Basic Information

Insect: Acyrthosiphon pisum
Gene Symbol: -
Assembly: GCA_005508785.1
Location: NC:130458625-130463863[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 42 3.4e-06 0.00017 21.8 0.5 1 23 31 53 31 53 0.96

2 42 6.7e-07 3.3e-05 24.0 0.9 1 23 59 81 59 81 0.98

3 42 1e-06 5.1e-05 23.4 3.0 1 23 87 109 87 109 0.98

4 42 8.5e-07 4.3e-05 23.7 0.6 1 23 115 137 115 137 0.98

5 42 1.2e-05 0.00062 20.0 0.3 1 23 143 165 143 165 0.98

6 42 7.6e-06 0.00038 20.7 2.7 1 23 171 193 171 193 0.98

7 42 2.2e-06 0.00011 22.4 2.8 1 23 199 221 199 221 0.98

8 42 3.4e-06 0.00017 21.7 2.8 1 23 227 249 227 249 0.98

9 42 1.1e-06 5.6e-05 23.3 1.3 1 23 255 277 255 277 0.98

10 42 8.5e-07 4.3e-05 23.7 0.6 1 23 283 305 283 305 0.98

11 42 1.2e-05 0.00062 20.0 0.3 1 23 311 333 311 333 0.98

12 42 2.6e-05 0.0013 19.0 0.7 1 23 339 361 339 361 0.98

13 42 2.6e-05 0.0013 19.0 0.7 1 23 367 389 367 389 0.98

14 42 1.2e-05 0.00062 20.0 0.3 1 23 395 417 395 417 0.98

15 42 8.5e-07 4.3e-05 23.7 0.6 1 23 423 445 423 445 0.98

16 42 1.2e-05 0.00062 20.0 0.3 1 23 451 473 451 473 0.98

17 42 2.6e-05 0.0013 19.0 0.7 1 23 479 501 479 501 0.98

18 42 1.2e-05 0.00062 20.0 0.3 1 23 507 529 507 529 0.98

19 42 8.5e-07 4.3e-05 23.7 0.6 1 23 535 557 535 557 0.98

20 42 1.2e-05 0.00062 20.0 0.3 1 23 563 585 563 585 0.98

21 42 8.5e-07 4.3e-05 23.7 0.6 1 23 591 613 591 613 0.98

22 42 1.2e-05 0.00062 20.0 0.3 1 23 619 641 619 641 0.98

23 42 7.6e-06 0.00038 20.7 2.7 1 23 647 669 647 669 0.98

24 42 2.2e-06 0.00011 22.4 2.8 1 23 675 697 675 697 0.98

25 42 3.4e-06 0.00017 21.7 2.8 1 23 703 725 703 725 0.98

26 42 6e-07 3e-05 24.1 1.1 1 23 731 753 731 753 0.98

27 42 8.5e-07 4.3e-05 23.7 0.6 1 23 759 781 759 781 0.98

28 42 1.2e-05 0.00062 20.0 0.3 1 23 787 809 787 809 0.98

29 42 2.6e-05 0.0013 19.0 0.7 1 23 815 837 815 837 0.98

30 42 1.2e-05 0.00062 20.0 0.3 1 23 843 865 843 865 0.98

31 42 2.6e-05 0.0013 19.0 0.7 1 23 871 893 871 893 0.98

32 42 1.2e-05 0.00062 20.0 0.3 1 23 899 921 899 921 0.98

33 42 5.3e-07 2.7e-05 24.3 2.6 1 23 927 949 927 949 0.98

34 42 8.5e-07 4.3e-05 23.7 0.6 1 23 955 977 955 977 0.98

35 42 9.1e-06 0.00045 20.4 0.5 1 23 983 1005 983 1005 0.98

36 42 2.6e-05 0.0013 19.0 0.7 1 23 1011 1033 1011 1033 0.98

37 42 1.2e-05 0.00062 20.0 0.3 1 23 1039 1061 1039 1061 0.98

38 42 3.9e-07 2e-05 24.7 0.5 1 23 1067 1089 1067 1089 0.98

39 42 2.2e-05 0.0011 19.2 0.8 1 23 1095 1117 1095 1117 0.98

40 42 0.0053 0.27 11.7 0.5 1 17 1123 1139 1123 1145 0.92

41 42 9.6e-06 0.00048 20.3 0.7 1 23 1151 1173 1151 1173 0.99

42 42 5.8 2.9e+02 2.2 0.1 1 9 1179 1187 1179 1191 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	42	3.4e-06	0.00017	21.8	0.5	1	23	31	53	31	53	0.96
2	42	6.7e-07	3.3e-05	24.0	0.9	1	23	59	81	59	81	0.98
3	42	1e-06	5.1e-05	23.4	3.0	1	23	87	109	87	109	0.98
4	42	8.5e-07	4.3e-05	23.7	0.6	1	23	115	137	115	137	0.98
5	42	1.2e-05	0.00062	20.0	0.3	1	23	143	165	143	165	0.98
6	42	7.6e-06	0.00038	20.7	2.7	1	23	171	193	171	193	0.98
7	42	2.2e-06	0.00011	22.4	2.8	1	23	199	221	199	221	0.98
8	42	3.4e-06	0.00017	21.7	2.8	1	23	227	249	227	249	0.98
9	42	1.1e-06	5.6e-05	23.3	1.3	1	23	255	277	255	277	0.98
10	42	8.5e-07	4.3e-05	23.7	0.6	1	23	283	305	283	305	0.98
11	42	1.2e-05	0.00062	20.0	0.3	1	23	311	333	311	333	0.98
12	42	2.6e-05	0.0013	19.0	0.7	1	23	339	361	339	361	0.98
13	42	2.6e-05	0.0013	19.0	0.7	1	23	367	389	367	389	0.98
14	42	1.2e-05	0.00062	20.0	0.3	1	23	395	417	395	417	0.98
15	42	8.5e-07	4.3e-05	23.7	0.6	1	23	423	445	423	445	0.98
16	42	1.2e-05	0.00062	20.0	0.3	1	23	451	473	451	473	0.98
17	42	2.6e-05	0.0013	19.0	0.7	1	23	479	501	479	501	0.98
18	42	1.2e-05	0.00062	20.0	0.3	1	23	507	529	507	529	0.98
19	42	8.5e-07	4.3e-05	23.7	0.6	1	23	535	557	535	557	0.98
20	42	1.2e-05	0.00062	20.0	0.3	1	23	563	585	563	585	0.98
21	42	8.5e-07	4.3e-05	23.7	0.6	1	23	591	613	591	613	0.98
22	42	1.2e-05	0.00062	20.0	0.3	1	23	619	641	619	641	0.98
23	42	7.6e-06	0.00038	20.7	2.7	1	23	647	669	647	669	0.98
24	42	2.2e-06	0.00011	22.4	2.8	1	23	675	697	675	697	0.98
25	42	3.4e-06	0.00017	21.7	2.8	1	23	703	725	703	725	0.98
26	42	6e-07	3e-05	24.1	1.1	1	23	731	753	731	753	0.98
27	42	8.5e-07	4.3e-05	23.7	0.6	1	23	759	781	759	781	0.98
28	42	1.2e-05	0.00062	20.0	0.3	1	23	787	809	787	809	0.98
29	42	2.6e-05	0.0013	19.0	0.7	1	23	815	837	815	837	0.98
30	42	1.2e-05	0.00062	20.0	0.3	1	23	843	865	843	865	0.98
31	42	2.6e-05	0.0013	19.0	0.7	1	23	871	893	871	893	0.98
32	42	1.2e-05	0.00062	20.0	0.3	1	23	899	921	899	921	0.98
33	42	5.3e-07	2.7e-05	24.3	2.6	1	23	927	949	927	949	0.98
34	42	8.5e-07	4.3e-05	23.7	0.6	1	23	955	977	955	977	0.98
35	42	9.1e-06	0.00045	20.4	0.5	1	23	983	1005	983	1005	0.98
36	42	2.6e-05	0.0013	19.0	0.7	1	23	1011	1033	1011	1033	0.98
37	42	1.2e-05	0.00062	20.0	0.3	1	23	1039	1061	1039	1061	0.98
38	42	3.9e-07	2e-05	24.7	0.5	1	23	1067	1089	1067	1089	0.98
39	42	2.2e-05	0.0011	19.2	0.8	1	23	1095	1117	1095	1117	0.98
40	42	0.0053	0.27	11.7	0.5	1	17	1123	1139	1123	1145	0.92
41	42	9.6e-06	0.00048	20.3	0.7	1	23	1151	1173	1151	1173	0.99
42	42	5.8	2.9e+02	2.2	0.1	1	9	1179	1187	1179	1191	0.85

Sequence Information

Coding Sequence: atgaaaaacACTTacgtgttaaataaattatttataaacaattgtaaACTGACGACACACCGGCGCATCGGACAAATGGAGAATAAACCTTACCTGTGCGATGTATGTGGAAAGTCGTTCTCTGTGAGTAGCAGATTGATGGtacatcgacgcacgcacaccGTCGAAAGACCATACGCATGCAATGTATGTGACAAGTATTTCACTCAAAGTGGACAATTGACAGtacatcgacgcacgcacactAGCGAAAGACCATACGCATGCAATGTATGTGACAAGTATTTCAATCAAAGTAGCCATTTGACAGtacatcgacgcacgcacactggcgaaaaaccaTACGCATGTGATGTATGTGACAAGTATTTCACTCAAAGTGGCCAATTGACGGtacatcgacgcacgcacaccGGTGAAAAACCATACGCATGTGATGTATGTGACAAGTCGTTCAGTGAAGGTAGCAAATTGATGGtacatcgacgcacgcacaccGGCGAAAAACCATACGCATGCGATGTATGTGAAAAGTCGTTCTCTGTGAGACACAATTTGACATAtcatcgacgcacgcacactggcgaaaaaccaTACGCATGCGATGTATGTGACAAGTCGTTCTCTGTGAGACACAATTTGACATAtcatcgacgcacgcacaccGGAGAAAAACCATACGCATGCGATGTATGTGACAAGTCATTCTCTGTGAGATGCAATTTGACATCtcatcgacgcacgcacaccGGCGAAAAACCATACGCATGCAATTTATGTGACAAGTATTTCACTCAAAGTGGTCAATTGAAGGtacatcgacgcacgcacactggtgaaaaaccataCGCATGTGATGTATGTGACAAGTATTTCACTCAAAGTGGCCAATTGACGGtacatcgacgcacgcacaccGGTGAAAAACCATACGCATGTGATGTATGTGACAAGTCGTTCAGTGAAGGTAGCAAATTGATGGtacatcgacgcacgcacactggcgaaaaaccatacgcatgcgatgtatgcgacaagtcgttgTATGTGAGTAGCAATTTGACATAtcatcgacgcacgcacaccggcgaaaaaccatacgcatgtgatgtatgcgacaagtcgttgTATGTGAGTAGCAATTTGACATAtcatcgacgcacgcacaccGGCGAAAAACCATACGCATGTGATGTATGTGACAAGTCGTTCAGTGAAGGTAGCAAATTGATGGtacatcgacgcacgcacactggcgaaaaaccaTACGCATGTGATGTATGTGACAAGTATTTCACTCAAAGTGGCCAATTGACGGtacatcgacgcacgcacaccGGTGAAAAACCATACGCATGTGATGTATGTGACAAGTCGTTCAGTGAAGGTAGCAAATTGATGGtacatcgacgcacgcacactggcgaaaaaccaTACGCATGCGATGTATGTGACAAGTCGTTGTATGTGAGTAGCAATTTGACATAtcatcgacgcacgcacaccGGCGAAAAACCATATGCATGTGATGTATGTGACAAGTCGTTCAGCGAAGGTAGCAAATTGATGGtacatcgacgcacgcacaccggcgaaaaaccatacgcatgcgatgtatgcgacaagtATTTCACTCAAAGTGGCCAATTGACAGtacatcgacgcacgcacaccGGTGAAAAACCATACGCATGTGATGTATGTGACAAGTCGTTCAGTGAAGGTAGCAAATTGATGGtacatcgacgcacgcacactggcgaaaaaccatacgcatgcgatgtatgcgacaagtATTTCACTCAAAGTGGCCAATTGACAGtacatcgacgcacgcacaccGGTGAAAAACCATACGCATGTGATGTATGTGACAAGTCGTTCAGTGAAGGTAGCAAATTGATGGtacatcgacgcacgcacaccGGCGAAAAACCATACGCATGCGATGTATGTGAAAAGTCGTTCTCTGTGAGACACAATTTAACATAtcatcgacgcacgcacactggcgaaaaaccaTACGCATGCGATGTATGTGACAAGTCGTTCTCTGTGAGACACAATTTGACATAtcatcgacgcacgcacaccGGAGAAAAACCATACGCATGCGATGTATGTGACAAGTCGTTCTCTGTGAGATGCAATTTGACATCtcatcgacgcacgcacaccGGCGAAAAACCATACGCATGCAATGTATGTGACAAGTATTTCACTCAAAGTGGCCAATTGAAGGtacatcgacgcacgcacactggtgaaaaaccataCGCATGTGATGTATGTGACAAGTATTTCACTCAAAGTGGCCAATTGACGGtacatcgacgcacgcacaTCGGTGAAAAACCATACGCATGTGATGTATGTGACAAGTCGTTCAGTGAAGGTAGCAAATTGATGGtacatcgacgcacgcacactggcgaaaaaccatacgcatgtgatgtatgcgacaagtcgttgTATGTGAGTAGCAATTTGACATAtcatcgacgcacgcacaccGGCGAAAAACCATACGCATGTGATGTATGTGACAAGTCGTTCAGCGAAGGTAGCAAATTGATGGtacatcgacgcacgcacaccggcgaaaaaccatacgcatgcgatgtatgcgacaagtcgttgTATGTGAGTAGCAATTTGACATAtcatcgacgcacgcacaccGGCGAAAAACCATACGCATGTGATGTATGTGACAAGTCGTTCAGTGAAGGTAGCAAATTGATGGtacatcgacgcacgcacactggcgaaaaaccaTACGCATGTGATGTATGTGACAAGTATTTCACTCAAAGTAGCCATTTGACAGtacatcgacgcacgcacactggcgaaaaaccaTACGCATGTGATGTATGTGACAAGTATTTCACTCAAAGTGGCCAATTGACGGtacatcgacgcacgcacaACGGTGAAAAACCATACGCATGTAATGTATGTGACAAGTCGTTCAGTGAAGGTAGCAAATTGATGGtacatcgacgcacgcacactggtgaaaaaccataCGCATGCGATGTATGTGACAAGTCGTTGTATGTGAGTAGCAATTTGACATAtcatcgacgcacgcacaccGGCGAAAAACCATATGCATGTGATGTATGTGACAAGTCGTTCAGCGAAGGTAGCAAATTGATGGtacatcgacgcacgcacaccGGCGAAAAACCATACGCATGCGATGTATGCGGCAAGTATTTCACTCAAAGTGGCCAATTGACAGtacatcgacgcacgcacaccggcgaaaaaccatacgcatgcgatgtatgcgacaagtcgttgTATGTGAGTAGCAATTTGAAATAtcatcgacgcacgcacactggtgaaaaaccatacgcatgtgatgtatgcgacaagTATTTCACTCAAAGTGGCCATTTGACGGTGTatcgacgcacgcacactggcgaaaaaccaTACACGTGTAGtgtatgcgacaagtcgttcagTGAAGGTAGCAAATTGATGGTACATCGACGCATGCACACCGGCGAAAAACCATACGCATGCGATGTATGTGACAAGTCGATTGATCAAAGATTAATTCATTATCCAagtgtcataatattaaaagacgATTAa
Protein Sequence: MKNTYVLNKLFINNCKLTTHRRIGQMENKPYLCDVCGKSFSVSSRLMVHRRTHTVERPYACNVCDKYFTQSGQLTVHRRTHTSERPYACNVCDKYFNQSSHLTVHRRTHTGEKPYACDVCDKYFTQSGQLTVHRRTHTGEKPYACDVCDKSFSEGSKLMVHRRTHTGEKPYACDVCEKSFSVRHNLTYHRRTHTGEKPYACDVCDKSFSVRHNLTYHRRTHTGEKPYACDVCDKSFSVRCNLTSHRRTHTGEKPYACNLCDKYFTQSGQLKVHRRTHTGEKPYACDVCDKYFTQSGQLTVHRRTHTGEKPYACDVCDKSFSEGSKLMVHRRTHTGEKPYACDVCDKSLYVSSNLTYHRRTHTGEKPYACDVCDKSLYVSSNLTYHRRTHTGEKPYACDVCDKSFSEGSKLMVHRRTHTGEKPYACDVCDKYFTQSGQLTVHRRTHTGEKPYACDVCDKSFSEGSKLMVHRRTHTGEKPYACDVCDKSLYVSSNLTYHRRTHTGEKPYACDVCDKSFSEGSKLMVHRRTHTGEKPYACDVCDKYFTQSGQLTVHRRTHTGEKPYACDVCDKSFSEGSKLMVHRRTHTGEKPYACDVCDKYFTQSGQLTVHRRTHTGEKPYACDVCDKSFSEGSKLMVHRRTHTGEKPYACDVCEKSFSVRHNLTYHRRTHTGEKPYACDVCDKSFSVRHNLTYHRRTHTGEKPYACDVCDKSFSVRCNLTSHRRTHTGEKPYACNVCDKYFTQSGQLKVHRRTHTGEKPYACDVCDKYFTQSGQLTVHRRTHIGEKPYACDVCDKSFSEGSKLMVHRRTHTGEKPYACDVCDKSLYVSSNLTYHRRTHTGEKPYACDVCDKSFSEGSKLMVHRRTHTGEKPYACDVCDKSLYVSSNLTYHRRTHTGEKPYACDVCDKSFSEGSKLMVHRRTHTGEKPYACDVCDKYFTQSSHLTVHRRTHTGEKPYACDVCDKYFTQSGQLTVHRRTHNGEKPYACNVCDKSFSEGSKLMVHRRTHTGEKPYACDVCDKSLYVSSNLTYHRRTHTGEKPYACDVCDKSFSEGSKLMVHRRTHTGEKPYACDVCGKYFTQSGQLTVHRRTHTGEKPYACDVCDKSLYVSSNLKYHRRTHTGEKPYACDVCDKYFTQSGHLTVYRRTHTGEKPYTCSVCDKSFSEGSKLMVHRRMHTGEKPYACDVCDKSIDQRLIHYPSVIILKDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -