Apis005918.1
Basic Information
- Insect
- Acyrthosiphon pisum
- Gene Symbol
- -
- Assembly
- GCA_005508785.1
- Location
- NC:64003301-64004440[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-11 2.7e-08 33.3 0.0 1 37 18 54 18 59 0.91 2 2 2.7 1.9e+03 -1.4 0.0 28 38 149 160 149 167 0.69
Sequence Information
- Coding Sequence
- ATGCCTAACTATTATAAGCGAACACCCGGCAGTCGTACTTACCACAATTTTTCTGAAGAAACTTTAGAAAATGCATTAAACGAAATACGAAATAATAGATTGACTTACCGACAGGCTTCTGATAAGTATGGTATACCAATAAGCACTTTAAgtaggaaaaaaaacaaactaaatctTAATCCCCACGGTGGCCAAACAGCATTAACTTCTACTGAAGAAGATAATATTgtagaaacaatattatttgcatcTGATTGGGGTTACCCTTTTGATAGGGAAGAAGTTAAGAGATTGATCAAGTCATACTTAGATCGTGCCggccgaaaaataaaaatatttaaaaacaataaacctgGCGATGATTGGTACACACGTTTTGTATCCAGACATTCTGGTCTTTTGAAACCTAGACTTTCCGAGAATATCAAAAGATCACGAGCTGCTGTCTCAAGAACTACcatcaatgaatattttaataaccttGAATTAAGTTTAGAAAATGTACCACCGCAAAACATAATTAACTATGATGAGACAAATTTTATAGATGATCCGGGTAGAACAAAAGTTttagtgagaaaaaaaaataaacatgctGATTGA
- Protein Sequence
- MPNYYKRTPGSRTYHNFSEETLENALNEIRNNRLTYRQASDKYGIPISTLSRKKNKLNLNPHGGQTALTSTEEDNIVETILFASDWGYPFDREEVKRLIKSYLDRAGRKIKIFKNNKPGDDWYTRFVSRHSGLLKPRLSENIKRSRAAVSRTTINEYFNNLELSLENVPPQNIINYDETNFIDDPGRTKVLVRKKNKHAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -