Apsi005441.1
Basic Information
- Insect
- Acronicta psi
- Gene Symbol
- ZK686.5
- Assembly
- GCA_946251945.1
- Location
- CAMIUM010000017.1:8259993-8263124[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0046 0.28 11.9 0.5 1 23 251 274 251 274 0.94 2 18 3.4e-05 0.0021 18.6 5.4 1 23 279 301 279 301 0.98 3 18 4.1 2.5e+02 2.6 1.1 2 23 305 325 305 326 0.85 4 18 0.0031 0.19 12.5 0.8 1 23 331 354 331 354 0.96 5 18 3.5 2.2e+02 2.8 0.3 2 23 416 438 415 438 0.91 6 18 0.00044 0.027 15.1 1.0 1 23 444 467 444 467 0.93 7 18 0.0035 0.22 12.3 0.5 3 21 472 490 470 491 0.94 8 18 0.035 2.2 9.1 0.0 3 23 501 522 500 522 0.94 9 18 7 4.4e+02 1.9 1.9 1 23 527 550 527 550 0.92 10 18 0.01 0.64 10.8 0.2 2 23 563 584 562 584 0.96 11 18 0.00069 0.042 14.5 1.5 1 23 590 612 590 612 0.97 12 18 0.014 0.88 10.4 2.5 1 23 648 670 648 670 0.97 13 18 0.021 1.3 9.8 0.4 2 23 675 696 674 696 0.93 14 18 1.7e-05 0.001 19.6 0.3 2 23 715 737 714 737 0.96 15 18 0.0013 0.078 13.7 2.7 1 23 743 765 743 765 0.98 16 18 0.0018 0.11 13.2 5.4 2 23 772 793 771 793 0.95 17 18 2.4e-05 0.0015 19.1 2.0 1 23 799 822 799 822 0.97 18 18 0.45 28 5.6 2.0 2 23 828 850 827 850 0.95
Sequence Information
- Coding Sequence
- ATGGGTGATAAGAAGACGATGCCCACTGAATCTAACAAATTAGACTGGATCAAACAGAAGTTGCAGACTGTATGGACATGTGCTAAGTTCTGCGGTCTGTGTCTGGAGAGCCAAGGCAACTTCTGCTCTGTTGATATGGAGCTTGTGATTAACAACCAGACATTTTCTAAATGCTTACAGGATATTGTTAATTATGTTTTCAATGATGATATTGAAAACCTGATGTCAAGCCCTCACTTATGCGACAATTGCACAGAGAAGATAATACAGTCTTACATTTTCATTCACAATGCAAAGCAACTGTCTAAAATATTGAATAACTGTGTTACTGATATCTACTCTAAAGTTTTTGATGTCAATGAACAACTAGACAGTAACACCAAGTATGACAATGCAAATGTCATGATTGTCTTAGAAAACGACACTGAACTTTATAAAACTATCATTGATGTAAAATCTATGACTGAAATAGTGCCAACCGCCCGACCGATAGCTATGAAGGAAACTGTAGCAACGGTTCCTAAACAAGAACCAAAAGTTGAAGATATTAAACAACAAATTCCACAAATAACTTCAGTAAAATCATTAGCTGTAAAAAAGGAGGTAGAAAGTCCAAAGGTAGTTACAAAAATCCAGGAAAGAAAAGTGGTCAAACCTGGTGGTACACCCAACATTACCTTGAAAGGAGGTCATATAGTTATTAAACCTTTGAGCTCAACCAATTCAACTGTAGTTCCTCGGTACAGTACATATGAATGTACAGACTGTCCAGATATATTCACCACATACAGATCGCTGAAAGAACATGAAAAGGCCAAGCATAAAAAGGCTGTATTCTACTGTAACCTATGTGATAAATGTTACACCACTCAACAATATTTGAATATACACTACAAGACACATGCAAGAGCTAGGTGTAAATTGTGCCAAGTGATACTCCCAGAAGATCAATTGATGGATCATTTAAAAACACACCATGCTAACTTAGTTTACCCTTGCAGATTTTGTGACTTGGCTTACTATACCAAAGAATCATTAGAAACACATTTCAAAATTAGCCATTTAGTCAATGATAAGAAACCTAAATCGCAATGCATTATGTGTCTAAGGAACTTTACAGATATGGAGGTACTTAAAAACCACAAGTGCAAATTTTCATGCTCCGAATGCTTTGTAATGCCATGCATTCACTACAAGTACTTGCTCTCGTACAGAGAACAGTTGTTATGCCATGTTAATAAAGTGAAATGCATAGATTGTGACTATCTTACTGGTCGAAAAGAACATTTAATAGGGCACGCAAATAGAGAGCATTTGGATCATCACCCATTTACTTGTGCCGATTGTGGACAACAGTTTTATACCAAGCTAAGTTTAAAGACCCACATAGTACAATTTCACCAAGAAATCTTCTGTCAATACTGTGATTTTCAATTCAAAGATAATTACACATTAGATAGCCATAGAAGAGTCTGTAAATCTGTTGTACGAGCGGTTGCTTGTCCACAATGTGTTGCCTCTTTTGATACTGCACAAGAGTTAATAAATCATGAAAATCTAAGGCATAATGAAGGAGTGCATGCATGTACACTTTGCAAGGCAAGATTTTTAACTTTTATTCAACTTGAAGAGCACCATGCGAAAGTACATAGCGGTATACAATGTAAGAAAAGGCGGAAACACATAGAATGCTCCCTCTGTAACTTAATGTTCAACAATGTGAAGGAGTTACTTCAACATGAGAAACTCCATGATGCAAACGATATATATCCTTGCAAAGAGTGCAACAAAGAATTCAAATCGTTAATGAAATTATACATTCACAATCAAAGGCATTATACTAGCAGAATAAACTGTTCAGGTTGTAATAGAAAGGTTGCTACATCATTCTATGCCCAACACTCAGTGCGGTGTCCATACAAAAGAGATGCGGTCCTCACCCATGTCTGTGAAGTCTGTGGCAAAGGTTTCCACTTGGAATCTCTACTCCGCTTCCACCTGAAAACCCATATGGATCCTGTACCATGTCCTCATTGTGATAGGATTATGAAGCCATCAACTCTCAAAAGGCATATGGAACAAGTTCATGGAGATTCAGATGACAAACCTAGGAAACCAACTGCGCCAAGCAAGCCAAACATTGAATGTGAAATATGTGGACATGTAGTCAGAAAAAAAAGTGACTTGGAAGCTCATATGAACCGCTACCATCTAAAAATCAAGCCGTTTGTCTGTCATATATGCAGTAAGGACTTCTGCGGCAGAGTTCGTCTAAAAGAGCACATAGCAACCCACTCTACAGATAACAGTTGCTTTTGTTCTGTCTGTGGAAAGAAATTCGCCAACCGAGTATGTCTGAAAATGCACTTCAGAATACATACGGGAGAATATCCATACTCCTGCGACATCTGCGGACAGAAATTCAGATCTTCTAGTTTGATGAAGACCCATAGACTGAAAAAGCATTTAGAGAAAACTGTTAGCTGTCCATTATGTGACAGTATGTTCTTTATGGCCAGAGACATGAGGCATCACTTCAAGAAGACCCATTGGAAGTACAAAGATGGAAGGCCATTCAATCCTAGGGACGTTGAGGAATTATCTAAAGAACACTACTATCTTTTCGAGGATGGTAGATTGCCGAAAATTAAAAAAGAATGA
- Protein Sequence
- MGDKKTMPTESNKLDWIKQKLQTVWTCAKFCGLCLESQGNFCSVDMELVINNQTFSKCLQDIVNYVFNDDIENLMSSPHLCDNCTEKIIQSYIFIHNAKQLSKILNNCVTDIYSKVFDVNEQLDSNTKYDNANVMIVLENDTELYKTIIDVKSMTEIVPTARPIAMKETVATVPKQEPKVEDIKQQIPQITSVKSLAVKKEVESPKVVTKIQERKVVKPGGTPNITLKGGHIVIKPLSSTNSTVVPRYSTYECTDCPDIFTTYRSLKEHEKAKHKKAVFYCNLCDKCYTTQQYLNIHYKTHARARCKLCQVILPEDQLMDHLKTHHANLVYPCRFCDLAYYTKESLETHFKISHLVNDKKPKSQCIMCLRNFTDMEVLKNHKCKFSCSECFVMPCIHYKYLLSYREQLLCHVNKVKCIDCDYLTGRKEHLIGHANREHLDHHPFTCADCGQQFYTKLSLKTHIVQFHQEIFCQYCDFQFKDNYTLDSHRRVCKSVVRAVACPQCVASFDTAQELINHENLRHNEGVHACTLCKARFLTFIQLEEHHAKVHSGIQCKKRRKHIECSLCNLMFNNVKELLQHEKLHDANDIYPCKECNKEFKSLMKLYIHNQRHYTSRINCSGCNRKVATSFYAQHSVRCPYKRDAVLTHVCEVCGKGFHLESLLRFHLKTHMDPVPCPHCDRIMKPSTLKRHMEQVHGDSDDKPRKPTAPSKPNIECEICGHVVRKKSDLEAHMNRYHLKIKPFVCHICSKDFCGRVRLKEHIATHSTDNSCFCSVCGKKFANRVCLKMHFRIHTGEYPYSCDICGQKFRSSSLMKTHRLKKHLEKTVSCPLCDSMFFMARDMRHHFKKTHWKYKDGRPFNPRDVEELSKEHYYLFEDGRLPKIKKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00017616;
- 90% Identity
- -
- 80% Identity
- -