Apis010984.1
Basic Information
- Insect
- Acyrthosiphon pisum
- Gene Symbol
- -
- Assembly
- GCA_005508785.1
- Location
- NC:55869937-55871968[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.6e-11 5.3e-08 32.4 0.0 1 37 18 54 18 59 0.91 2 2 5.8 4.1e+03 -2.5 0.0 28 38 149 159 149 166 0.72
Sequence Information
- Coding Sequence
- ATGCCTAACTATTATAAGCGAACACCCGGCAGTCGTACTTACCACAATTTTTCTGAAGAAACTTTAGAAAATGCATTAAACGAAATACGAAATAATAGATTGACTTACCGACAGGCTTCTGATAAGTATGGTATACCAATAAGCACTTTAAgtaggaaaaaaaacaaactaaatctTAATCCCCACGGTGGCCAAACAGCATTAACTTCTACTGAAGAAGATAATATTgtagaaacaatattatttgcatcTGATTGGGGTTACCCTTTTGATAGGGAAGAAGTTAAGAGATTGATCAAGTCATACTTAGATCGTGCCggccgaaaaataaaaatatttaaaaacaataaacctgGCGATGATTGGTACACACGTTTTGTATCCAGACATTCTGGTCTTTTGAAACCTAGACTTTCCGAGAATATCAAAAGATCACGAGCTGCTGTCTCAAGAACTACcatcaatgaatattttaataaccttGAATTAAGTTTAGAAAATGTACCACCGCAAAACATAATTAACTATGATGAGACAAATTTTATAGATGATCCGGGTAGAACAAAAGTTttagtgagaaaaaaaaataaacatgctGATTCAATTATGGATTCTACAAAGTCTGCTACATCGGTTATGTTTGCTATCGATGCATCTGGTGTTATGCTTCCTCCATATGTTGTATACAAATCCCTCCAGATGTGGGAACCTTGGACATTAGGAGGGCCAGAAGGGTGTAGATACAACAGATCACCCTCTGGGTGGTTTGATCAACCAATATTTGAAGAATGGTTTCAAACTATAATTATTCCACATTGCCGTCGTTTGGATGGAACTAAAGTTATTATTGGAGACAACTTGGCAAGTCACATTTCGCACACACCTGACTCAACCATTGGATGTGTGTTGTTTTCGGCCTATGAAAATAGCATGGCGTAA
- Protein Sequence
- MPNYYKRTPGSRTYHNFSEETLENALNEIRNNRLTYRQASDKYGIPISTLSRKKNKLNLNPHGGQTALTSTEEDNIVETILFASDWGYPFDREEVKRLIKSYLDRAGRKIKIFKNNKPGDDWYTRFVSRHSGLLKPRLSENIKRSRAAVSRTTINEYFNNLELSLENVPPQNIINYDETNFIDDPGRTKVLVRKKNKHADSIMDSTKSATSVMFAIDASGVMLPPYVVYKSLQMWEPWTLGGPEGCRYNRSPSGWFDQPIFEEWFQTIIIPHCRRLDGTKVIIGDNLASHISHTPDSTIGCVLFSAYENSMA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -