Apis014963.1
Basic Information
- Insect
- Acyrthosiphon pisum
- Gene Symbol
- -
- Assembly
- GCA_005508785.1
- Location
- NC:118397416-118399618[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-10 7.3e-08 31.9 0.0 2 43 12 53 11 55 0.92 2 2 6.2 4.3e+03 -2.6 0.1 1 9 434 442 434 443 0.86
Sequence Information
- Coding Sequence
- atgtcAAAAAGAGGAAAATACGGCCAGTGGTCTGAACAGGATCTACAATTAGCAGTTGCTGCCTACAGAAATGGGGATTATGGTTTGAACAAATGTgcacaaatatacaatgttcCCAAAGCTACTCTTAAGAGACATGCAGATGGTAAAAATGCTCATGTCAATCTTGCCAAATCATTTGGGAGACCAGCAGTATTTGATGGTAATATGGAACAACAATTGGTAAATCATCTTTTACATTTAGAGTCgttattttttggtttcacAATAACGGATATAAGAAAATTAGCTTTTGACATTGCTGAAAAATTTTCACTgactcataattttaataaagaaaaaaaaactgctggaaaaaaatggttttatggGTTTATGAAACGTAATCCACAACTATGTTTAAGACAGCCTGAAGCAACATCTATGGCCAGAGCTaaaggttttaataaaacaaatgttatgGATTTTTTTGATATCCTAGAAAAAAtagttgatgaaaataaaataaatgcaagcAAAATTTACAATGTCGATGAATCAGGTTTTACtactgtacaaaaaaaaactcaaaaagttATATCATTAAAAGGTAAACGGCAAGTAGGAGCCTTAACTAGTGGGGAAAGAGGAGTTAATACTACCATTGTATGCTGTGTTAATGCATCTGGTTTCTATGTGCCACCGATGATTATATTTAAGAGGAAACGAAAATGCCCAGAGTTAGAAATAGGTGCTCCATCTGGTAGTGTTATTGAAATTTCAGACTCTGGTTATATTAACTctgaactttttttaacttgGTTAAAGCATTTTCATTTCCATGTTAAATCAAATAAAGAAAATCCAGTTGTAATACTTCTAGATGGACATACCACACATAGCAAAAATTTAGAGGCTTTGATATTTTCTAAAGAAAATGGAATAATCTTGCTTCAGTTACCTGGACATACTACCCATCGCCTTCAACCATTAGACGTTGCTTTTTTCAAGCCCTTAGGGTTATACTATATTCAAGCTCAAGAAAAATGGCTGCGTCAAAATTATGGTAGAACAATATCACAATTTCATGTGTCAAGTTTACTTAAGGAAGCATACGGTCGAGCAGCTACAGTCGGTATTGCAGAAAATGCTTTTCGAAATTCAGGAATCTGGCCTGTCAATAGACATATATTTCAGGACCATCAATTTATTGTTTCCGACTCTTTAAATAGATGCCCTACTCCGGAACCAGAAACTGTGATTGATAATGTTGAAAAcctagaaaattatattactgtCAATAATGAGAATAATGATAAAACTAAAGATGCACTTGATGAAGCAATCACAAATGATGatgagcaaaataataatttattttcaaaggtTCTTTTAGAGGTTTCTCCTATACCCAAAACTCAGcggtatacaaaatcaaaaagaaGTGGAAGGGGTGCTAAAAAAGCTGTACATTTCCCCATAGCTGCAATCCGTATGTCCAAATGGGTTTTAATAAGGTTTTATACAAGAGAAATTTGA
- Protein Sequence
- MSKRGKYGQWSEQDLQLAVAAYRNGDYGLNKCAQIYNVPKATLKRHADGKNAHVNLAKSFGRPAVFDGNMEQQLVNHLLHLESLFFGFTITDIRKLAFDIAEKFSLTHNFNKEKKTAGKKWFYGFMKRNPQLCLRQPEATSMARAKGFNKTNVMDFFDILEKIVDENKINASKIYNVDESGFTTVQKKTQKVISLKGKRQVGALTSGERGVNTTIVCCVNASGFYVPPMIIFKRKRKCPELEIGAPSGSVIEISDSGYINSELFLTWLKHFHFHVKSNKENPVVILLDGHTTHSKNLEALIFSKENGIILLQLPGHTTHRLQPLDVAFFKPLGLYYIQAQEKWLRQNYGRTISQFHVSSLLKEAYGRAATVGIAENAFRNSGIWPVNRHIFQDHQFIVSDSLNRCPTPEPETVIDNVENLENYITVNNENNDKTKDALDEAITNDDEQNNNLFSKVLLEVSPIPKTQRYTKSKRSGRGAKKAVHFPIAAIRMSKWVLIRFYTREI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00134185;
- 90% Identity
- iTF_00940353;
- 80% Identity
- -