Basic Information

Insect: Acyrthosiphon pisum
Gene Symbol: -
Assembly: GCA_005508785.1
Location: NC:68540377-68542747[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 5.5 2.8e+02 2.2 1.0 1 17 89 105 89 106 0.86

2 16 7.9e-05 0.0039 17.5 4.0 1 23 120 142 120 142 0.99

3 16 3.6e-05 0.0018 18.5 2.5 1 23 148 170 148 170 0.98

4 16 0.12 5.9 7.5 5.1 1 23 176 198 176 199 0.96

5 16 4.1e-05 0.0021 18.3 4.4 1 23 204 226 204 226 0.98

6 16 1.2e-05 0.00062 20.0 2.2 1 23 232 254 232 254 0.98

7 16 0.51 26 5.5 6.6 1 23 260 282 260 282 0.96

8 16 0.0001 0.005 17.1 1.3 1 23 288 310 288 310 0.99

9 16 1.4e-05 0.00072 19.8 3.3 1 23 316 338 316 338 0.98

10 16 8.8e-06 0.00044 20.5 2.7 1 23 345 367 345 367 0.97

11 16 3.5e-06 0.00018 21.7 1.9 1 23 373 395 373 395 0.98

12 16 0.00016 0.008 16.5 0.1 1 23 401 424 401 424 0.97

13 16 2.4e-05 0.0012 19.1 1.2 1 23 424 446 424 446 0.98

14 16 3.1e-06 0.00016 21.9 1.6 1 23 454 476 454 476 0.98

15 16 7.4e-05 0.0037 17.6 1.9 1 23 482 504 482 504 0.99

16 16 1.4e-05 0.0007 19.8 0.4 1 23 510 533 510 533 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	5.5	2.8e+02	2.2	1.0	1	17	89	105	89	106	0.86
2	16	7.9e-05	0.0039	17.5	4.0	1	23	120	142	120	142	0.99
3	16	3.6e-05	0.0018	18.5	2.5	1	23	148	170	148	170	0.98
4	16	0.12	5.9	7.5	5.1	1	23	176	198	176	199	0.96
5	16	4.1e-05	0.0021	18.3	4.4	1	23	204	226	204	226	0.98
6	16	1.2e-05	0.00062	20.0	2.2	1	23	232	254	232	254	0.98
7	16	0.51	26	5.5	6.6	1	23	260	282	260	282	0.96
8	16	0.0001	0.005	17.1	1.3	1	23	288	310	288	310	0.99
9	16	1.4e-05	0.00072	19.8	3.3	1	23	316	338	316	338	0.98
10	16	8.8e-06	0.00044	20.5	2.7	1	23	345	367	345	367	0.97
11	16	3.5e-06	0.00018	21.7	1.9	1	23	373	395	373	395	0.98
12	16	0.00016	0.008	16.5	0.1	1	23	401	424	401	424	0.97
13	16	2.4e-05	0.0012	19.1	1.2	1	23	424	446	424	446	0.98
14	16	3.1e-06	0.00016	21.9	1.6	1	23	454	476	454	476	0.98
15	16	7.4e-05	0.0037	17.6	1.9	1	23	482	504	482	504	0.99
16	16	1.4e-05	0.0007	19.8	0.4	1	23	510	533	510	533	0.94

