Apis009677.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Acyrthosiphon pisum
Gene Symbol
-
Assembly
GCA_005508785.1
Location
NC:23570873-23628472[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 2.5 1.2e+02 3.3 0.2 5 21 111 126 110 127 0.87
2 25 7.9e-05 0.0039 17.5 0.1 5 23 138 156 137 156 0.96
3 25 5.9e-07 3e-05 24.1 0.5 1 23 162 184 162 184 0.99
4 25 2.1e-05 0.0011 19.3 1.4 1 23 190 212 190 212 0.98
5 25 3.2e-07 1.6e-05 25.0 2.3 1 23 218 240 218 240 0.99
6 25 3.7e-06 0.00019 21.6 2.4 1 23 246 268 246 268 0.98
7 25 1.1e-05 0.00054 20.2 2.3 1 23 274 296 274 296 0.97
8 25 5.8e-06 0.00029 21.0 3.6 1 23 302 324 302 324 0.99
9 25 1.4e-07 7.2e-06 26.1 1.2 1 21 330 350 330 351 0.94
10 25 2.8e-06 0.00014 22.0 3.9 1 23 358 380 358 380 0.98
11 25 1.7e-06 8.5e-05 22.7 1.4 1 23 386 408 386 408 0.98
12 25 0.0013 0.063 13.7 2.8 1 23 414 436 414 436 0.98
13 25 9.1e-07 4.6e-05 23.6 1.0 1 23 442 464 442 464 0.98
14 25 2.8e-06 0.00014 22.0 5.0 1 23 470 492 470 492 0.98
15 25 2e-05 0.001 19.3 1.8 1 23 498 520 498 520 0.98
16 25 0.00012 0.0061 16.9 2.1 1 23 526 548 526 548 0.99
17 25 1.6e-06 7.9e-05 22.8 3.1 1 23 554 576 554 576 0.99
18 25 4.1e-06 0.0002 21.5 1.6 1 23 582 604 582 604 0.98
19 25 2.8e-06 0.00014 22.0 3.9 1 23 610 632 610 632 0.98
20 25 1.7e-06 8.5e-05 22.7 1.4 1 23 638 660 638 660 0.98
21 25 0.00012 0.0061 16.9 2.1 1 23 666 688 666 688 0.99
22 25 1.6e-06 7.9e-05 22.8 3.1 1 23 694 716 694 716 0.99
23 25 4.1e-06 0.0002 21.5 1.6 1 23 722 744 722 744 0.98
24 25 4.9e-07 2.4e-05 24.4 1.7 1 23 750 772 750 772 0.99
25 25 3.7e-06 0.00019 21.6 1.4 1 20 778 797 778 798 0.96

Sequence Information

Coding Sequence
ATGGAACCATTAGGAATAACTACTGATGATTGCGGGATAAACTCCAAgtataaagATATACTACACAGGTCCAGTATGTTGTCTATACCACTCATCAGGTGTGATGATCCTGTATTTAATGGAATTATAAAAGAGGAAATTACTGAAGAAATAGACCATAGATCATTTCAAATAGgaactgAAACTGAAGACAAAATTAACACAAttgataaagaaataaaaactgaaGTAAATTGTATTGACTGTTTTGCATTTGAAGGAACAGCTTTAAGCGAAAGCAATTCTGCTGATATCATAACTAACTGCCTAAGGAAAAATCCATTGGATAATAACTGTGATAAAATGTCTACAGCATCCAAATTAAGGAAGCATACAAGTACGCAAACCGGTGAAAAAACGTATGAATATGAAGACTGTGATCAAGCTTTTTCCCGAAAATCACTTTTAACGATCCATACAAGGATACACGCCGGTGAAAAACCGTATAAATGTGACGACTGTGATAAAGCGTTTTCATGGAAATCACTTTTAACAGAACATATAAGGACACATACCGGCGAAAAACCGTACATATGTAATAGCTGTGAGCAAGCGTTTTCTTATAAATCAAGTTTAATAAGACATACAAAGAGACATACCGGCGAAAAACCGTTTAAGTGTTATATCTGTGATCAAGCATTTTCCCGGAAATCACTTTTAACGACGCATACAAGGACACATACCGGCGAAAAACCGTACATATGTAATACCTGTGATCAAGCATTTTCTCAttattcaagtttaataaatcATACAAGGACACATACCGGTGAAAAACCGTTTAAATGTGATACCTGTGATCAAGCGTTTTCGCGGaaatcaagtttaaaatatcatacaagTTTACACACCGGTGAAAAGCCGTTTAGATGTAATGACTGTGATAAAACGTTCTCTCGGATATCagatttaaaatgtcatataaggatgcacactggtgaaaaaccctataaatgtaataactgtGATAAAGCGTTTTCTGATAAATCAAATTTGACTAGGCATACAACGACACGTACCGGCGAAAAGCTGTTTAAATGTGATGACTGTGATAAAGCGTTCTCtcagaaatcaaatttaaaatgtcatacaaggatacacactggtgaaaaactgtttaaatgtaataactgtGATAAAGCGTTTTCTCGTAAACCAAGTTTAATAAGCCATACAACGACACATACCGGCGAAAAACCGTTTAAATGTGATACATGTCATCGAGCTTTTGCTcttaaaaatactttagaaatgCATACAACGacacacactggtgaaaaactgtttaaatgtaataactgtGATGAAGCGTTTTCTCGTAAATCAAGTTTAATAATCCATACAACGACACATACCGGCGAAAAACCGTTTAAATGTGATGACTGTGATAAAACGTTCTCtcagaaatcaaatttaaaatgtcatacaaggatacacactggtgaaaaactgtttaaatgtaataactgtGATAAAGCGTTTTCTCGTAAACTAAGTTTAATAAGCCATTCAACGACACATACCGGCGAAAAACCGTTTAAATGTGATACATGTCATCGAGCTTTTGCTCTCAAAAAAACTTTAGAAATTCATACAAGGATACATACCAGCGAAAAACCATACAAATGTAATAGCTGTGAGCGAGCGTTTTCTCAGAAATCACATTTAACGGTCCATACAAGGATACATACCGGTGAAAAACCGTACATATGTAATACCTGTGATCAAGCGTTTTCTTTAAAATCACATTTAATAGTGCATACAAGGACACATACCGGCGAAAAGCCGTTCAAATGTGATGACTGTGATAAAGCGTTCTCtcagaaatcaaatttaaaatgtcatacaaggatacacactggtgaaaaactgtttaaatgtaataactgtGATAAAGCGTTTTCTCGTAAACCAAGTTTAATAAGCCATACAACGACACATACCGGCGAAAAACCGTTTAAATGTGATACATGTCATCGAGCTTTTGCTCTCAAAAAAACTTTAGAAATTCATACAAGGATACATACCAGTGAAAAACCGTACAAATGTAATAGCTGTGAGCGAGCGTTTTCTCAGAAATCACATTTAACGGTCCATACAAGGATACATACCGGTGAAAAACCGTACATATGTAATACCTGTGATCAAGCGTTTTCTTTAAAATCACATTTAATAGTGCATACAAGGACACATACCGGCGAAAAGCCGTTCAAATGTGATAGCTGTGATCAAGCGTTTTCTcagagttcaaatttaataagaCATAAGAAAACACATACCGGCGAAAATCCGTATAAATGTGATAACTGTGATCAAACGTTTTCTCGGAAATCACATTTAACGATACATACCGGCGAAAAGCTGTTTAAAAGTGATACATGTTATTGa
Protein Sequence
MEPLGITTDDCGINSKYKDILHRSSMLSIPLIRCDDPVFNGIIKEEITEEIDHRSFQIGTETEDKINTIDKEIKTEVNCIDCFAFEGTALSESNSADIITNCLRKNPLDNNCDKMSTASKLRKHTSTQTGEKTYEYEDCDQAFSRKSLLTIHTRIHAGEKPYKCDDCDKAFSWKSLLTEHIRTHTGEKPYICNSCEQAFSYKSSLIRHTKRHTGEKPFKCYICDQAFSRKSLLTTHTRTHTGEKPYICNTCDQAFSHYSSLINHTRTHTGEKPFKCDTCDQAFSRKSSLKYHTSLHTGEKPFRCNDCDKTFSRISDLKCHIRMHTGEKPYKCNNCDKAFSDKSNLTRHTTTRTGEKLFKCDDCDKAFSQKSNLKCHTRIHTGEKLFKCNNCDKAFSRKPSLISHTTTHTGEKPFKCDTCHRAFALKNTLEMHTTTHTGEKLFKCNNCDEAFSRKSSLIIHTTTHTGEKPFKCDDCDKTFSQKSNLKCHTRIHTGEKLFKCNNCDKAFSRKLSLISHSTTHTGEKPFKCDTCHRAFALKKTLEIHTRIHTSEKPYKCNSCERAFSQKSHLTVHTRIHTGEKPYICNTCDQAFSLKSHLIVHTRTHTGEKPFKCDDCDKAFSQKSNLKCHTRIHTGEKLFKCNNCDKAFSRKPSLISHTTTHTGEKPFKCDTCHRAFALKKTLEIHTRIHTSEKPYKCNSCERAFSQKSHLTVHTRIHTGEKPYICNTCDQAFSLKSHLIVHTRTHTGEKPFKCDSCDQAFSQSSNLIRHKKTHTGENPYKCDNCDQTFSRKSHLTIHTGEKLFKSDTCY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-