGAAACCATATGCGTGCGAAGTTTGTGGAAAATCATTTTCGCACAAACATAATTTGGTTACACATAATAGAACGCACACCGGGGAGAAACCATATGCGTGTAACGTTTGTGGCCGATCATTTTCGGATAAAGGAAGTTTAGTTAAACATAATAGAACGCACACAGGTGAACGACCATTCGGGTGCGGTCAGTGTGAAAAAAAGTTCTCAACAGGCCGTGACTGTAAAAGACATACACTAAGTGTTCATgccaaatga
Protein Sequence: MMSVQFRIDLMSHLSDIARFKQCEVPLARASAGICQTKGKIFSFLNFLFQYPKFLCNNKVLFVTRFLLYTSASNTHKDVSFHQFPKNETIRSIWIDSLSIKEVVKDWHRICSAHFSPDHFTFKNERKILKLGAIPKMKEVKDEVGSCETSLEHDVNLMNNSVIDVDCCPDIDVSNEYPPSTSKSPSKNTKKKKKKSKVVNSKEVMSPKKSNKCKLQTSDKEYSKNDTPQSVETEVGTYVSNNYIGEDGGKKLEFFDSLDDHTSEYRTMTDTGMYFGQYCNQTSNNAYGDKNVLTGNTPLQCDFCFKTFAYRSNLLVHRRTHTGEKPYGCDVCGLAFMMQSHLVRHQRTHTGEKPYACDVCGKSFSEEGTLVKHKRTHTGEKPYECDACGRSFSERNKLVRHKRTHPSSINAYSDKNVLTGNTPLQCDLTVTDRKTYECDVCGLTVHSLSNLIRHQRKHTGEKPYACDVCGKSFSQQNHLVAHNRTHTGEKPFVCDVCSRSFSEKKHLVTHTRTHTGEKPYACEVCGKSFSHKHNLVTHNRTHTGEKPYACNVCGRSFSDKGSLVKHNRTHTGERPFGCGQCEKKFSTGRDCKRHTLSVHAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00019163;
90% Identity: iTF_00019163;
80% Identity: iTF_00019163;