Sequence Information

Coding Sequence: ATGCAGTTGAATTCTTGTGCTCCAGTAAATCGTAAACACATTAGTTTGGATCAATCGAACACTGCAAGTTCAGTTGAccaaaaagaatataaaaatgatgaaatGTATAATTGCGCAAAATGCAGTTCATTATTTCATGATCGTCCAAGTATTATAGATCACCTAAAACCTCATATCGATCAATGTATCAACTGTTGCAAGTACATTGGTAGTCCGACATCTTGTAAATATCCTGTAAGCTTCCACCCAGGAacttcattttattttgaatgtgaAGAATGTTACAATGGATTTTATACACTCAAGAGCTTTGAAAAATATCTAAGTGTGcagagtaataaaaaaaaagacagaCCATACAAATGTGATGTTtgtctaaaaacatttatacatttataccactTTGCTGCTCATCAACGATTACATAAAGGTGAGAGACCATACCAGTGTAACATTTGTGATAAACGTTTCCACgccaaatttaatttagaaGCTCACTTGTTttcacataaaattataaagggATATAAATGCTTGTTGTGTTCGAAAAAGTTCCTTAAATTGAGATATTTCAAAATCCATATGTTATCTCATCATGACTCATCCAAACATAAATGTAACATGTGTGGAAAAGaatttgtatcattgaattctttGCATAGACATCAGGATCGCCATCCCGGATACAGACCATACAAATGTATTGAATGTGGCAAGTCATTTTCAATGAATAAATCTcttaaacaacatttaaaaaggCATGAAGGTTTAAACCCATATCAATGTACTCTATGTGACGAAAGTTGTAGcacttattttgattttgagtgCCATAAAAGACTACACAATGGTGAAAAGCCTTATAAATGTGATATCTGTGGAGATCAGTTTACTCAATTAACTGATTGGAGAAgacataaaaaaacacattttgaatataaaaattttgaatgcaATGAGTGCCATAAAAAGTTTCCTAGTAAAACTGGTGTCAAAAAACATTTGCAAACAcactttgaaaaaattaaaaaacataaatgcaAAGTTTGTAACAAAAATTTTTCGCAAAGCAATCAATTGAATGTACATGAACAAATTCATAAAGACTTTAAACCATATGTTTGTAACATATGTAAAAAGAGTTTTATTTCTCGTCAGAATTATACTAATCACTTAAATCAACACACAGGTGCCAGACCATTCGTTTGTGATATATGCGGAAAAACGTATCCAGCAATTGTATCTCTGAATAggcataaaaaaatcaatcataCATGTGATATTTGTAGTAAGTTCTACAGGGACCCCAAAGAACTCAAGGTTCACAAGATTACTCATCAAGAATTTAACCTGAGGCAGTATGCGTGCAAATTGTGtgacaaaacatttaaatatcaacGAGCTTTGGACAAACATCAATTAACTCATCTAGTCGAAAGATCGTTTAAGTGCGACCTTTGTCCTAagtcttatataaaaaataatgttctgaAAAATCATAGAAGAAAACACACCGGTGAAAGACCATATAAATGCAAATTATGTAATAAGACATATCCCCAAATAAGTTCACTAACACGACATGAAGCCATTGTACACAACAAATAA
Protein Sequence: MQLNSCAPVNRKHISLDQSNTASSVDQKEYKNDEMYNCAKCSSLFHDRPSIIDHLKPHIDQCINCCKYIGSPTSCKYPVSFHPGTSFYFECEECYNGFYTLKSFEKYLSVQSNKKKDRPYKCDVCLKTFIHLYHFAAHQRLHKGERPYQCNICDKRFHAKFNLEAHLFSHKIIKGYKCLLCSKKFLKLRYFKIHMLSHHDSSKHKCNMCGKEFVSLNSLHRHQDRHPGYRPYKCIECGKSFSMNKSLKQHLKRHEGLNPYQCTLCDESCSTYFDFECHKRLHNGEKPYKCDICGDQFTQLTDWRRHKKTHFEYKNFECNECHKKFPSKTGVKKHLQTHFEKIKKHKCKVCNKNFSQSNQLNVHEQIHKDFKPYVCNICKKSFISRQNYTNHLNQHTGARPFVCDICGKTYPAIVSLNRHKKINHTCDICSKFYRDPKELKVHKITHQEFNLRQYACKLCDKTFKYQRALDKHQLTHLVERSFKCDLCPKSYIKNNVLKNHRRKHTGERPYKCKLCNKTYPQISSLTRHEAIVHNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -