Apsi013173.2
Basic Information
- Insect
- Acronicta psi
- Gene Symbol
- -
- Assembly
- GCA_946251945.1
- Location
- CAMIUM010000046.1:3652713-3666740[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.024 1.5 9.6 0.6 2 23 226 249 225 249 0.95 2 17 0.044 2.7 8.8 0.0 5 23 277 296 275 296 0.93 3 17 0.063 3.9 8.3 0.2 1 19 303 321 303 323 0.92 4 17 0.11 6.5 7.6 0.2 4 23 336 355 332 355 0.90 5 17 0.11 6.5 7.6 0.2 4 23 383 402 379 402 0.90 6 17 0.11 6.5 7.6 0.2 4 23 430 449 426 449 0.90 7 17 0.11 6.5 7.6 0.2 4 23 477 496 473 496 0.90 8 17 0.11 6.5 7.6 0.2 4 23 524 543 520 543 0.90 9 17 0.11 6.5 7.6 0.2 4 23 571 590 567 590 0.90 10 17 0.11 6.5 7.6 0.2 4 23 618 637 614 637 0.90 11 17 0.11 6.5 7.6 0.2 4 23 665 684 661 684 0.90 12 17 0.11 6.5 7.6 0.2 4 23 712 731 708 731 0.90 13 17 0.11 6.5 7.6 0.2 4 23 759 778 755 778 0.90 14 17 0.11 6.5 7.6 0.2 4 23 806 825 802 825 0.90 15 17 8.8e-05 0.0055 17.3 0.2 3 23 833 855 831 855 0.90 16 17 0.031 1.9 9.3 3.1 1 23 861 883 861 884 0.93 17 17 0.0097 0.6 10.9 2.9 3 23 894 917 892 917 0.92
Sequence Information
- Coding Sequence
- ATGTTTGCGTCACATGAGAAAAATGTTGGCAAAAAAACATTTCAGAAACCAAATATTCTCAGGAAAAAGACTAAGATTTCTGTTCCAAAACCAATCATATCCAATGATAATGAATCTCCCAAGGCAAGATCCCTAGTCACCACCCATGAAGCAAAAGTCAACATATCAGAACATTTAGATAAGATTACTCTTGAAGGAAGCAATAAGCCCACAAATATAGTAAAATCAGCACAGAAATTGACATTAGCTAATAGTTGTGAAGACAATAATGTACAAATATCTCAGGAGACTGATAGTAGCAACATTGCTCACAAAGCAAGTATAGGTAAAAGTTTTGACCAGAATATGCTCAATATTGAATCCTTTATAAATGGTGGAGTTATTGAACAGGACACATTTTTGACTTATGATATTGCTGTATCAACAGAAAATAAAATATCTCCGGCTAATAATAAATGGGGCTATGGTATAAGTAACAATTCTATGGATATTACAGTGAACAATAAAAGACACCAAGAGTTGGGAGATTTGGAAGGAGGGTTGAATCCAGTCATTGTGGTACCTTCAGGCCCAACATCTGACAAACCACCTCAGCAAGAATGTGATCTGTCGAGCAACACAACACCTGCAGTAACCATTCCTTTTGAATGCTTTTCAAGCAGACCCGTTAAGCTTAAGTGTGACTATCCTGATTGCAATAAAGGCTTCTGGACTGAGGAGAAACTGAATAAGCACAAAAACTCGCACAACAAACAAGTTTTACGAACTCCATCACAGACTCCAATTCAGTGTCCGGTGAAGAAAGTCGCCGATGATGGCACAGAGGATAAGTGCCCACGCACTTTTGAAGTAAGAGGCGAGCTGCTGAAGCATCTTAACGAGGACCATACACTAGAAGATGCCCAACACAGGTGCTCGGTGTGCGGGCGGCGGTTCTTTTGGGCGTCGGGGCTGCGCGCGCACGGGACGGCGCGGTGCGCGCGCGGCGGGCTGGCCTGCGCCTGGCCCGGCTGCGGCCGAGTGTTCCGCCTGCCCTGCCGCCTGCGCGAGCACAGCCGCGCGCACACCGGCGACCGCCCCTACCTGTGCCGGTACCCTGTGAGTACTACTACATTACTTCTGGGCGGCGGGCTGGCCTGCGCCTGGCCCGGCTGCGGCCGAGTGTTCCGCCTGCCCTGCCGCCTGCGCGAGCACAGCCGCGCGCACACCGGCGACCGCCCCTACCTGTGCCGGTACCCTGTGAGTACTACTACATTACTTCTGGGCGGCGGGCTGGCCTGCGCCTGGCCCGGCTGCGGCCGAGTGTTCCGCCTGCCCTGCCGCCTGCGCGAGCACAGCCGCGCGCACACCGGCGACCGCCCCTACCTGTGCCGGTACCCTGTGAGTACTACTACATTACTTCTGGGCGGCGGGCTGGCCTGCGCCTGGCCCGGCTGCGGCCGAGTGTTCCGCCTGCCCTGCCGCCTGCGCGAGCACAGCCGCGCGCACACCGGCGACCGCCCCTACCTGTGCCGGTACCCTGTGAGTACTACTACATTACTTCTGGGCGGCGGGCTGGCCTGCGCCTGGCCCGGCTGCGGCCGAGTGTTCCGCCTGCCCTGCCGCCTGCGCGAGCACAGCCGCGCGCACACCGGCGACCGCCCCTACCTGTGCCGGTACCCTGTGAGTACTACTACATTACTTCTGGGCGGCGGGCTGGCCTGCGCCTGGCCCGGCTGCGGCCGAGTGTTCCGCCTGCCCTGCCGCCTGCGCGAGCACAGCCGCGCGCACACCGGCGACCGCCCCTACCTGTGCCGGTACCCTGTGAGTACTACTACATTACTTCTGGGCGGCGGGCTGGCCTGCGCCTGGCCCGGCTGCGGCCGAGTGTTCCGCCTGCCCTGCCGCCTGCGCGAGCACAGCCGCGCGCACACCGGCGACCGCCCCTACCTGTGCCGGTACCCTGTGAGTACTACTACATTACTTCTGGGCGGCGGGCTGGCCTGCGCCTGGCCCGGCTGCGGCCGAGTGTTCCGCCTGCCCTGCCGCCTGCGCGAGCACAGCCGCGCGCACACCGGCGACCGCCCCTACCTGTGCCGGTACCCTGTGAGTACTACTACATTACTTCTGGGCGGCGGGCTGGCCTGCGCCTGGCCCGGCTGCGGCCGAGTGTTCCGCCTGCCCTGCCGCCTGCGCGAGCACAGCCGCGCGCACACCGGCGACCGCCCCTACCTGTGCCGGTACCCTGTGAGTACTACTACATTACTTCTGGGCGGCGGGCTGGCCTGCGCCTGGCCCGGCTGCGGCCGAGTGTTCCGCCTGCCCTGCCGCCTGCGCGAGCACAGCCGCGCGCACACCGGCGACCGCCCCTACCTGTGCCGGTACCCTGTGAGTACTACTACATTACTTCTGGGCGGCGGGCTGGCCTGCGCCTGGCCCGGCTGCGGCCGAGTGTTTCGCCTGCCCTGCCGCCTGCGCGAGCACAGCCGCGCGCACACGGGCGACCGCCCCTACCTGTGCCGGTACCCTGAGTGCGGCTGGGCGTTCCGCTCCGCCAGCAAGCTGCTGCGGCACGCGCGGCGGCACACGGACGACCGCAAGCACGCGTGCCCGGCGTGCGCGCGCGCCTTCATGCGGCGCGAGCACCTGCGCGACCACTACGCGCGCCACCACCAGCCCAGCGCGCGCGCAACGCACCTCTGCACCCATCCAGGTTGTGAACAAACTTTTACGAACATGAGCACCCTGTACTTGCACATGAAGAAGGTTCACAGAAAAATCGAAAAAACAAGCGCCGCAAAGGATGTCGCAGATCAATCTGCGACTGTGAGTGAAGATGGAGAGAATTTTTATTTAGTCAGTATGGTCCCAGAACTAGACGTAACTGAAGGAGATACATCTGCAAGAGAAGGATTGTCAGTGGATGAGGAAATCGAGGACGGGCGGTCGGGTATGGCGGGCATGGCGGGCATGGCGGGCATGGCGGGCACGGTGGGCACGGTGGGCACGGGTCGCGCGGCGGGCGCGGCGGGCGCGGCGCAGTGGCACGCGGCGCGCACGCACTGCACGTGGCCGCTGGCGCGGCGCGCGCCGCCCGCCTACGCGCTGGACGACGACGCCGACGTGCACGTGGAGCGGGCAGAAGGTTCCGGTAGCGACGTGTACACAGTGCGCAGCGACCTTTTCCTTCACGGCAACGTACCCATCGATGAGGATAGTCAGCACATGGTGGGCGCGGCGGCGGGCGCGGCGCTGGAGGCCGACCTGTGCCTCGATGCGCATGCGCACCCCAGCATCGATCTCATGCAGGAGGAGTTAATGTATGAAGATGCTGCGGTGGACGAGACCTCGTTCAGGGTGTTCCTCATGAACGGTGAGGAACTGACTTAA
- Protein Sequence
- MFASHEKNVGKKTFQKPNILRKKTKISVPKPIISNDNESPKARSLVTTHEAKVNISEHLDKITLEGSNKPTNIVKSAQKLTLANSCEDNNVQISQETDSSNIAHKASIGKSFDQNMLNIESFINGGVIEQDTFLTYDIAVSTENKISPANNKWGYGISNNSMDITVNNKRHQELGDLEGGLNPVIVVPSGPTSDKPPQQECDLSSNTTPAVTIPFECFSSRPVKLKCDYPDCNKGFWTEEKLNKHKNSHNKQVLRTPSQTPIQCPVKKVADDGTEDKCPRTFEVRGELLKHLNEDHTLEDAQHRCSVCGRRFFWASGLRAHGTARCARGGLACAWPGCGRVFRLPCRLREHSRAHTGDRPYLCRYPVSTTTLLLGGGLACAWPGCGRVFRLPCRLREHSRAHTGDRPYLCRYPVSTTTLLLGGGLACAWPGCGRVFRLPCRLREHSRAHTGDRPYLCRYPVSTTTLLLGGGLACAWPGCGRVFRLPCRLREHSRAHTGDRPYLCRYPVSTTTLLLGGGLACAWPGCGRVFRLPCRLREHSRAHTGDRPYLCRYPVSTTTLLLGGGLACAWPGCGRVFRLPCRLREHSRAHTGDRPYLCRYPVSTTTLLLGGGLACAWPGCGRVFRLPCRLREHSRAHTGDRPYLCRYPVSTTTLLLGGGLACAWPGCGRVFRLPCRLREHSRAHTGDRPYLCRYPVSTTTLLLGGGLACAWPGCGRVFRLPCRLREHSRAHTGDRPYLCRYPVSTTTLLLGGGLACAWPGCGRVFRLPCRLREHSRAHTGDRPYLCRYPVSTTTLLLGGGLACAWPGCGRVFRLPCRLREHSRAHTGDRPYLCRYPECGWAFRSASKLLRHARRHTDDRKHACPACARAFMRREHLRDHYARHHQPSARATHLCTHPGCEQTFTNMSTLYLHMKKVHRKIEKTSAAKDVADQSATVSEDGENFYLVSMVPELDVTEGDTSAREGLSVDEEIEDGRSGMAGMAGMAGMAGTVGTVGTGRAAGAAGAAQWHAARTHCTWPLARRAPPAYALDDDADVHVERAEGSGSDVYTVRSDLFLHGNVPIDEDSQHMVGAAAGAALEADLCLDAHAHPSIDLMQEELMYEDAAVDETSFRVFLMNGEELT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -