Apsi005442.1
Basic Information
- Insect
- Acronicta psi
- Gene Symbol
- -
- Assembly
- GCA_946251945.1
- Location
- CAMIUM010000017.1:8264909-8268051[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4.8 3e+02 2.4 0.3 5 17 17 29 16 30 0.89 2 18 0.056 3.4 8.5 0.5 1 20 165 184 165 186 0.94 3 18 0.023 1.4 9.7 1.7 1 22 245 266 245 266 0.94 4 18 4.8 2.9e+02 2.4 0.8 2 23 324 346 323 346 0.94 5 18 0.0004 0.025 15.2 0.6 1 23 352 375 352 375 0.96 6 18 0.58 36 5.3 0.2 1 19 379 397 379 400 0.85 7 18 0.002 0.12 13.1 0.1 1 23 408 431 408 431 0.94 8 18 1 62 4.6 0.5 1 23 436 459 436 459 0.93 9 18 0.00013 0.0081 16.8 0.2 2 23 472 493 471 493 0.97 10 18 1.5e-05 0.00096 19.7 1.6 1 23 497 519 497 519 0.98 11 18 0.27 17 6.3 1.2 2 23 525 545 525 545 0.96 12 18 1.2e-05 0.00074 20.0 1.7 2 23 551 572 550 572 0.97 13 18 1.1 66 4.5 0.1 2 23 577 597 576 597 0.91 14 18 4.5 2.8e+02 2.5 4.7 2 23 616 637 615 638 0.94 15 18 2.2e-05 0.0014 19.2 2.4 1 23 644 666 644 666 0.98 16 18 0.00082 0.051 14.3 0.5 3 23 673 693 671 693 0.96 17 18 0.0013 0.079 13.6 0.8 1 23 699 722 699 722 0.93 18 18 0.024 1.5 9.6 0.7 3 23 729 750 727 750 0.94
Sequence Information
- Coding Sequence
- ATGAACTGTTTCAAGCCAAACATCAAAAGTATCCTGCACAGCACACATTTTTGCGGATTATGTTTAAACAGCAAAAGTAATTTACGCGCTATTGATCAAGAAATAGAGATTACTATCAATCAACAATCTCGCACAAAAACGTTAAAATCTATCAATGATGTTGTATTTAAAGAGACTGAAAGTATCCTAGCCAGTTCACAAATATGCAGCTCTTGTACAGAAAAACTGTTGCAGTCATATATCTTCATAGAAAATACTTTAGAAACATCTAGAATGATCGGGCGGTATGTCAATGATTTATTTTGTAAAGCCAATGATATATTTAATCATCTGACAGATGAAAACATAGAAAGCTCTAATGTTGTTATTGTTTTGGAAGATAGTGTGGACAATTGTATTGCTAAACAAAAGGTACACCACACAGCAAAAAAAGGGGATGCAACAAGTGAAATTAACAAGAAAACAGTTGCACCAGAAAGGAAACATTCCAAATTCAAATGTGACAAATGCAATACCATTCTACCCTCATTTAAAGAATTAAAGTCACACAAAATGGAATGTAAGAGACCAAACTCAATACAATACAAAGAATCTTTTAAAACCTTCAGCAATAAAAATCATTTGAACGCAAATTTTAAGGAGCAATCTTTAAAAAAATGCAGGTTTTGTCAAGAGATACTTCTTGAGACTAAATATGTGGAACATGTAAGCACATATCATAAAGAATCTTTACACAAATGTCTTAAATGCAATGAAATATTTTATTCCTTAAATAAATTGCAAAGCCATGAAAAGACTTGTCAAGTACAAATGAAGTCACATTGTGCGAAGTGTTTAAAACAATTTAGCGAAGAAGAATTTAGGTGTCATTCCTGTGGGGATCATTGTCCTGAATGCTCTCAATCTCCCTGTATACATCATAAGTATCTAATGTATTTTAGACAACAGAAATCACAGAAGCTTGAAGTTAAATGTCTAGATTGTGAATTTGCTTGTGGAAATATACTGAAATTAATTACTCATGTTAACCGCAAACACTTAAATCATCATCCATACACTTGTGATGCCTGTGCCCGGCAGTTCTATTCTAAAGATAATCTCAAGGCTCATATTCTACAGTTTCATGAAGAATTTTTTGTATGTCAATACTGTGACTCTGAGTTCCGTAATATTAATGTGTATGAAAGTCATGTAACATCTTGTGAGGATATTGTAAGGAGGTTCGCATGTGAAGATTGTCCGGCCTCCTTTGATTCTTCTGAAAGTTTGTTGTATCATGAGAAACTTAGGCATAGCAAGGACATATTTCCATGTGGTCTTTGTAGCAGAAAATTCTTGAAAGAGTCTGAAAGGTTGGCGCATATGTTCAAAGTCCACAAGCACCAGAAAGCTAAAAGTAAAACAGTAAATGTAGAATGTGCAATATGCCAAGAAAAGTTCGACAATAAGAGGGAATTAGTACTACATATGAAATCCCATGGCCCAAATTATCCATGTAAGATTTGCAACATAACATTTGACACTTTAAGACAATTTAAAGCTCATTATCGCAAACACAACGGACCGTTCGCAACGTGCCATATCTGCGGCGAAGAGATGAGAGAAATCTTGCTAAAAAGACATCTAACGACCCACACAGATTCCATCATGACGTGTGAAACTTGCGGCAAGTCTTTTCGAAACACCCAGCTCTTAAAATACCATCAAAAAGTACACCTAGAAAGTGTACCATGCCCTAAGTGCAAGAAACTGATTAACCCTGCGAGATTGCGGAGACACTGGAACGGGCATCTAATTGCAGAGAACCCAGTGCAAAGGAGAGCTAGAAAAAAGCAGCCACACTTGAAATGTGATCAATGTAACTACAAAACTTATAATAACTTATTACTAGAGTGTCATATCAACCGTCACCATGTGAAAGTGAAGCCATATGTTTGTCATATATGCAGCAAGGCCTTCATAGGAAAACATTTGCTAAAGAATCACATAGAAAGACACAATGTGAAAAGTATTGCGTGTATGGTTTGTCTGAAGAGCTTCGCTAACCCTGCATGTCTGAAAATGCATCTCCGTCTACACACTGGCGAGAAACCTTTTACTTGTGAAATATGCGGCGAGAGATTTCGCTCGTCTAGCATCATGAATGTACATAAGCTTAAAAAGCATTCGGAAAAGAGTATTATCTGTCCGTTGTGCTCAAATAAGTTTCATACAGTGAGGGACTTGAGGAGGCATGTTATAAAAGTTCATTGGAAGCAGAAAAAACCGTTCGATCCCAGGGAGTTGACGGGTTTGGACAAAGAGCATTACCACTTATTCCATGATGGGAGAAGAGTAAAAGTTGATGATGAAGAAGTTGATATTTATATGCCTTGTCTGGCATCGAACTAA
- Protein Sequence
- MNCFKPNIKSILHSTHFCGLCLNSKSNLRAIDQEIEITINQQSRTKTLKSINDVVFKETESILASSQICSSCTEKLLQSYIFIENTLETSRMIGRYVNDLFCKANDIFNHLTDENIESSNVVIVLEDSVDNCIAKQKVHHTAKKGDATSEINKKTVAPERKHSKFKCDKCNTILPSFKELKSHKMECKRPNSIQYKESFKTFSNKNHLNANFKEQSLKKCRFCQEILLETKYVEHVSTYHKESLHKCLKCNEIFYSLNKLQSHEKTCQVQMKSHCAKCLKQFSEEEFRCHSCGDHCPECSQSPCIHHKYLMYFRQQKSQKLEVKCLDCEFACGNILKLITHVNRKHLNHHPYTCDACARQFYSKDNLKAHILQFHEEFFVCQYCDSEFRNINVYESHVTSCEDIVRRFACEDCPASFDSSESLLYHEKLRHSKDIFPCGLCSRKFLKESERLAHMFKVHKHQKAKSKTVNVECAICQEKFDNKRELVLHMKSHGPNYPCKICNITFDTLRQFKAHYRKHNGPFATCHICGEEMREILLKRHLTTHTDSIMTCETCGKSFRNTQLLKYHQKVHLESVPCPKCKKLINPARLRRHWNGHLIAENPVQRRARKKQPHLKCDQCNYKTYNNLLLECHINRHHVKVKPYVCHICSKAFIGKHLLKNHIERHNVKSIACMVCLKSFANPACLKMHLRLHTGEKPFTCEICGERFRSSSIMNVHKLKKHSEKSIICPLCSNKFHTVRDLRRHVIKVHWKQKKPFDPRELTGLDKEHYHLFHDGRRVKVDDEEVDIYMPCLASN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -