Apis007220.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Acyrthosiphon pisum
Gene Symbol
ZNF280A
Assembly
GCA_005508785.1
Location
NC:109265554-109279971[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.23 11 6.6 1.4 5 21 162 178 161 180 0.91
2 22 6.8e-06 0.00034 20.8 0.5 3 23 189 209 188 209 0.97
3 22 7.1e-06 0.00036 20.8 2.3 1 23 217 239 217 239 0.96
4 22 8.6e-06 0.00043 20.5 1.2 2 23 253 275 252 275 0.96
5 22 3.6e-06 0.00018 21.7 1.5 1 23 276 298 276 298 0.97
6 22 2.5e-06 0.00012 22.2 1.8 1 23 306 328 306 328 0.97
7 22 7.5e-05 0.0038 17.5 0.3 1 23 334 356 334 356 0.95
8 22 9.5e-07 4.8e-05 23.5 3.6 1 23 362 384 362 384 0.98
9 22 1.1e-05 0.00055 20.2 4.7 1 23 390 412 390 412 0.99
10 22 6e-07 3e-05 24.1 2.6 2 23 418 439 417 439 0.97
11 22 1.7e-05 0.00086 19.5 3.0 2 23 445 467 444 467 0.95
12 22 1.5e-05 0.00075 19.7 0.6 1 23 473 495 473 495 0.98
13 22 8.4e-06 0.00042 20.5 0.9 1 23 501 523 501 523 0.98
14 22 4.6e-07 2.3e-05 24.5 2.6 1 23 529 551 529 551 0.99
15 22 7.8e-07 3.9e-05 23.8 2.2 1 23 557 579 557 579 0.99
16 22 0.00023 0.011 16.0 0.4 1 23 585 607 585 607 0.98
17 22 2.7e-06 0.00013 22.1 2.1 1 23 613 635 613 635 0.99
18 22 0.00022 0.011 16.1 1.7 1 23 641 663 641 663 0.98
19 22 5.8e-07 2.9e-05 24.2 1.6 1 23 669 691 669 691 0.99
20 22 1.3e-08 6.5e-07 29.4 1.7 1 23 697 719 697 719 0.99
21 22 2.6e-06 0.00013 22.1 0.5 1 23 725 747 725 747 0.99
22 22 1.4e-05 0.00068 19.9 1.6 1 23 753 776 753 776 0.98

Sequence Information

Coding Sequence
ATGGAACCATTAAGAACACCTATTAAACATCCTGCGATTAACTCCAAGTATGATTATATATTGCACAGTTCCAGAGTGCTGACAATTCCATGTGTCAGATGTGATGATCAAGTAtacaataaagttattaaacagGAAACTATTGATGAAATAGACTATACTAATGATAACCAATTATTCCATATAGGAACTGTTTTTAAAACTGAAGAAGAAATAAACACAATGgataccaaaataaaaactgaaaaagaaataaacacaattgataccaaaataaaaagtgaaaaagaAATGAACACAATGgataccaaaataaaaactgaaaaagaaaTGAACACAAttgaaaccaaaattaaaactgaaaaagatTTTATAGAACTTAATGAATTTGAAGGAACAGTTTTGACCGATAGTTACTCTTCAGAAATCATTACTCATATGAACAAGAGATCTAACTTAGAGAACAAGCATTTAACCAGTCAAGTGTGTGGTGAAAAATTTTCTAATTCGAATAAATTTCAAATCCATAAGAAATGTCATACTAAGAgtgatcattataataattgtaacatttGCAATGTATCATTTGATTCAAACGAACTTTTGACAAGACACATGAAGATTCATTCCAGTGAAAGAGAAAGGCCTTTCATATGTGCcatttgtaataaaacatattataccaaGTCACATTTGAAATCACACATACTGCTTCATACTAAAAAAACTACATATAACTTAAAGTACAAGCATTTAACCTGTAAAGTGTGTGGCAAAGTATTTtctaattcaaataaatttcaaatccaTACTAAAAGTGATCATCATAATTGCAACATCTGCAATGTATCATTTGATTCTAAAGGACTTTTGACAAGACACATGAAGATTCATTCCAGTGAAAGAGAAAAAACTTTCATCTGTGCCAtttgtaataaatcatattatactaaatcacATTTGAAATCACACATACTGGTTCATACTAAAAATACCCGATATAAATGCGATATATGTGATGAAGGATTTACTCAAAAGGTTTATTTAGAACTCCATAACACGATACATACTGGAGAACCTCCATTTAAATGTGACATATGTGACAAAGGATTTAATCataattcaagtttaaaaacCCATAGAAGGCTTCATACTGGAGAAAAGCCTTATAAATGTGATACctgtgataaaaaatttaatcaagcAGTACATTTGAAATACCATACGAAAACTCATACTAAAGATCCGACTGAATGTAACatatgtgataaaatattttcgcaTGCTAGATATCTAAAACGCCATATGAAAAGTCATACTAGAGATCCGATCAAATGTAACAtctgtgataaaatattttcgcaTGCTAGATATTTGAAACGCCATACGACGAGAACACATACTAGAGAAAAATCGTTTAAATGTGACATCTgtgataaagtatattataaagcatACGCTTTAAAAATCCATAAAGAGACACATACTGGAGAAAAGCCATTTAAGTGTGATGTCTGTGATAGACGTTTTtatcaatcaaattatttaaatatccatGCGAGGATACATACAGGAGAGAGACCATATAAATGTGATATAtgcgataaattatttaaatattcatcaaatttaaaaacccACAGAATGACACATACGGGAGTAAAGTCTTATAAATGCCATGTCTGCGATAAAGTGTATTCTCGATTTGAAGGTTTAAAAAACCATATAATGACACATACTGGAGAAATGCCTTTCAAATGTGATATCTGTGACAAACGGTTTGTTATTGCATCAAGATTAGATACCCATAGAAATATTCatactgataaaaaaatattcaaatgttaCATCTGCAAAAAAGGGTTCAATcaattagtaaatttaaaagttcataGACGGACACATACCttggaaaagttatttaaatgtgACATCTGTGATAGTATGTTTGCTCATgcaaatactttaaaagttcATAAAATGAAACATACTGGAGAGAAGCCATTTAAATGTGACGTCTGTGATAAAACATTTTCTCAAACCGGGACTTTAACAATCCATAAGAGGACACATACTGGAGAAAAGTTGTACACATGCAATATTTGTGGTAAATCGTTTTCTCGAgcagaacatttaaaaatccatACAAGGATACATACCGGAGAAAGACCTTATAAATGCGAAATATGTGATAGAGGTTTTAATGGATCAggagatttaaaaaaacataacaggACACACACTGGGGAGAAACCATATAAATGCGTCATCTGTGATAAAAGATTTTCTCTATCAGGAAGTTTCAAAGGCCATATGAGGAAACGTCATGCCGGGGAAGTCGTATAG
Protein Sequence
MEPLRTPIKHPAINSKYDYILHSSRVLTIPCVRCDDQVYNKVIKQETIDEIDYTNDNQLFHIGTVFKTEEEINTMDTKIKTEKEINTIDTKIKSEKEMNTMDTKIKTEKEMNTIETKIKTEKDFIELNEFEGTVLTDSYSSEIITHMNKRSNLENKHLTSQVCGEKFSNSNKFQIHKKCHTKSDHYNNCNICNVSFDSNELLTRHMKIHSSERERPFICAICNKTYYTKSHLKSHILLHTKKTTYNLKYKHLTCKVCGKVFSNSNKFQIHTKSDHHNCNICNVSFDSKGLLTRHMKIHSSEREKTFICAICNKSYYTKSHLKSHILVHTKNTRYKCDICDEGFTQKVYLELHNTIHTGEPPFKCDICDKGFNHNSSLKTHRRLHTGEKPYKCDTCDKKFNQAVHLKYHTKTHTKDPTECNICDKIFSHARYLKRHMKSHTRDPIKCNICDKIFSHARYLKRHTTRTHTREKSFKCDICDKVYYKAYALKIHKETHTGEKPFKCDVCDRRFYQSNYLNIHARIHTGERPYKCDICDKLFKYSSNLKTHRMTHTGVKSYKCHVCDKVYSRFEGLKNHIMTHTGEMPFKCDICDKRFVIASRLDTHRNIHTDKKIFKCYICKKGFNQLVNLKVHRRTHTLEKLFKCDICDSMFAHANTLKVHKMKHTGEKPFKCDVCDKTFSQTGTLTIHKRTHTGEKLYTCNICGKSFSRAEHLKIHTRIHTGERPYKCEICDRGFNGSGDLKKHNRTHTGEKPYKCVICDKRFSLSGSFKGHMRKRHAGEVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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