Apis008669.1
Basic Information
- Insect
- Acyrthosiphon pisum
- Gene Symbol
- clz9
- Assembly
- GCA_005508785.1
- Location
- NW:8846-10567[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-07 0.00021 20.8 0.0 4 41 18 55 15 58 0.90 2 2 4.6 3.3e+03 -2.2 0.0 16 28 343 355 343 358 0.79
Sequence Information
- Coding Sequence
- ATGCCACGAAAATACGAGCGTACTAGTGTCAGGAAATCGTGGGAAAATAAGGATATGGAGGTAGCTATATTAGATGTGACACGTAAAGTTTTAAGTGTAAATGCTGCagcattaaaatacaaaatacctgAGCCTACACTGAggagatatttaaaaaaaaggatcCATCCTTTAGAAGGAGAAGAGTTTAGAATAGAATTTCCCCAAAATTTAGGAAGATTCAAAAAAACCTTTTCTGCAGCACAAGTTGAAGAGCTGAAGCAATACGTGACTGATATTGATAAAAGAGCATTTGGCCTATCACGAAAGCAATTCGCTAATGTATGTTTCGATTATGCAGAAAAAAATGGCGTGACCCATAgatttaatactgaaaaaaaaagtgcGGGCGAAGGCTTCATTAGGGAATTCATGAGAGAATGCGGACTGACTATGAGAAAACCTGAGTCTACATCAGTCGCTCGGCTCATGGCATTTAACCGAGTCAACGTCAGCAATTTTTTTGAGTTGCTTAGAGATGTCAGATTAAAATACTCTTTTACAGCTGAACAAATATACAACGTTGACGAGACAGGATTTTCCACTGTGGCAACGAAAACTCCGAAGGTCATCACCCCTGTAGGTACCCGCCGAGTAATTAAAATTTCTTCAGCAGAACGTGGGGTCACAGTTACGTGTGTGTGCGCCATGAGCGCCACTGGATATTACATCCctccattttttatttatccgaGGGTAAGGATGAATCCGAAATTTTTAGAGGGTGCTCCACCAGGCTCAGCAGCAGTTCCGCATATCTCAGGATGGATGACAGCTACCAACTTTGTCAactatttgaaacatttttcatCACACACTCGCCCAAGTACTCAACGTCCCGTTCTTCTTCTCATGGATAATCACGCCTCTCATGTTACCCTTGAAGCTATAACATTTTGTAGGGAGAATGGAATAGTAATGCTCGGCTTCCCACCTCACACTAGCCACCGATTGCAGCCTCTGGATGTGGGGTTTTATGGGCCTCTGAAAACATCCTACAGTCAGGCGTGTGACGATTTTCTGGTATCAAACCCAGGCATATGTATATCTATAACAcatataccaaaaatatttggtaCAGCTTATTTAAAGGTTGCCACTATCCAGACAGCTGTTAATGCATTCAGAGCAACAGGGATTGAACCATATGACAGTAACATTTTCAGGGATGAAGATTTTCAGCCATCATTGACTACTGATATTCAGTCTGTTGAATCTACTGCTCCTGCCTTTGAGCGTCAGccagaaatattatttgaaaatactaaTTCTGCAATATCGCCTACTGCCAATGATTCTTTTGAAAATCAGCACCCTCAACCACAAACAGAGCTGACACCATCTACTTCTTCAGCCTTGTCTCCACTACCAGTGGCAAGTAAAAAGACTGCTAGAAAACCTAGGAAGAAGTTGCCATCGTTTCTTTTATCAGGAACTCCTGTAAAAGAAGCGTTGGAACAGAAAAGGAAGGAACAAGAAGAGAAAGAGCTAAAAAGACAAAAAAGATTGACTGAGaagtcaaaaaaaaagaaagcaCGACGTCAGTTGGACTTCCCTTCATCTTCAGACGACGAGCCATCTATTCCTGTACCATATATTGACACTGATGATGATATGGACCCGCCTGAAGAAGAAGATAAATTGTGCATCATATGTTCTGAAGAAGGCAAGGACGAACTGTAG
- Protein Sequence
- MPRKYERTSVRKSWENKDMEVAILDVTRKVLSVNAAALKYKIPEPTLRRYLKKRIHPLEGEEFRIEFPQNLGRFKKTFSAAQVEELKQYVTDIDKRAFGLSRKQFANVCFDYAEKNGVTHRFNTEKKSAGEGFIREFMRECGLTMRKPESTSVARLMAFNRVNVSNFFELLRDVRLKYSFTAEQIYNVDETGFSTVATKTPKVITPVGTRRVIKISSAERGVTVTCVCAMSATGYYIPPFFIYPRVRMNPKFLEGAPPGSAAVPHISGWMTATNFVNYLKHFSSHTRPSTQRPVLLLMDNHASHVTLEAITFCRENGIVMLGFPPHTSHRLQPLDVGFYGPLKTSYSQACDDFLVSNPGICISITHIPKIFGTAYLKVATIQTAVNAFRATGIEPYDSNIFRDEDFQPSLTTDIQSVESTAPAFERQPEILFENTNSAISPTANDSFENQHPQPQTELTPSTSSALSPLPVASKKTARKPRKKLPSFLLSGTPVKEALEQKRKEQEEKELKRQKRLTEKSKKKKARRQLDFPSSSDDEPSIPVPYIDTDDDMDPPEEEDKLCIICSEEGKDEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00139475;
- 90% Identity
- -
- 80% Identity
- -