Apsi010357.1
Basic Information
- Insect
- Acronicta psi
- Gene Symbol
- -
- Assembly
- GCA_946251945.1
- Location
- CAMIUM010000034.1:4767704-4776705[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00038 0.023 15.3 1.3 1 23 275 297 275 297 0.99 2 11 0.094 5.8 7.8 3.7 1 23 305 328 305 328 0.94 3 11 0.0025 0.15 12.7 4.7 1 23 430 452 430 452 0.99 4 11 0.00052 0.032 14.9 4.0 1 23 460 483 460 483 0.97 5 11 0.42 26 5.7 3.9 1 23 487 509 487 509 0.98 6 11 0.012 0.72 10.6 2.9 1 23 514 537 514 537 0.97 7 11 0.032 2 9.2 0.1 1 20 583 602 583 604 0.94 8 11 0.29 18 6.2 0.1 2 23 649 671 648 671 0.89 9 11 4.6e-06 0.00029 21.3 1.1 1 23 680 702 680 702 0.98 10 11 0.0015 0.09 13.5 0.8 3 23 710 730 708 730 0.96 11 11 4.9e-06 0.0003 21.2 2.6 1 23 736 759 736 759 0.98
Sequence Information
- Coding Sequence
- ATGTACGATCTTAAAGCATGTCTGGTGTGTTTCAACACTGATGTTAAATTATTTAACATGAACAGTGGCCAATTACGGCGTGAATTCCAGTTGATTTCAGGCATTCAGATAGCCCAAGGGAGTGGATTGCCAGATTATTTATGTTATCAGTGCTCCGCAATTGTTAGAAACTTCAAGAAATTTCGCGACAGATGCCACCGGGCTCATTATGCTTTAAAAGTAATATTAAACAGAAATAATGAGATTAATACATCAACTCTCAAACATATTGACCGTAATCTTCTCAATAATATACAACCACTATCATTTATGAATTTGAATAAATTGCACTATGAGGAAGTAAAGTTTAAATGGACAAAAAATAACCGCATTAATAGATGCGGTCCTACTGAAGAAACCATACCCATATCTCACTGGAGTACCCTCACTCCTGATGACACTTTTGATGGATTAACTGATACAGTAAATACAGAGCTGGAATTCAGTGAAGGCAATATTAAAATAGATTCTGATTCAACATTACTACATGAGGAAGTAATCATTGATTATGAATTGCCTAAGCATGTGTCTACGGACTTCTTGTGTGAAACGACAGCAGATCCTGAAATACCAGACACATTTCTAGATAATGACAACTTTCACAGTGACATTAATGCAGACTTGGATGAACCAGAATTATCCAACCAGTCTTGTAAAGTTGAGAATACAGAAAATGTTGATGGCTCTACTAACACGGACGAAGAGTATGCTACGGTGGTTCCTATATCCGTTAAAGATGCTAAAGCGGCAATTGAAGTATACAAAATGTTCAGCAATGGAAAATACCGCTGTGAGATATGTCATAATGCTTATAATAATGAGGAGCGCTTGAAGGTTCATTTACGTATGCATGATAAGCATATCAGTGGCTCCTTCCACTGTGGGCTTTGCCAGTACTACTACAAAACTGAATTTTTATTAAAATCCCATATGACTGAAAAACACCTGTTTAAGTATCTGTGCAGGAAATGCCCTGAAGTCAATTTTGATAGATCTTCAGCAAAACAACACTACATCTGGGCACACTTACAAAAAGGAACCAAAAAAAATGCTAACTGGTATGAATCAAGACCAAAATGGATGAACGGCCGGGGCGGCAAAAGAATAAAAGGAGTGGTCACTTTGAAGCCTGTTAGAAAACTTAACAAATTGCCTGAAGACTTCCTCATATACTCTCCTATCAAACATGAGGAGCAGTACACATTGGTGCAAGAGCGGCAAAATACCAGGAATTACCAGGAGGCAAAGTATCAGTGCCACTTGTGTTACCGCGGCTTTAGGCTCTTGGTGACATACAACAAGCATATGAAGAAACACGACCCTGTTCACTCGGGTCAATTCCAGTGTGATATGTGCAAGCTCCACTTTAAGGACCTGAGGAAGCTGTACAAGCATATGAACATTACTCATCTGTTCAAATACTCATGTCAATTGTGCAGCTATGTGTGTTACAATCGAGGTCAAGCTCACATACACTACAGATGGCATAAAAACGTAACATATGACTGTCCACATTGTAATAAGCAATTCATGAAGGGGTCAACGCGTCTGACTCACATTAGGATGAAGCACCCGTCTATGTGCCTGTGCAACTTGTGCGGGCACAGCTTCGTGAGCGACACCGGACTGTACTGCCACAAGCAGATAGCACACACTGAGGAGGAGATAGAGCTAAGTAAGAAAATAGGCGTCGACCCATCGGACCCGCACTACTGCGCCGACTGCAACATTCAGTTCGTGACGTCAGCCGCCTTCGCCACACACCTTGGCAGCTCGTACAAACACTCCACTACCAATGTTTCGATCAAGGCGAGTAACAAATCTAAGAGGGGCGAGAGTCGCCGCGGTCGGCCGCGCCGCGGCGCCTGCTCCGAGATCGTCAACAACGGCATCACCACCTCCAGTACCTGCGAAGTGTGCGGCAAGTTCCTAGCCAACGACGTGCAGGCGCGCAAACACTACGAGGCGGAACACCCCGACACCGAGTACCTCAAGCGATACATGTGCGACGTCTGCGGACACACCACTAGGCAATACGCGAATCTGTTAGTGCACATGCGCACGCACACCAACGAGAAGCCGTACGGGTGTCCGCACTGCGACCGACGGTTCAACATGCCCAGCAACAGGGACAGACATCTTGTTGTCCACACGGGCGAGAAGCGGTACCAGTGCCAGCATTGCAACCGTCGCTTCACGCAGAGCAGCGCCGTCAAGCTGCACATACAGACCGTGCACCTCAAGATACCTTACGCGCCCTGGAACAAGAAGAACCGGAAGCGGCGCAAGGAACTGGAAGCCGCAGGCGTGTCGACCCCGGTACTGACCGCCTTCGAGACGCCAGCAGACTATCTCGACGCTTACATAACCTTCAATGACTGA
- Protein Sequence
- MYDLKACLVCFNTDVKLFNMNSGQLRREFQLISGIQIAQGSGLPDYLCYQCSAIVRNFKKFRDRCHRAHYALKVILNRNNEINTSTLKHIDRNLLNNIQPLSFMNLNKLHYEEVKFKWTKNNRINRCGPTEETIPISHWSTLTPDDTFDGLTDTVNTELEFSEGNIKIDSDSTLLHEEVIIDYELPKHVSTDFLCETTADPEIPDTFLDNDNFHSDINADLDEPELSNQSCKVENTENVDGSTNTDEEYATVVPISVKDAKAAIEVYKMFSNGKYRCEICHNAYNNEERLKVHLRMHDKHISGSFHCGLCQYYYKTEFLLKSHMTEKHLFKYLCRKCPEVNFDRSSAKQHYIWAHLQKGTKKNANWYESRPKWMNGRGGKRIKGVVTLKPVRKLNKLPEDFLIYSPIKHEEQYTLVQERQNTRNYQEAKYQCHLCYRGFRLLVTYNKHMKKHDPVHSGQFQCDMCKLHFKDLRKLYKHMNITHLFKYSCQLCSYVCYNRGQAHIHYRWHKNVTYDCPHCNKQFMKGSTRLTHIRMKHPSMCLCNLCGHSFVSDTGLYCHKQIAHTEEEIELSKKIGVDPSDPHYCADCNIQFVTSAAFATHLGSSYKHSTTNVSIKASNKSKRGESRRGRPRRGACSEIVNNGITTSSTCEVCGKFLANDVQARKHYEAEHPDTEYLKRYMCDVCGHTTRQYANLLVHMRTHTNEKPYGCPHCDRRFNMPSNRDRHLVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKELEAAGVSTPVLTAFETPADYLDAYITFND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00017643;
- 90% Identity
- -
- 80% Identity
- -