Basic Information

Insect: Acronicta psi
Gene Symbol: -
Assembly: GCA_946251945.1
Location: CAMIUM010000055.1:1962200-1971903[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0042 0.26 12.0 0.4 1 23 438 460 438 460 0.90

2 11 0.0018 0.11 13.2 0.2 1 23 467 490 467 490 0.97

3 11 0.0013 0.078 13.7 2.5 1 23 494 516 494 516 0.97

4 11 0.07 4.3 8.2 0.2 1 23 521 544 521 544 0.94

5 11 0.034 2.1 9.2 2.1 1 23 548 571 548 571 0.92

6 11 0.72 44 5.0 6.3 3 23 630 651 629 651 0.93

7 11 0.16 9.8 7.1 1.6 3 23 673 694 671 694 0.96

8 11 0.0018 0.11 13.2 1.0 3 23 709 729 708 729 0.97

9 11 1.8e-05 0.0011 19.5 0.3 2 23 735 756 734 756 0.97

10 11 4.7e-06 0.00029 21.3 0.3 1 23 762 784 762 784 0.98

11 11 2.9e-06 0.00018 22.0 1.4 1 23 790 813 790 813 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0042	0.26	12.0	0.4	1	23	438	460	438	460	0.90
2	11	0.0018	0.11	13.2	0.2	1	23	467	490	467	490	0.97
3	11	0.0013	0.078	13.7	2.5	1	23	494	516	494	516	0.97
4	11	0.07	4.3	8.2	0.2	1	23	521	544	521	544	0.94
5	11	0.034	2.1	9.2	2.1	1	23	548	571	548	571	0.92
6	11	0.72	44	5.0	6.3	3	23	630	651	629	651	0.93
7	11	0.16	9.8	7.1	1.6	3	23	673	694	671	694	0.96
8	11	0.0018	0.11	13.2	1.0	3	23	709	729	708	729	0.97
9	11	1.8e-05	0.0011	19.5	0.3	2	23	735	756	734	756	0.97
10	11	4.7e-06	0.00029	21.3	0.3	1	23	762	784	762	784	0.98
11	11	2.9e-06	0.00018	22.0	1.4	1	23	790	813	790	813	0.98

Sequence Information

Coding Sequence: ATGGTGTGTCAATGCTGTGTTAAAGATTGCGGTAATAAAAGCACCACTAAGAAAAAAGACCCCAATTCCTTAATTTCGTTTCACGCATTTCCTGCAAACCCTGATCTCAGACGGAAATGGTTGAGAGCAATAGGCCGTTCAAACTGGAAGCCTCCAAACTATGCCCGTGTATGTAGCGCGCATTTTAGTACTGACCAGATGAGTTATGTTGGCTACCGACCAAGAGTCCTGGAGGATGCTATACCAGTTAATTTTCTACCTCCAAATTCCTATTTTGAGGCATCAAATTTGGAAGTATGCAGGATATGTTTAGCCACAGATGTTAATTTGGAAAGCCTGCTAGACACACACCTTGGCAGCTGTATGAATTCTATAGCAGGATGCCTGCCAAACTATGACATAGATGGTCTTCCACAATTTGTCTGCCAGCAATGTGCACCAAGTCTGATAACATGCAGTGAACTCATTAAAAACTGTATCACTTCGCAGACAACACTACATAATATTTATATTAAGAATGGACAGCTAACTAAAACTCTAATAAAAAACAGAGGACAAACACAAGATGGTAATCCTGAAGGAAACTTGACAGCTACAGTTGATAACACTTCATCAATTAATGATTTCTTGGCTAAATATGAAGAGCTCAACAAAAGTCCAGACTTGATCAAATCAAAATCGGAGCATTGTGCTTTGCCAGTTGCCAGTGTTAACACCCCTCAATTGAAAAATGAAGATGTAACCTCTATTAAAATTGAACAAAAATATATTGAACCTATAGAATGTAAAGTTGAATTCAATGACAGTGAATTAAATGAGTTAAATGTAAATGAATTAGCATTAAATGAAGATGTGTTAAAACAAGATGTGTTAAGTGTTAATGAATTAGGATTAAATGAAGATGTGTTAAAAGAAGATGCAATAGATGTTAATGAGTTGCAATTAAATGAAGATGAGATTAAAGCAGATTTATTAAATATAAATGAATTTAATATTAAAGAACTTAGTGAAATAGTCACAGACAATGACGAGGATGATGCAGAAGGAAGTGGGACCAGTTGTTCCTTAGGAAGTTTTAGTTCAAATGACGACATCAGCAGTGATTCTAGTTCCGAGGCAAAGAAGTCTAAATATGTTAAAGTAAAACCCGCGAAAAAGAAGTTTACAAGAAGTAGAACTAGCAAAGGATTCACTCCGCTCGAAACGGAAATGCAGAAATACTTCGATATCGTGGAGCTATCATCGTTAGAAGAAAAAATACAAGAATGGGCAAAGGGCACGACCCGTCGTCCTGTGACGTGTAAGAACGTGTACCAATGTGAGATATGTAACAAAGTGTTTGGTAACGTCGTCACTTATCACGTTCACGCTACCGGCCATGATCCAATTCTAGGTCCTTATGAATGCCCAGTGTGCAAGCTTCGGTTTAAAAGCGAGGCGCTGGCGGCGTCCCACACTAGACGTGATCACAGCAAGAAATTTTTCTGCAAAACGTGCCCTAAGACCTTCACAAATGCAGGTGTGGCGCAGAAGCACCACCGGCTGCACGCGGGGCACGAGTACTTGTGCCCGCTGTGCCCGTTCGTGGCGCGCCACCAGTCCAGCGTGGGGCAGCACCAGCGCGCCGCGCACGGCGACCGCCACGTGTGCGCGCGCTGCGGGCAGGCCTTCTACAGCGCGCGCGGCCTCCACGTGCACCTGCACGCCAAACACCGCACGCTGCACGAGGAAAAACTCTCCGTGAAGTGTCGTTGTGAACCATGCGGTATTGACTTCCTGTCGGAGGAGGCTCGGCGCGTGCACATACTAAACTCCAAACAACACCAATCGGAGAAACCAGATAAAAAACGCCGTGCAAGCACCCAAGAGAACAGTCTCCGCAACTGCTGCAAGGTTTGCGGTCACCAGTGCGGCTCGCAGAAGGAGCTGAAGCAGCACAAAAACGCGGAGCACCCCGGCGGCCGCCGCCCTCGCCGCTCCAACCATCCGTGGAAGGGAAAACCTTACCCTATAAACTGTGAACTTTGCGGTGAAACAATAAACACTCGCCGTCAACACTGGCAGCACATGCGGAAGCAGCACCCCTCCAACGTGGACACCTACCAAGCCGTAGTCACCGCCATCTGCGACATTTGTGGCAAGGGCTGCCAGAGCGCTTCAATGCTGCGCCTACACAAGCTACGTCACCGCAGCCCCACCGTCCGGTGTCAGCTATGTCCGCGTATGTTCTACGACAAGTACGGGCTCATACGTCATGCGCGCACGCACAAAGCTGAGAAGCCGCACCAGTGCCGCATCTGCGGAAAAGCCTTCAAAGTGCCAGGCAACTTGGATAGGCATGCCAAAGTACACTCGGACGCCACACCATTCGAATGCACGATGTGCGGCAAAAAGTTCAAATACTCGTCAAGTGTGAAACTGCACGTCCGCACAGTGCACTACAAACAACCTCAACCGGTTCGCAAGAAGAGAAACAAGTACGCGAAGGATGAGATGAATTCTTAA
Protein Sequence: MVCQCCVKDCGNKSTTKKKDPNSLISFHAFPANPDLRRKWLRAIGRSNWKPPNYARVCSAHFSTDQMSYVGYRPRVLEDAIPVNFLPPNSYFEASNLEVCRICLATDVNLESLLDTHLGSCMNSIAGCLPNYDIDGLPQFVCQQCAPSLITCSELIKNCITSQTTLHNIYIKNGQLTKTLIKNRGQTQDGNPEGNLTATVDNTSSINDFLAKYEELNKSPDLIKSKSEHCALPVASVNTPQLKNEDVTSIKIEQKYIEPIECKVEFNDSELNELNVNELALNEDVLKQDVLSVNELGLNEDVLKEDAIDVNELQLNEDEIKADLLNINEFNIKELSEIVTDNDEDDAEGSGTSCSLGSFSSNDDISSDSSSEAKKSKYVKVKPAKKKFTRSRTSKGFTPLETEMQKYFDIVELSSLEEKIQEWAKGTTRRPVTCKNVYQCEICNKVFGNVVTYHVHATGHDPILGPYECPVCKLRFKSEALAASHTRRDHSKKFFCKTCPKTFTNAGVAQKHHRLHAGHEYLCPLCPFVARHQSSVGQHQRAAHGDRHVCARCGQAFYSARGLHVHLHAKHRTLHEEKLSVKCRCEPCGIDFLSEEARRVHILNSKQHQSEKPDKKRRASTQENSLRNCCKVCGHQCGSQKELKQHKNAEHPGGRRPRRSNHPWKGKPYPINCELCGETINTRRQHWQHMRKQHPSNVDTYQAVVTAICDICGKGCQSASMLRLHKLRHRSPTVRCQLCPRMFYDKYGLIRHARTHKAEKPHQCRICGKAFKVPGNLDRHAKVHSDATPFECTMCGKKFKYSSSVKLHVRTVHYKQPQPVRKKRNKYAKDEMNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00018229;
90% Identity: iTF_00018229;
80% Identity: iTF_00018229;