Apsi018685.1
Basic Information
- Insect
- Acronicta psi
- Gene Symbol
- -
- Assembly
- GCA_946251945.1
- Location
- CAMIUM010000086.1:2660516-2669407[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.2 73 4.3 0.2 1 23 241 263 241 263 0.91 2 14 0.059 3.7 8.4 0.3 5 21 324 340 322 341 0.92 3 14 0.16 10 7.0 2.0 2 23 353 375 352 375 0.89 4 14 0.068 4.2 8.2 0.1 3 21 413 431 411 432 0.89 5 14 7.8 4.8e+02 1.7 1.9 1 9 437 445 437 459 0.79 6 14 1.6 98 3.9 0.3 2 23 740 761 739 761 0.93 7 14 3.4 2.1e+02 2.9 0.2 1 21 783 802 783 804 0.74 8 14 0.086 5.3 7.9 3.6 2 23 846 867 845 867 0.95 9 14 0.018 1.1 10.0 0.5 3 23 884 904 883 904 0.98 10 14 6.6e-07 4.1e-05 24.0 2.6 1 23 910 932 910 932 0.98 11 14 0.0003 0.019 15.6 0.8 1 23 937 959 937 959 0.97 12 14 0.0062 0.38 11.5 0.7 2 23 966 988 965 988 0.95 13 14 0.08 5 8.0 0.4 1 20 995 1014 995 1015 0.93 14 14 0.0027 0.17 12.6 0.1 3 23 1027 1048 1026 1048 0.97
Sequence Information
- Coding Sequence
- ATGTCGGATACGTCGAGGAAAAGGTCGAGAAAGTCGAAGTTAGTGCCACGAGAGTGTACTGTAGACGAAGATGTTGAAGTGCAGAGCCCATTCTATCAAGTTCTCAAAATGAAGAGAGAAACCGAAGAAGAGAAACCTAAGTCGAAGTTACAAGAGGCTACTGCAGGCGATGGTCTTGATGCGCAGAGCCCAGTCTTTAAAGTTCCCAAAATCAAGAAAGAAACCCCAGAAATGATACCCGAACCTTTGCCAATTGACAAACCGGAACTTTGCAATATGGGTATTTTGAAAAAACTTTCTGCAGCAGCTGCGGACATTGCTGAGCCTGCACCTCCAATTAAATTTGATATTGAGGTGGAAGTAGAACAGTGTAGTGATGATGATAACATGGAAATGACCAATGAGGTTCCAGAGGATCCACAAATAATATTGAACAAACCGTTAACAAAATTACCTGTTACTTACAAGAATACTAAGAAAACAAACAAGCCTTCGTCTGTATTGCTAACAGAAACCAAAATACTGGAGGCAGCGGATGCAATCATACAACGTTCCTCCAACCCAGCTGACCGAATCTTGGATGTTGGTGTTAGAAACACAATAGGTCACGAGAGAAAGGGCATATTGTATACTAACAAGCATGAGGCCCTTATTCAGGATAAGTTGGATGTATGGAAGATTTGGGAGTCGAGAAGCTTCTACCGAGAAAGCCCTCTATTTTATAAATGCTATGTTTGTGAAAAATCTTGGTGGAATTTATCCGAATTTCGGGATCATATTGCTGAGCATCCTACTCTGAATATAGCTTTGGAACACTATGAGAAGCACGAAGTCAATCTCATAGCGTTTATTGGAAAGAAACCAGAAGTCAAAGATATATATGCAGAAGGCTTTTGCTATAAATGTGGTAATGATTTCGACGCTCATAAACTCAGTACCCTATACCAGAAAAGGTACTACAAGAATAAAGGTTGTAACAAAGTATTTTTCAGCTGTGTGGGCCTTAAAAACCATATGTCATCGTGCGAGCAATGCAATGTTAGCAATATGACAATTCAATGCCAGATTTGCAAATGCAAATTCGAGACAGAAGACCTGTTGGATATTCACTTGGGATTATGTCATACGGTCAGGTTGGACGTCCCAATTCAGTCTAGATGTGCTACTTGTAAGGAATGCTCTGCCCGATATAACCTACTTCACTTACACATTTGCAAGAGAGGCTCCCAAACACCATGTATCTACTGCTTCCGTAGTTTCCCTAATAAAAGTCTCTATGTAGTTCATATGGAGAACAGTTGTGAACCGTTTACTTGTAATATATGCGGGCAAGTGTTGTTGTGGAACTGTCAAGTGTATGAACATATGATGAAACATTCTGACAAGTATACGTTGGTGAGGAAGTGTGTGATTTGTGAAGATTTTAGGGTATATCTTAATAATGATGCTGCGTTGGAGCATCGGTACAAGGGACATCCAGAGAAGGATATCAAAAATCAATACATAGTTAAAATTTTAGTGCCAAAATCCTGCCTAGAAGAGTCGCCATTGAAACCCAAGAACGAACCGGTATCGGAACCGATCCGAGTACAACGATCCGAGACGCAAACAGTCCCGGAATCGGAACAAGAAGCGGTACCGGGATCTGAAATGGAACCGGTACTGAAACCGGAACCTGATAAAGATTATGAAAACATAATTGTTAAAGAGGAGCCTTTAGACATCGATGATAACCCTCTTCAATTCGTAATTAAAGAAGAACTTTTGGATCCAAATGAAAACACAGCGGAGAATACATCAGACACTTTCATGACCGACATACAAATAAAACAAGAATACAATGAAGATGAATACGAAGAAGACATTATAAAACTCAACATAGACATGAACAACGGTATGTTGATACCGAAACAAGAGATTGAGAGCGAAGAATCTTTTGAATATGAATCCGCTGAATACCCAGTCATTGTCAAAGAAGAATCGATATTAGAACCCGAAGTTATTTTAAATCAGACGTCAAGACCACAGAAAAAGATGTATAAGTGTACCCGCTGTGGATTCCGGGGCTTGCATAAAGAATATAAAAATCATATTGAAATAGAATGCATACGGTCTTCATCTGTAGACCATCCGTATTTCTGTACTAAATGTGACAAGGAGTTCTTATGCATGAAAAAGTACCTCGGACACTTTTATATACATGGCTACGACTGCTTATCCTGTCCGGAATGTTTAACGAAGTACTACAGCTTCTCTAAATTGGTACCACATGTGCAAAGTCATATAAAACAAATGTTTGTGCGAGTGAAGTCAATAACTCAAGACGGTACAAAGCTCAAGCCAGAGTATCAGTGTAAAAAGTGTAGTGAAGTGGTTGCAGCGTCTTTGTTTTTTGATCATTGGGAGCTGCATATTCAGAGCAGTCCGCAGAAGGCTGCGGCTCAGCTGAGGATGAAGACAACGTACAATGGACACCAAAGCGCACAGAAGGAATTGATTAAAGAGAGTCTGAGATGCATACAAAAACACACCAAACAGTGTAACCAGTGCGACAGAAAATTCAACCGAATAAATGAGTGCAAGCGACATATTATAGAGCATCTATTGGCAGACGCTTATAACCGTAAACATGAATCCGGAGAGCTGTTATGCCAGAAATGTGGCCTCGGGTTCCTTACTCCGGAGAAATATAAGCAGCATATGCGAGACCATGCGTCCCTGCCAGTGTACCGTTGTGAACTTTGTGACCGTACATTCAGTGATTCAAGTAACTTTACTAAACATAAAAAAGTGCATAATTTGAAAGTGTTTATCTGTGATATATGCAAGAAGAAGTTCCAGTCTAAATTGACGTTGGAGAAACATGTTGCCATGCATGCTCATATGAAGCCGATCACTTGTGTCGTTTGTGCCAAAGATTTCTACTTTGAATCAAACTACCGTCGCCACGTCAGGTATTTCCATGAAAAAGTCACTGCAGGTTTTCGCTGTGTAATATGCAATGAGAGATTCTCAAGTTTAAAGTTTAAATGGAATCATATGTGGGAGGTTCATAAGGAGAGAAAGCAAAAAGCCGACTGTCCAATATGCTACGCTTCCTTCAGAAAATACTCTGATGTCCGTGCCCACGCTAAAACGGAACATAATACTGAGGTCTCTGTGTATAGTTGTAAAAATGCAACAAAAAAACAAACAAAAAGTGTTATTGATATTCAAAATTATTTGAAAAATAATGCGGATACAAACATCAAAATTGGTGAGATGGAGACATTGGTTGTGTTTGAATGA
- Protein Sequence
- MSDTSRKRSRKSKLVPRECTVDEDVEVQSPFYQVLKMKRETEEEKPKSKLQEATAGDGLDAQSPVFKVPKIKKETPEMIPEPLPIDKPELCNMGILKKLSAAAADIAEPAPPIKFDIEVEVEQCSDDDNMEMTNEVPEDPQIILNKPLTKLPVTYKNTKKTNKPSSVLLTETKILEAADAIIQRSSNPADRILDVGVRNTIGHERKGILYTNKHEALIQDKLDVWKIWESRSFYRESPLFYKCYVCEKSWWNLSEFRDHIAEHPTLNIALEHYEKHEVNLIAFIGKKPEVKDIYAEGFCYKCGNDFDAHKLSTLYQKRYYKNKGCNKVFFSCVGLKNHMSSCEQCNVSNMTIQCQICKCKFETEDLLDIHLGLCHTVRLDVPIQSRCATCKECSARYNLLHLHICKRGSQTPCIYCFRSFPNKSLYVVHMENSCEPFTCNICGQVLLWNCQVYEHMMKHSDKYTLVRKCVICEDFRVYLNNDAALEHRYKGHPEKDIKNQYIVKILVPKSCLEESPLKPKNEPVSEPIRVQRSETQTVPESEQEAVPGSEMEPVLKPEPDKDYENIIVKEEPLDIDDNPLQFVIKEELLDPNENTAENTSDTFMTDIQIKQEYNEDEYEEDIIKLNIDMNNGMLIPKQEIESEESFEYESAEYPVIVKEESILEPEVILNQTSRPQKKMYKCTRCGFRGLHKEYKNHIEIECIRSSSVDHPYFCTKCDKEFLCMKKYLGHFYIHGYDCLSCPECLTKYYSFSKLVPHVQSHIKQMFVRVKSITQDGTKLKPEYQCKKCSEVVAASLFFDHWELHIQSSPQKAAAQLRMKTTYNGHQSAQKELIKESLRCIQKHTKQCNQCDRKFNRINECKRHIIEHLLADAYNRKHESGELLCQKCGLGFLTPEKYKQHMRDHASLPVYRCELCDRTFSDSSNFTKHKKVHNLKVFICDICKKKFQSKLTLEKHVAMHAHMKPITCVVCAKDFYFESNYRRHVRYFHEKVTAGFRCVICNERFSSLKFKWNHMWEVHKERKQKADCPICYASFRKYSDVRAHAKTEHNTEVSVYSCKNATKKQTKSVIDIQNYLKNNADTNIKIGEMETLVVFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -